Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XN4	38497	2024-08-07	2023-12-29	2.34	2.61	2.44	2.2	0.005	0.81	1.0	0.05	18.21	0.01	2.200	11.08	3.23	2.5	97.4	0.1	1.34	0.86	0.87	3.46	2.2	0.003	0.70	0.0	0.04	18.14	0.00	2.493	8.42	3.47	2.2	97.8	0.0	1.90	0.43	0.86	0.87	2.91	19173	2506	14	0	0	0	0	logfile
✔	8XMT	38488	2024-08-09	2023-12-28	3.31	2.36	3.26	2.2	0.004	0.64	1.0	0.05	13.24	0.01	2.202	10.21	0.11	4.0	95.7	0.3	0.46	0.68	0.72	2.73	2.1	0.005	0.65	0.0	0.05	15.46	0.00	2.514	7.70	3.07	4.9	95.0	0.0	0.07	0.63	0.78	0.80	2.85	24217	3045	6	0	27	0	0	logfile
✔	8XN2	38495	2024-08-04	2023-12-28	2.79	2.29	2.72	2.9	0.004	0.63	0.0	0.06	14.75	0.01	2.206	7.92	0.00	3.3	96.7	0.0	1.32	0.63	0.64	1.62	3.0	0.003	0.72	0.0	0.04	16.52	0.00	2.295	9.65	1.44	3.3	96.7	0.0	0.92	0.72	0.74	0.75	1.53	6527	791	4	0	9	0	0	logfile
✔	8XN3	38496	2024-08-04	2023-12-28	2.64	2.38	2.65	2.4	0.003	0.57	0.0	0.04	13.62	0.00	2.067	9.37	0.00	3.4	96.6	0.0	1.25	0.62	0.63	2.51	2.1	0.003	0.73	0.0	0.05	16.82	0.01	2.349	11.65	2.73	4.1	95.9	0.0	0.60	0.72	0.73	0.72	2.46	6505	791	3	0	7	0	0	logfile
✔	8XMi	38478	2024-08-09	2023-12-27	3.0	3.24	3.00	3.2	0.004	0.60	0.0	0.04	11.90	0.00	2.262	3.82	1.56	3.0	97.0	0.0	-2.19	0.74	0.83	3.59	3.2	0.004	0.61	0.0	0.04	15.56	0.00	2.240	7.49	2.29	2.9	97.1	0.0	1.22	1.07	0.75	0.88	2.62	26718	3415	24	0	16	0	0	logfile
✔	8XM5	38463	2024-08-08	2023-12-27	2.61	2.22	2.60	2.1	0.004	0.64	3.0	0.05	12.96	0.01	2.026	8.16	0.11	4.3	95.6	0.1	0.14	0.78	0.79	3.41	2.0	0.003	0.62	0.0	0.05	15.90	0.00	2.406	7.09	2.25	4.2	95.8	0.0	0.35	1.29	0.78	0.80	3.03	24226	3047	6	0	27	0	0	logfile
✔	8XMH	38477	2024-08-09	2023-12-27	2.85	3.05	2.86	3.1	0.004	0.53	0.0	0.04	10.95	0.00	2.290	3.16	1.55	2.7	97.3	0.0	-1.68	0.71	0.81	3.33	3.1	0.003	0.59	0.0	0.04	15.53	0.00	2.321	6.82	2.20	2.9	97.1	0.0	1.48	0.68	0.73	0.87	2.82	26948	3444	24	0	16	0	0	logfile
✔	8XM7	38466	2024-08-07	2023-12-27	4.91	3.77	4.50	7.7	0.007	1.01	0.0	0.05	14.71	0.01	2.009	51.04	0.00	11.1	88.9	0.0	-2.89	0.86	0.80	—	7.7	0.004	0.77	0.0	0.05	14.79	0.01	1.989	22.88	0.00	7.1	92.9	0.0	-1.31	0.57	0.86	0.79	—	17190	2123	4	0	2	0	0	logfile
✔	8XMG	38476	2024-08-09	2023-12-27	2.9	2.26	2.89	2.0	0.004	0.61	0.0	0.06	12.81	0.01	2.216	6.94	0.11	3.7	96.3	0.0	0.23	0.78	0.79	3.45	2.0	0.005	0.66	0.0	0.05	15.70	0.00	2.220	7.27	2.83	3.7	96.3	0.0	0.30	1.02	0.78	0.81	3.12	24476	3062	6	0	38	0	0	logfile
✔	8XLM	38453	2024-08-10	2023-12-26	3.22	3.64	3.18	3.5	0.004	0.60	0.0	0.04	19.13	0.01	2.148	7.31	0.16	9.2	90.5	0.3	-0.71	0.77	0.76	1.66	3.5	0.002	0.59	0.0	0.04	17.50	0.00	2.512	6.15	2.64	7.8	91.9	0.3	-0.83	1.10	0.80	0.84	1.79	28596	3529	18	0	57	0	0	logfile
✔	8XLN	38454	2024-08-04	2023-12-26	3.78	3.92	3.75	3.8	0.004	0.65	0.0	0.04	17.14	0.00	2.162	7.15	0.00	6.2	93.8	0.0	0.46	0.78	0.81	1.72	3.8	0.002	0.60	0.0	0.04	16.27	0.00	2.495	4.82	1.01	5.2	94.8	0.0	0.55	0.38	0.79	0.82	1.37	6593	789	8	0	15	0	0	logfile
✔	8XKi	38418	2024-08-09	2023-12-23	3.2	3.40	3.22	3.4	0.004	0.58	0.0	0.05	19.04	0.00	2.156	6.18	0.30	5.8	94.1	0.1	-2.04	0.75	0.82	2.39	3.3	0.004	0.72	1.0	0.05	16.88	0.00	1.931	4.40	3.05	4.7	95.2	0.1	-1.15	1.02	0.77	0.88	2.20	24431	3121	13	0	32	0	0	logfile
✔	8VFV	43190	2024-08-07	2023-12-22	3.3	3.51	3.33	3.5	0.007	1.20	1.0	0.06	13.91	0.01	1.702	2.86	0.27	2.3	97.7	0.0	1.14	0.69	0.84	3.76	3.5	0.004	0.90	1.0	0.04	14.07	0.00	1.985	8.21	2.75	3.5	96.4	0.0	0.33	0.49	0.71	0.86	3.28	21240	2607	29	0	72	0	0	logfile
✔	8XJN	38402	2024-08-03	2023-12-21	3.06	3.28	3.09	3.2	0.004	0.43	0.0	0.04	10.30	0.00	2.207	4.41	0.85	1.6	98.4	0.0	0.92	0.66	0.82	3.85	3.2	0.006	0.64	0.0	0.04	14.33	0.00	2.425	6.34	2.43	2.2	97.8	0.0	1.46	0.60	0.68	0.84	2.92	8948	1164	6	0	1	0	0	logfile
✔	8XJK	38399	2024-08-03	2023-12-21	2.63	2.89	2.67	2.9	0.004	0.43	0.0	0.04	9.76	0.00	2.232	4.34	0.84	1.3	98.7	0.0	1.56	0.70	0.85	4.80	2.9	0.002	0.49	0.0	0.04	15.09	0.00	2.493	4.05	2.22	1.9	98.1	0.0	2.46	1.21	0.68	0.84	3.98	8850	1140	6	0	1	0	0	logfile
✔	8XJM	38401	2024-08-03	2023-12-21	2.85	3.04	2.79	3.0	0.003	0.42	0.0	0.04	10.25	0.00	2.256	4.68	1.05	1.3	98.7	0.0	1.55	0.67	0.82	4.65	3.0	0.003	0.54	0.0	0.04	14.74	0.00	2.440	5.71	2.22	1.6	98.4	0.0	2.22	0.53	0.68	0.83	3.80	8849	1140	6	0	1	0	0	logfile
✔	8XJL	38400	2024-08-03	2023-12-21	2.77	2.89	2.74	2.9	0.004	0.48	0.0	0.04	10.36	0.00	2.225	5.03	1.05	1.1	98.9	0.0	1.28	0.70	0.80	3.93	2.9	0.002	0.54	0.0	0.04	14.58	0.00	2.382	5.14	1.69	1.6	98.4	0.0	2.17	0.59	0.67	0.79	2.95	8846	1140	6	0	1	0	0	logfile
✔	8XJ4	38393	2024-08-02	2023-12-20	3.19	3.42	3.49	3.7	0.005	0.80	0.0	0.05	19.96	0.02	2.221	6.60	1.57	2.8	97.2	0.0	1.21	0.73	0.81	3.19	3.7	0.003	0.70	0.0	0.04	18.40	0.01	2.424	4.08	1.10	3.3	96.7	0.0	1.50	1.18	0.70	0.79	2.64	5820	693	6	0	12	0	0	logfile
✔	8XJ6	38394	2024-08-08	2023-12-20	3.32	3.84	3.59	3.7	0.005	0.75	0.0	0.05	14.55	0.00	2.196	12.87	0.40	3.7	95.8	0.5	-0.25	0.76	0.78	1.67	3.7	0.005	0.71	0.0	0.05	15.22	0.00	2.378	11.41	1.66	4.3	95.4	0.3	-0.32	1.23	0.77	0.81	1.61	22688	2807	12	0	8	0	0	logfile
✔	8XJ8	38396	2024-08-06	2023-12-20	2.67	2.90	2.75	3.2	0.004	0.73	0.0	0.04	17.64	0.00	2.015	5.62	2.00	4.0	95.3	0.7	-0.63	0.40	0.36	0.23	2.9	0.002	0.60	0.0	0.04	17.71	0.00	2.097	4.98	1.89	3.9	95.6	0.5	0.22	2.93	0.74	0.86	2.90	15904	1957	10	6	6	0	0	logfile

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