Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BRZ	44846	2024-08-09	2024-05-12	3.8	4.20	3.95	4.1	0.006	0.92	0.0	0.04	16.83	0.01	2.117	5.44	3.59	4.7	95.3	0.0	-0.20	0.61	0.74	1.07	4.1	0.004	0.80	0.0	0.04	17.50	0.00	2.330	13.27	6.84	4.7	95.3	0.0	0.85	0.63	0.64	0.77	0.92	25204	3277	22	0	12	0	0	logfile
✔	9BRY	44845	2024-08-08	2024-05-12	3.6	3.97	3.81	4.0	0.005	0.88	0.0	0.04	16.14	0.01	2.423	5.08	2.88	4.2	95.8	0.0	-0.33	0.59	0.66	0.71	4.0	0.004	0.78	0.0	0.04	17.08	0.00	2.503	12.44	5.11	4.9	95.1	0.0	0.37	4.47	0.59	0.67	0.65	23530	3066	20	0	12	0	0	logfile
✔	9BQV	44825	2024-08-07	2024-05-10	3.2	3.93	3.27	3.7	0.021	1.35	2.0	0.07	14.53	0.01	2.156	7.50	0.00	5.9	93.9	0.2	-2.27	0.86	0.82	2.67	3.7	0.003	0.56	0.0	0.04	15.77	0.00	2.521	5.43	1.31	2.5	97.3	0.2	1.78	1.19	0.88	0.86	2.05	18697	2316	2	0	0	0	0	logfile
✔	8ZH8	60096	2024-08-04	2024-05-10	3.19	3.97	3.21	3.6	0.003	0.67	0.0	0.04	12.78	0.00	2.207	11.98	0.10	2.9	97.1	0.0	0.57	0.68	0.68	1.06	3.7	0.003	0.80	0.0	0.04	16.31	0.00	2.441	13.40	2.30	3.7	96.3	0.0	0.51	0.97	0.70	0.76	0.76	10048	1316	8	0	1	0	0	logfile
✔	9FAA	50270	2024-08-03	2024-05-10	3.6	3.34	3.60	3.9	0.010	1.10	0.0	0.05	11.73	0.01	2.275	10.96	0.00	1.7	98.3	0.0	-4.21	0.52	0.75	3.32	3.8	0.004	0.69	0.0	0.05	13.45	0.00	2.524	6.74	2.24	6.9	93.1	0.0	-4.10	0.69	0.52	0.76	3.00	8695	590	10	0	5	0	4235	logfile
✔	8ZGT	60090	2024-08-03	2024-05-09	2.96	3.17	2.99	3.2	0.004	0.79	0.0	0.05	18.71	0.01	2.251	2.24	4.14	4.9	95.0	0.1	-0.71	0.65	0.81	3.12	3.2	0.003	0.61	0.0	0.05	17.25	0.00	2.442	3.48	2.83	4.6	95.3	0.1	1.01	0.32	0.63	0.80	2.90	8915	1077	13	0	14	0	0	logfile
✔	8ZGS	60089	2024-08-03	2024-05-09	3.04	3.27	3.08	3.3	0.007	0.75	0.0	0.05	18.16	0.01	2.217	6.51	0.61	4.3	95.7	0.0	0.87	0.62	0.79	2.99	3.3	0.004	0.58	0.0	0.04	17.12	0.00	2.434	3.42	3.94	4.3	95.7	0.0	1.36	0.33	0.65	0.82	2.69	8915	1077	13	0	14	0	0	logfile
✔	8ZFL	60064	2024-08-06	2024-05-08	2.61	2.71	2.56	2.8	0.003	0.51	0.0	0.04	16.53	0.00	2.236	3.12	0.69	2.1	97.9	0.0	1.07	0.69	0.87	4.20	2.8	0.002	0.60	0.0	0.05	16.89	0.00	2.628	2.95	1.71	2.0	98.0	0.0	2.43	0.55	0.73	0.90	4.31	17070	2060	20	0	25	0	0	logfile
✔	9BP6	44762	2024-08-05	2024-05-07	3.1	3.37	3.02	3.3	0.005	0.88	0.0	0.05	16.03	0.01	1.963	3.03	0.14	2.7	97.3	0.0	0.29	0.66	0.75	3.00	3.3	0.003	0.58	0.0	0.04	17.08	0.00	1.926	5.58	2.75	2.2	97.8	0.0	0.64	0.67	0.74	0.83	3.09	13631	1732	8	0	8	0	0	logfile
✔	8ZEE	60026	2024-08-07	2024-05-06	2.9	2.66	2.99	3.3	0.007	1.19	0.0	0.04	18.03	0.01	2.080	5.25	0.00	2.7	97.2	0.1	1.55	0.78	0.82	2.75	3.3	0.004	0.61	0.0	0.04	16.89	0.00	2.334	5.69	1.53	3.5	96.5	0.0	1.59	0.41	0.79	0.85	2.47	20218	2101	26	0	70	0	0	logfile
✔	8ZCJ	39931	2024-08-03	2024-04-29	3.09	3.33	3.11	3.4	0.007	0.93	1.0	0.05	16.04	0.01	2.258	9.36	0.44	5.3	94.6	0.1	-1.54	0.62	0.69	1.51	3.3	0.003	0.69	0.0	0.04	16.47	0.00	2.245	9.43	3.67	4.7	95.3	0.0	-1.15	1.14	0.63	0.70	1.96	7808	1126	7	0	1	0	0	logfile
✔	9BKK	44643	2024-08-03	2024-04-29	2.51	2.85	2.68	2.9	0.012	1.75	2.0	0.10	12.29	0.01	2.388	6.33	2.54	4.5	94.6	0.9	-1.67	0.46	0.61	2.41	2.9	0.003	0.61	0.0	0.04	16.12	0.00	2.424	5.36	2.25	2.3	97.7	0.0	1.51	1.15	0.56	0.73	2.12	6809	890	6	0	1	0	0	logfile
✔	8ZC1	39919	2024-08-02	2024-04-28	4.17	4.43	4.20	4.3	0.003	0.75	0.0	0.05	13.38	0.01	2.313	5.92	0.00	4.3	95.7	0.0	-1.66	0.73	0.72	—	4.3	0.003	0.65	0.0	0.05	13.45	0.00	2.494	9.72	0.00	5.8	94.2	0.0	-1.44	0.60	0.74	0.74	—	4570	597	3	0	0	0	0	logfile
✔	8ZC5	39923	2024-08-03	2024-04-28	3.91	4.07	3.86	4.0	0.004	0.76	0.0	0.05	13.55	0.01	2.258	4.88	0.00	4.4	95.6	0.0	-1.55	0.74	0.78	2.73	4.0	0.003	0.67	0.0	0.05	14.99	0.00	2.515	8.18	1.71	4.4	95.6	0.0	-0.90	1.46	0.74	0.79	2.49	6515	830	8	0	2	0	0	logfile
✔	8ZBE	39901	2024-08-03	2024-04-26	3.24	3.44	3.22	3.4	0.005	0.90	0.0	0.05	15.39	0.00	1.320	11.65	0.00	6.2	93.8	0.0	-2.05	0.60	0.66	0.71	3.4	0.004	0.66	0.0	0.04	16.11	0.00	2.544	9.48	6.14	5.3	94.7	0.0	-0.97	0.44	0.61	0.68	1.15	7489	1113	7	0	1	0	0	logfile
✔	8Z9Z	39873	2024-08-05	2024-04-24	3.5	3.90	3.63	3.8	0.002	0.48	0.0	0.04	18.14	0.00	2.209	9.03	0.29	2.5	97.5	0.0	3.18	0.61	0.77	1.29	3.8	0.003	0.49	0.0	0.04	18.32	0.00	2.441	7.82	3.77	2.3	97.7	0.0	3.23	0.28	0.61	0.79	1.33	12648	1519	8	0	6	0	0	logfile
✔	9BiT	44601	2024-08-04	2024-04-24	3.1	3.27	3.05	3.2	0.003	0.60	0.0	0.04	18.48	0.01	2.073	6.13	1.60	6.8	93.2	0.0	-0.05	0.60	0.83	2.75	3.2	0.003	0.57	0.0	0.04	18.31	0.00	2.248	4.97	2.80	6.8	93.2	0.0	0.47	0.32	0.63	0.85	2.60	9448	595	3	0	1	0	4734	logfile
✔	9BiS	44600	2024-08-04	2024-04-24	3.2	3.55	3.16	3.4	0.004	0.78	0.0	0.04	18.67	0.00	1.376	7.08	0.40	8.7	91.3	0.0	0.07	0.59	0.82	2.90	3.4	0.003	0.57	0.0	0.04	18.34	0.00	2.278	4.65	1.60	7.0	93.0	0.0	0.77	0.78	0.61	0.84	3.10	9444	595	3	0	1	0	4734	logfile
✔	9BiU	44602	2024-08-04	2024-04-24	2.9	3.33	2.90	3.2	0.003	0.56	0.0	0.04	17.10	0.00	2.204	4.85	2.00	7.0	93.0	0.0	0.77	0.63	0.84	2.63	3.2	0.003	0.59	0.0	0.04	17.16	0.00	2.278	5.49	2.59	6.5	93.5	0.0	0.80	0.83	0.62	0.85	2.50	9458	595	3	0	1	0	4738	logfile
✔	9BiB	44586	2024-08-07	2024-04-23	3.81	4.09	3.87	4.0	0.004	0.63	12.0	0.06	7.50	0.00	2.200	3.34	4.65	3.0	96.9	0.1	-2.18	0.64	0.64	1.95	4.0	0.002	0.57	0.0	0.04	11.64	0.00	2.425	3.52	3.72	4.1	95.9	0.0	0.70	0.65	0.68	0.71	1.94	19269	3172	8	0	0	0	0	logfile

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