Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UNL	42408	2024-08-03	2023-10-19	3.3	3.59	3.34	3.6	0.005	0.68	0.0	0.04	14.03	0.00	2.228	3.82	0.00	1.6	98.4	0.0	1.49	0.66	0.88	2.99	3.6	0.002	0.48	0.0	0.04	14.00	0.00	2.492	2.78	1.66	1.8	98.2	0.0	1.59	0.92	0.68	0.89	2.88	6550	894	6	0	2	1	0	logfile
✔	8UNM	42409	2024-08-03	2023-10-19	3.4	3.77	3.54	3.7	0.005	0.64	0.0	0.04	13.95	0.00	2.208	3.37	0.00	2.5	97.5	0.0	1.00	0.64	0.86	3.61	3.7	0.003	0.53	0.0	0.04	14.78	0.00	2.496	2.63	2.47	2.2	97.8	0.0	1.48	0.32	0.64	0.86	2.92	6415	889	6	0	2	0	0	logfile
✔	8Uo0	42423	2024-08-03	2023-10-19	3.5	4.01	3.77	4.0	0.006	0.93	0.0	0.06	13.94	0.01	2.268	5.98	0.21	2.5	97.5	0.0	1.21	0.61	0.80	1.82	4.0	0.002	0.49	0.0	0.04	14.61	0.00	2.516	3.21	4.11	2.0	98.0	0.0	1.82	0.33	0.63	0.82	1.65	6222	902	6	0	2	0	0	logfile
✔	8UNY	42421	2024-08-03	2023-10-19	3.6	4.06	3.81	4.0	0.006	0.97	0.0	0.06	14.64	0.01	2.255	7.64	0.00	1.7	98.3	0.0	1.32	0.63	0.80	2.56	4.0	0.003	0.55	0.0	0.04	14.63	0.00	2.341	4.58	2.79	1.1	98.9	0.0	1.54	0.97	0.65	0.81	2.58	6546	912	6	0	2	0	0	logfile
✔	8UMX	42387	2024-08-03	2023-10-18	4.0	5.63	3.86	4.0	0.003	0.77	0.0	0.04	17.12	0.00	2.173	17.66	0.50	5.0	94.9	0.1	-0.01	0.52	0.81	—	4.0	0.003	0.80	0.0	0.04	17.62	0.00	2.487	16.63	3.65	4.8	95.1	0.1	0.23	1.74	0.54	0.85	—	7166	906	6	0	0	0	0	logfile
✔	8WT7	37828	2024-08-05	2023-10-18	2.7	3.41	2.76	3.1	0.008	1.31	0.0	0.08	19.85	0.00	1.608	0.25	0.49	0.7	99.3	0.0	-1.68	0.88	0.88	3.73	3.1	0.003	0.50	0.0	0.03	20.56	0.00	1.993	4.18	0.49	0.6	99.4	0.0	3.09	0.44	0.86	0.86	3.08	14846	1246	14	239	2	4	0	logfile
✔	8UN7	42394	2024-08-05	2023-10-18	3.55	3.01	3.15	3.2	0.004	0.75	4.0	0.05	18.14	0.00	1.628	6.45	4.72	12.7	86.4	0.9	-4.64	0.71	0.83	2.45	3.2	0.003	0.62	0.0	0.05	17.82	0.00	2.274	4.30	5.07	15.1	84.7	0.2	-4.38	0.29	0.74	0.83	2.46	14296	1752	16	0	24	0	0	logfile
✔	8UMV	42385	2024-08-08	2023-10-18	2.75	2.95	2.82	3.0	0.003	0.68	0.0	0.05	15.43	0.01	2.062	7.08	1.69	2.2	97.8	0.0	-1.56	0.71	0.83	3.28	3.0	0.006	0.68	0.0	0.04	17.77	0.01	1.898	8.45	2.60	2.0	98.0	0.0	0.56	0.95	0.74	0.88	3.13	21860	2647	15	47	9	0	0	logfile
✔	8WT9	37830	2024-08-05	2023-10-18	2.7	3.37	2.80	3.1	0.008	1.36	0.0	0.08	20.16	0.00	1.607	0.58	0.98	0.8	99.2	0.0	-1.58	0.89	0.89	4.37	3.2	0.003	0.52	0.0	0.03	20.85	0.00	1.975	3.57	0.39	0.5	99.5	0.0	2.78	1.18	0.84	0.88	3.55	14982	1258	13	239	2	2	0	logfile
✔	8UN1	42390	2024-08-08	2023-10-18	3.9	4.40	4.25	4.3	0.014	1.17	0.0	0.05	16.24	0.01	2.085	21.08	0.47	5.1	94.9	0.0	-0.76	0.71	0.65	0.23	4.3	0.004	0.84	0.0	0.05	17.44	0.01	2.478	15.34	4.47	5.1	94.9	0.0	-0.21	2.33	0.75	0.75	0.72	22091	2904	21	0	0	0	0	logfile
✔	8WT6	37827	2024-08-05	2023-10-18	2.5	3.24	2.60	3.0	0.008	1.36	0.0	0.08	19.93	0.01	1.607	0.40	0.40	0.7	99.3	0.0	-1.54	0.86	0.90	5.47	3.0	0.003	0.52	0.0	0.04	20.70	0.00	1.869	3.66	0.30	0.5	99.5	0.0	2.82	0.43	0.81	0.85	3.90	14743	1246	15	233	2	4	0	logfile
✔	8QVW	18674	2024-08-02	2023-10-18	3.0	3.25	3.07	3.2	0.003	0.60	0.0	0.04	18.02	0.00	2.155	14.69	0.23	4.3	95.7	0.0	1.25	0.75	0.76	1.70	3.2	0.004	0.72	0.0	0.04	18.61	0.00	2.476	12.28	3.00	3.9	96.1	0.0	1.23	0.47	0.73	0.76	2.03	3918	492	2	0	0	0	0	logfile
✔	8UMP	42381	2024-08-07	2023-10-18	2.92	3.27	3.11	3.3	0.007	0.74	0.0	0.04	19.06	0.01	2.226	7.20	0.69	0.4	99.6	0.0	1.18	0.67	0.87	4.31	3.3	0.002	0.50	0.0	0.04	18.92	0.00	2.593	7.99	2.11	1.4	98.6	0.0	3.49	0.38	0.66	0.86	3.76	21432	2724	24	0	0	0	0	logfile
✔	8UMW	42386	2024-08-08	2023-10-18	2.93	3.19	3.06	3.2	0.004	0.69	1.0	0.05	15.13	0.01	2.045	6.48	1.90	2.5	97.5	0.0	-1.73	0.73	0.83	2.90	3.2	0.003	0.62	0.0	0.04	17.77	0.00	1.972	7.40	2.51	2.3	97.7	0.0	0.75	1.03	0.73	0.87	2.67	21860	2647	15	47	9	0	0	logfile
✔	8UMU	42384	2024-08-07	2023-10-18	3.16	3.41	3.26	3.4	0.006	1.02	4.0	0.06	17.81	0.01	2.104	8.60	0.84	2.8	97.2	0.0	-1.89	0.71	0.71	1.14	3.4	0.004	0.69	0.0	0.04	17.96	0.00	1.951	13.49	3.65	3.5	96.5	0.0	0.19	0.53	0.72	0.74	1.15	20521	2603	12	0	7	0	0	logfile
✔	8UMT	42383	2024-08-07	2023-10-18	3.33	3.59	3.44	3.5	0.004	0.75	0.0	0.05	14.62	0.01	2.048	9.08	4.14	3.6	96.3	0.0	-2.12	0.75	0.71	1.12	3.5	0.005	0.89	1.0	0.05	16.54	0.01	1.878	16.21	4.06	4.3	95.7	0.0	-0.30	1.78	0.77	0.75	0.95	20697	2625	12	0	7	0	0	logfile
✔	8WTD	37832	2024-08-03	2023-10-18	3.06	3.33	3.05	3.4	0.005	0.90	7.0	0.05	18.48	0.00	2.232	8.87	0.72	5.3	93.9	0.8	-0.02	0.53	0.80	1.75	3.4	0.003	0.58	0.0	0.04	17.80	0.00	2.590	5.54	2.31	4.7	95.2	0.1	0.33	0.97	0.59	0.84	2.66	6456	790	3	0	4	0	0	logfile
✔	8UN0	42389	2024-08-08	2023-10-18	3.0	3.26	3.12	3.2	0.004	0.80	0.0	0.05	18.78	0.01	2.068	6.27	0.56	3.1	96.9	0.0	-1.93	0.75	0.82	1.88	3.2	0.004	0.81	1.0	0.05	19.14	0.00	1.875	9.53	2.94	2.7	97.3	0.0	0.48	0.98	0.77	0.86	2.35	21860	2647	15	47	9	0	0	logfile
✔	8WT8	37829	2024-08-05	2023-10-18	2.9	3.51	2.97	3.3	0.008	1.33	0.0	0.08	20.48	0.00	1.611	0.18	0.59	1.9	98.1	0.0	-2.17	0.89	0.88	2.68	3.3	0.003	0.55	0.0	0.03	21.13	0.00	1.971	4.09	0.79	1.2	98.8	0.0	2.50	0.47	0.87	0.89	1.86	14916	1246	11	239	1	0	0	logfile
✔	8UMR	42382	2024-08-07	2023-10-18	4.42	5.02	4.78	4.6	0.004	0.82	0.0	0.05	12.52	0.01	2.052	27.72	0.00	2.7	97.3	0.0	-0.03	0.83	0.77	—	4.6	0.004	0.83	0.0	0.04	13.57	0.01	2.303	23.07	0.00	3.8	96.2	0.0	0.04	1.14	0.84	0.82	—	18615	2364	21	0	0	0	0	logfile

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