Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TZE	41756	2024-08-03	2023-08-26	2.9	3.19	2.95	3.2	0.007	0.76	0.0	0.05	14.56	0.02	2.140	7.97	1.30	3.8	95.9	0.3	0.15	0.49	0.75	3.59	3.2	0.006	0.60	0.0	0.05	15.48	0.01	2.426	5.42	1.30	3.7	96.2	0.1	0.20	0.98	0.50	0.76	3.65	6255	787	2	0	1	0	0	logfile
✔	8TZ2	41731	2024-08-09	2023-08-26	2.8	3.03	2.88	3.1	0.007	0.75	0.0	0.04	15.02	0.00	2.112	2.01	0.00	1.1	98.9	0.0	3.08	0.63	0.80	3.30	3.1	0.003	0.51	0.0	0.04	16.14	0.00	2.160	1.93	1.35	1.2	98.8	0.0	3.52	0.63	0.61	0.81	2.54	24591	1599	9	0	12	6	12165	logfile
✔	8TZB	41753	2024-08-03	2023-08-26	3.1	2.37	—	3.2	0.006	0.65	0.0	0.04	14.68	0.01	2.177	10.41	0.30	5.7	94.1	0.1	-0.33	0.76	0.73	2.27	3.2	0.003	0.57	0.0	0.04	15.09	0.00	2.417	8.54	2.25	4.9	95.0	0.1	-0.25	0.18	0.75	0.72	2.15	7283	1012	3	0	1	0	0	logfile
✔	8TZ9	41738	2024-08-08	2023-08-26	3.67	4.03	3.86	3.9	0.009	0.60	0.0	0.04	15.65	0.00	2.295	3.87	0.72	1.7	98.3	0.0	3.31	0.62	0.74	1.58	3.9	0.003	0.55	0.0	0.03	14.97	0.00	2.364	5.52	2.08	1.9	98.1	0.0	3.22	1.16	0.62	0.77	1.15	24297	1599	6	0	3	0	12069	logfile
✔	8TZD	41755	2024-08-05	2023-08-26	3.2	3.53	3.30	3.6	0.009	0.58	0.0	0.04	13.90	0.00	2.183	3.72	0.32	1.9	98.1	0.0	2.98	0.61	0.80	2.33	3.6	0.003	0.50	0.0	0.04	15.15	0.00	2.438	3.97	1.69	1.6	98.4	0.0	3.46	1.16	0.66	0.82	1.69	12175	1587	6	0	4	0	0	logfile
✔	8TZ4	41733	2024-08-08	2023-08-26	3.23	3.64	3.38	3.6	0.005	0.43	0.0	0.03	12.31	0.00	2.199	1.96	0.00	0.9	99.1	0.0	3.71	0.63	0.81	2.63	3.6	0.003	0.48	0.0	0.04	14.71	0.00	2.148	3.31	0.71	1.6	98.4	0.0	3.50	1.69	0.65	0.85	2.43	24408	1599	4	0	1	0	12165	logfile
✔	8TZ7	41736	2024-08-09	2023-08-26	3.0	3.25	3.01	3.3	0.010	0.68	0.0	0.04	12.77	0.00	2.171	2.36	0.48	1.5	98.5	0.0	3.50	0.60	0.78	3.19	3.3	0.003	0.51	0.0	0.03	15.07	0.00	2.331	2.73	1.28	1.9	98.1	0.0	2.77	1.32	0.59	0.80	3.41	24408	1599	6	0	6	0	12069	logfile
✔	8QCB	18328	2024-08-04	2023-08-25	2.8	2.99	2.84	3.0	0.002	0.45	0.0	0.04	12.78	0.00	2.288	3.19	0.00	2.5	97.5	0.0	1.02	0.61	0.76	3.54	3.0	0.002	0.50	0.0	0.04	15.52	0.00	2.484	3.42	1.97	2.2	97.8	0.0	1.23	0.90	0.75	0.88	2.83	11423	1506	5	0	0	0	0	logfile
✔	8TYo	41727	2024-08-07	2023-08-25	2.75	3.05	2.90	3.1	0.003	0.51	0.0	0.04	13.93	0.00	2.100	4.67	0.00	4.3	95.7	0.0	0.72	0.60	0.78	3.50	3.1	0.005	0.59	0.0	0.05	15.34	0.00	2.557	3.89	1.78	4.3	95.7	0.0	0.54	1.21	0.65	0.83	3.27	19458	2451	7	0	29	0	0	logfile
✔	8QCA	18326	2024-08-06	2023-08-25	2.84	3.04	2.86	3.1	0.003	0.46	0.0	0.04	13.84	0.00	2.179	4.24	0.00	2.5	97.5	0.0	0.77	0.63	0.77	3.04	3.1	0.003	0.49	0.0	0.04	15.71	0.00	2.320	12.94	2.06	3.8	96.2	0.0	0.69	0.28	0.70	0.84	2.71	17573	2326	6	4	0	0	117	logfile
✔	8TYQ	41728	2024-08-03	2023-08-25	2.99	2.37	—	3.2	0.007	0.98	3.0	0.05	14.46	0.01	2.195	13.81	0.53	3.7	96.1	0.2	-0.16	0.71	0.64	1.66	3.2	0.003	0.74	0.0	0.04	16.69	0.01	2.427	10.20	0.74	3.8	96.2	0.0	-0.16	1.22	0.77	0.76	2.26	8529	1069	3	0	1	0	0	logfile
✔	8TXW	41707	2024-08-05	2023-08-24	3.6	3.90	3.54	3.7	0.004	0.54	0.0	0.03	26.88	0.00	1.328	7.51	0.14	2.0	98.0	0.0	2.65	0.85	0.87	0.96	3.7	0.005	0.60	0.0	0.03	27.47	0.00	2.102	6.39	1.66	2.4	97.4	0.2	2.32	0.34	0.88	0.89	0.57	12835	857	12	294	0	0	0	logfile
✔	8QBN	18316	2024-08-03	2023-08-24	3.2	3.27	3.06	3.2	0.004	0.59	0.0	0.05	14.30	0.00	2.206	4.37	0.27	4.3	95.7	0.0	-0.65	0.84	0.87	3.32	3.3	0.003	0.52	0.0	0.04	15.28	0.00	2.578	3.06	1.73	4.6	95.4	0.0	-0.31	0.21	0.85	0.89	3.27	7021	897	6	0	3	0	0	logfile
✔	8TXX	41708	2024-08-05	2023-08-24	3.7	3.96	3.60	3.8	0.004	0.55	0.0	0.03	26.69	0.00	1.329	8.69	0.00	2.9	97.1	0.0	2.62	0.86	0.88	1.17	3.8	0.004	0.58	0.0	0.03	27.47	0.00	2.065	7.29	2.31	3.2	96.8	0.0	2.64	1.39	0.87	0.89	0.88	12969	873	12	294	0	0	0	logfile
✔	8TY6	41711	2024-08-04	2023-08-24	3.3	3.52	3.45	3.5	0.002	0.44	0.0	0.04	11.55	0.00	2.144	4.89	2.71	2.1	97.9	0.0	2.36	0.74	0.81	2.58	3.5	0.003	0.58	0.0	0.04	15.26	0.01	2.544	6.40	1.45	1.8	98.2	0.0	2.34	0.61	0.72	0.80	2.24	9678	1260	6	0	0	0	0	logfile
✔	8W4J	37266	2024-08-09	2023-08-24	3.06	3.82	3.13	3.3	0.003	0.48	0.0	0.04	11.81	0.00	2.155	4.34	0.05	4.1	95.8	0.1	0.64	0.87	0.89	2.51	3.3	0.003	0.50	0.0	0.04	13.13	0.00	2.560	3.68	0.87	3.7	96.2	0.0	1.22	0.90	0.88	0.91	2.24	27165	4059	8	0	0	0	0	logfile
✔	8TXV	41706	2024-08-05	2023-08-24	3.8	4.05	3.67	3.9	0.003	0.56	0.0	0.03	26.65	0.00	1.329	7.46	0.14	2.3	97.7	0.0	2.47	0.85	0.86	1.11	3.9	0.004	0.61	0.0	0.03	27.30	0.00	2.130	8.58	3.19	2.5	97.5	0.0	2.51	0.48	0.87	0.88	1.17	12836	857	12	294	0	0	0	logfile
✔	8W41	37260	2024-08-05	2023-08-23	3.54	2.42	3.62	2.0	0.008	0.91	2.0	0.06	15.40	0.01	1.918	17.98	1.63	5.0	94.9	0.1	-1.05	0.72	0.71	2.32	2.1	0.003	0.70	0.0	0.04	16.95	0.00	2.014	11.09	2.33	2.8	97.1	0.1	0.66	0.54	0.71	0.70	1.89	11859	1455	5	0	7	0	0	logfile
✔	8QA4	18298	2024-08-03	2023-08-22	2.8	2.99	2.83	3.0	0.023	2.29	24.0	0.20	15.90	0.01	2.296	3.62	1.45	3.5	96.5	0.0	-2.38	0.63	0.78	3.60	3.0	0.003	0.61	0.0	0.04	17.87	0.00	2.472	6.70	1.21	2.2	97.8	0.0	0.47	1.57	0.59	0.79	2.82	7544	462	6	0	0	28	3724	logfile
✔	8QA6	18300	2024-08-07	2023-08-22	2.91	3.22	3.02	3.2	0.010	1.08	0.0	0.10	17.51	0.01	2.072	6.69	0.52	3.4	96.6	0.0	-0.54	0.60	0.80	3.35	3.2	0.003	0.58	0.0	0.04	17.62	0.00	2.359	5.57	1.25	2.3	97.7	0.0	1.76	0.92	0.61	0.81	2.97	17808	1106	4	0	6	0	8720	logfile

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