Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YZK	39696	2024-08-03	2024-04-07	3.4	2.39	3.43	1.7	0.003	0.76	0.0	0.04	18.28	0.01	2.181	13.45	1.07	8.9	91.1	0.0	-1.21	0.68	0.59	0.53	1.7	0.003	0.72	0.0	0.04	18.37	0.00	2.465	14.16	5.36	7.6	92.3	0.1	-0.85	0.34	0.69	0.62	0.30	6470	866	4	0	0	0	0	logfile
✔	9BC6	44425	2024-08-06	2024-04-07	2.5	2.14	2.43	2.4	0.012	1.77	0.0	0.09	12.25	0.01	2.247	2.87	0.56	2.7	97.3	0.0	-0.64	0.53	0.77	6.12	2.4	0.003	0.57	0.0	0.04	14.85	0.00	2.647	4.51	0.98	1.8	98.2	0.0	2.46	0.47	0.62	0.85	4.03	14972	1936	8	0	12	0	0	logfile
✔	8YZ6	39686	2024-08-09	2024-04-06	4.55	4.63	4.46	4.6	0.004	0.67	0.0	0.05	13.46	0.01	1.194	18.91	0.36	3.8	96.0	0.2	-0.97	0.50	0.60	—	4.5	0.003	0.64	0.0	0.04	13.37	0.00	2.368	11.55	0.00	4.5	95.5	0.1	-1.05	1.00	0.50	0.61	—	24972	3161	13	0	18	0	0	logfile
✔	9BBL	44421	2024-08-04	2024-04-06	2.5	2.33	2.51	2.6	0.011	2.11	2.0	0.10	10.02	0.01	2.489	0.19	0.00	9.7	88.9	1.4	-2.48	0.27	0.65	5.75	2.6	0.002	0.60	0.0	0.05	15.78	0.00	2.573	2.31	0.17	6.8	93.2	0.0	-2.88	0.80	0.39	0.82	5.22	10395	666	9	0	0	0	5301	logfile
✔	9BBM	44422	2024-08-03	2024-04-06	3.2	3.01	3.08	3.2	0.012	2.05	4.0	0.11	13.73	0.01	2.513	0.00	0.51	12.7	82.4	4.9	-3.91	0.33	0.62	3.86	3.2	0.003	0.67	0.0	0.05	16.37	0.00	2.383	6.18	1.28	10.4	88.7	0.9	-3.22	1.30	0.35	0.73	4.15	6966	444	6	0	0	0	3558	logfile
✔	9BAZ	44415	2024-08-03	2024-04-05	2.76	3.45	2.80	3.3	0.004	0.63	0.0	0.04	16.56	0.00	2.117	12.04	0.50	3.2	96.8	0.0	0.19	0.71	0.71	2.69	3.3	0.003	0.64	0.0	0.04	16.88	0.00	2.437	9.22	3.14	3.3	96.7	0.0	0.27	0.30	0.71	0.72	2.49	8283	1090	5	0	1	0	0	logfile
✔	9EWX	50025	2024-08-08	2024-04-05	3.17	2.84	3.08	3.0	0.002	0.42	0.0	0.04	17.57	0.00	2.318	3.78	0.88	0.7	99.3	0.0	2.80	0.68	0.88	2.05	3.0	0.005	0.85	2.0	0.05	16.65	0.00	2.226	6.16	3.35	1.1	98.9	0.0	3.16	0.49	0.67	0.88	1.76	23989	3289	23	0	0	0	0	logfile
✔	9EWQ	50022	2024-08-04	2024-04-04	3.0	3.34	3.05	3.3	0.004	0.57	0.0	0.05	13.59	0.00	2.141	4.88	0.08	5.2	94.8	0.0	-1.34	0.82	0.88	4.02	3.3	0.004	0.57	0.0	0.05	15.08	0.00	2.303	3.67	2.11	4.7	95.3	0.0	-1.15	0.23	0.77	0.89	3.55	11904	1540	4	0	0	0	0	logfile
✔	9BAP	44410	2024-08-03	2024-04-04	2.88	3.32	2.89	3.3	0.003	0.58	0.0	0.04	15.77	0.00	2.159	9.48	0.84	3.3	96.7	0.0	-0.35	0.61	0.67	2.09	3.3	0.004	0.64	0.0	0.04	16.22	0.00	2.529	6.75	4.36	3.4	96.6	0.0	-0.14	0.31	0.62	0.68	2.03	6535	887	3	0	1	0	0	logfile
✔	9B9R	44389	2024-08-03	2024-04-03	3.7	4.67	3.13	4.1	0.002	0.68	0.0	0.04	11.04	0.00	2.150	2.60	0.00	0.9	99.1	0.0	0.53	0.69	0.69	0.82	4.1	0.003	0.68	0.0	0.04	15.55	0.00	2.279	9.53	1.56	1.4	98.6	0.0	1.37	1.44	0.71	0.76	1.53	6928	444	4	0	0	0	3436	logfile
✔	9BA4	44395	2024-08-06	2024-04-03	3.54	2.59	3.62	3.7	0.010	1.24	2.0	0.07	12.63	0.01	2.392	1.86	0.00	5.8	94.2	0.0	-1.80	0.66	0.68	1.73	3.6	0.008	0.96	1.0	0.05	14.19	0.01	2.446	12.07	1.43	4.7	95.3	0.0	-0.73	0.51	0.67	0.64	2.10	15204	1940	10	0	16	0	0	logfile
✔	9BA5	44396	2024-08-04	2024-04-03	3.51	2.38	3.57	3.6	0.011	1.26	2.0	0.07	12.94	0.01	2.389	2.35	0.00	5.3	94.7	0.0	-1.42	0.61	0.60	1.98	3.6	0.004	0.61	0.0	0.04	14.52	0.00	2.592	7.73	1.87	2.5	97.5	0.0	-0.20	1.15	0.65	0.61	1.76	9012	1146	4	0	10	0	0	logfile
✔	9B8X	44361	2024-08-03	2024-04-01	3.0	3.73	2.92	3.4	0.002	0.42	0.0	0.03	9.22	0.00	2.325	4.87	0.40	2.8	97.2	0.0	2.41	0.60	0.86	2.62	3.4	0.003	0.51	0.0	0.04	12.14	0.00	2.308	4.14	1.75	2.8	97.2	0.0	2.43	0.51	0.61	0.88	2.90	7564	993	2	0	2	0	0	logfile
✔	9B8Z	44363	2024-08-03	2024-04-01	3.4	4.06	3.36	3.8	0.004	0.48	0.0	0.03	10.45	0.00	2.014	3.84	0.54	4.2	95.8	0.0	2.44	0.70	0.85	2.22	3.8	0.006	0.64	0.0	0.04	14.28	0.00	2.235	7.07	2.43	4.0	96.0	0.0	2.10	0.54	0.69	0.87	1.70	7509	978	2	0	3	0	0	logfile
✔	9B90	44364	2024-08-10	2024-04-01	3.4	4.22	3.06	3.7	0.004	0.47	0.0	0.04	10.68	0.00	2.154	6.68	0.42	3.4	96.6	0.0	1.44	0.68	0.85	2.70	3.7	0.004	0.64	0.0	0.04	13.21	0.00	2.279	7.91	1.67	3.0	97.0	0.0	2.32	1.26	0.68	0.86	1.75	29720	3928	8	0	12	0	0	logfile
✔	9B91	44365	2024-08-03	2024-04-01	3.3	4.21	3.19	3.7	0.005	0.50	0.0	0.04	11.38	0.00	2.119	6.47	0.28	3.9	96.1	0.0	1.45	0.60	0.83	2.44	3.8	0.005	0.97	2.0	0.04	13.63	0.01	2.323	6.95	2.48	2.8	97.2	0.0	2.12	0.60	0.60	0.86	2.24	7511	993	2	0	3	0	0	logfile
✔	8YWX	39646	2024-08-02	2024-04-01	3.4	3.68	3.38	3.6	0.009	2.56	46.0	0.13	13.58	0.01	1.898	22.95	2.43	3.4	96.6	0.0	-1.55	0.67	0.73	2.13	3.6	0.003	0.79	0.0	0.05	14.88	0.00	2.244	8.78	3.37	5.2	94.8	0.0	-1.53	2.30	0.68	0.76	1.27	4803	623	3	0	0	0	0	logfile
✔	9B8Y	44362	2024-08-10	2024-04-01	3.2	3.89	3.17	3.7	0.004	0.47	0.0	0.03	10.41	0.00	2.120	4.02	0.54	4.3	95.7	0.0	2.44	0.68	0.86	2.86	3.7	0.004	0.59	0.0	0.04	13.63	0.00	2.263	5.99	2.72	3.3	96.7	0.0	2.15	0.55	0.67	0.87	2.25	29980	3912	8	0	12	0	0	logfile
✔	8YWW	39645	2024-08-11	2024-04-01	2.7	2.97	2.79	2.9	0.016	1.90	92.0	0.08	13.25	0.01	0.602	15.05	0.77	4.5	95.3	0.2	-0.39	0.65	0.66	1.46	2.9	0.006	0.75	0.0	0.05	15.40	0.01	2.531	7.63	2.39	5.9	94.1	0.0	-0.84	0.81	0.74	0.83	2.39	31649	4177	8	0	0	0	0	logfile
✔	9B94	44368	2024-08-10	2024-04-01	3.1	3.87	2.81	3.1	0.004	0.49	0.0	0.03	10.72	0.00	2.194	3.94	0.82	3.7	96.3	0.0	2.22	0.70	0.90	2.98	3.1	0.003	0.48	0.0	0.03	12.50	0.00	2.333	4.68	1.10	2.9	97.0	0.1	2.39	1.23	0.70	0.89	2.46	29516	3864	8	0	4	0	0	logfile

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