Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9B34	44125	2024-08-02	2024-03-18	3.58	3.87	3.58	3.9	0.007	1.47	0.0	0.08	12.86	0.01	2.121	8.00	0.49	23.6	74.5	1.9	-5.95	0.68	0.68	1.73	3.8	0.006	1.49	1.0	0.06	16.83	0.01	2.041	20.49	6.17	23.0	76.0	1.1	-4.29	2.01	0.72	0.73	0.92	3619	474	4	0	4	0	0	logfile
✔	9B33	44124	2024-08-02	2024-03-18	4.07	4.25	4.00	4.2	0.007	1.56	0.0	0.08	13.12	0.01	2.141	8.98	0.49	23.2	75.3	1.5	-6.09	0.63	0.62	—	4.1	0.004	1.00	0.0	0.05	12.87	0.01	2.033	18.94	0.00	22.1	77.0	0.9	-4.65	1.21	0.69	0.69	—	3619	474	4	0	4	0	0	logfile
✔	9B35	44128	2024-08-05	2024-03-18	3.4	3.76	3.53	3.7	0.008	1.24	0.0	0.06	10.75	0.01	2.244	5.09	0.65	11.7	87.4	0.9	-5.51	0.68	0.81	3.08	3.7	0.003	0.75	0.0	0.04	14.39	0.00	2.479	9.58	1.68	10.4	89.5	0.1	-0.70	1.58	0.67	0.81	1.91	14132	1780	8	0	0	0	0	logfile
✔	9B39	44132	2024-08-09	2024-03-18	3.84	4.26	4.00	4.0	0.009	1.54	0.0	0.07	17.94	0.01	2.184	7.62	0.44	15.3	83.2	1.5	-5.60	0.71	0.80	1.55	4.0	0.004	0.93	0.0	0.05	14.51	0.00	2.382	13.44	1.94	13.7	86.0	0.4	-2.15	1.57	0.71	0.80	1.10	27522	3372	22	0	58	0	0	logfile
✔	9B27	44099	2024-08-08	2024-03-14	3.51	4.14	3.65	3.8	0.004	0.82	0.0	0.05	15.44	0.01	1.519	2.38	0.23	3.7	96.1	0.1	-3.27	0.79	0.79	1.00	3.7	0.003	0.67	0.0	0.04	16.05	0.00	1.900	7.11	0.78	4.3	95.7	0.0	0.82	1.68	0.80	0.81	0.89	23828	2991	14	0	12	0	0	logfile
✔	9EoH	19855	2024-08-02	2024-03-14	2.8	3.08	2.71	3.1	0.009	1.45	6.0	0.09	11.76	0.01	2.465	4.31	0.00	9.7	90.3	0.0	-3.95	0.48	0.89	6.19	3.1	0.005	0.82	0.0	0.05	17.35	0.00	2.533	7.61	2.82	4.9	95.1	0.0	-2.62	1.14	0.42	0.88	5.87	3414	444	6	0	0	0	0	logfile
✔	9Eo7	19846	2024-08-02	2024-03-14	2.8	2.99	2.48	3.0	0.009	1.59	1.0	0.10	12.22	0.01	2.583	3.31	1.47	6.7	93.3	0.0	-4.16	0.28	0.88	5.19	3.0	0.004	0.60	0.0	0.05	14.11	0.00	2.525	6.71	1.47	1.3	98.7	0.0	-1.88	0.68	0.27	0.88	3.98	595	77	1	0	0	0	0	logfile
✔	9EoE	19852	2024-08-02	2024-03-14	2.3	2.15	2.26	2.2	0.009	1.54	2.0	0.10	14.88	0.01	2.621	4.14	4.41	8.0	92.0	0.0	-3.08	0.21	0.80	6.35	2.2	0.004	0.72	0.0	0.05	16.64	0.01	2.632	2.51	2.94	5.3	94.7	0.0	-1.85	1.25	0.27	0.83	7.06	595	77	1	0	0	0	0	logfile
✔	9EoG	19854	2024-08-02	2024-03-14	3.0	3.00	2.79	3.2	0.009	1.63	6.0	0.10	12.85	0.01	2.445	5.03	4.48	6.7	93.3	0.0	-4.10	0.39	0.90	4.14	3.2	0.003	0.77	0.0	0.05	15.56	0.00	2.601	7.40	0.75	4.7	95.3	0.0	-1.64	1.10	0.36	0.88	3.00	3522	462	6	0	0	0	0	logfile
✔	9Eo9	19849	2024-08-02	2024-03-14	3.3	3.30	3.20	3.4	0.016	1.57	0.0	0.10	14.49	0.01	2.638	3.72	5.88	7.3	92.7	0.0	-4.62	0.25	0.84	3.70	3.5	0.003	0.79	0.0	0.05	14.70	0.00	2.549	3.75	2.21	2.0	98.0	0.0	-2.43	1.06	0.29	0.79	3.65	1190	154	2	0	0	0	0	logfile
✔	9Eo4	19845	2024-08-03	2024-03-14	2.66	2.89	2.68	3.0	0.006	0.72	0.0	0.04	15.98	0.02	1.915	5.57	0.87	1.8	98.2	0.0	1.45	0.49	0.83	4.04	3.0	0.003	0.49	0.0	0.04	14.95	0.00	2.079	4.68	0.66	0.7	99.3	0.0	1.55	0.82	0.56	0.87	4.55	8781	546	2	0	7	4	4322	logfile
✔	9ENE	19832	2024-08-03	2024-03-12	3.15	3.87	3.19	3.4	0.004	0.64	0.0	0.06	22.56	0.01	2.233	7.49	1.04	5.9	94.1	0.0	-0.77	0.89	0.87	2.75	3.4	0.003	0.60	0.0	0.06	22.19	0.00	2.263	3.26	2.25	4.4	95.6	0.0	-0.72	0.26	0.89	0.87	2.14	8484	658	4	146	0	0	0	logfile
✔	9B0K	44045	2024-08-08	2024-03-12	3.03	3.69	—	3.2	0.005	0.96	0.0	0.06	13.38	0.01	2.097	1.93	0.00	3.0	97.0	0.0	-2.06	0.84	0.83	2.02	3.2	0.003	0.63	0.0	0.04	14.60	0.00	1.970	6.70	0.54	3.8	96.2	0.0	1.24	0.43	0.84	0.84	1.65	23896	3020	14	0	12	0	0	logfile
✔	9ENF	19833	2024-08-03	2024-03-12	2.97	4.02	3.10	3.1	0.003	0.61	0.0	0.04	24.22	0.00	2.114	15.41	0.00	7.6	92.4	0.0	-1.68	0.78	0.64	1.13	3.1	0.004	0.97	1.0	0.04	24.30	0.00	1.680	12.65	1.93	6.1	93.9	0.0	-2.06	0.97	0.79	0.66	0.69	8235	530	4	182	0	0	0	logfile
✔	9ENC	19831	2024-08-02	2024-03-12	3.36	4.12	3.44	3.9	0.002	0.51	0.0	0.04	21.40	0.00	2.232	3.79	0.20	5.3	94.7	0.0	-0.18	0.88	0.87	2.37	3.9	0.002	0.50	0.0	0.03	21.61	0.00	2.485	3.18	1.40	4.7	95.3	0.0	0.28	1.30	0.87	0.86	1.67	6249	566	3	75	0	0	0	logfile
✔	9ENB	19830	2024-08-03	2024-03-12	2.66	3.33	2.75	3.1	0.006	0.55	0.0	0.04	22.37	0.00	2.149	4.96	0.72	4.7	95.3	0.0	-0.08	0.86	0.88	4.12	3.1	0.005	0.55	0.0	0.04	22.10	0.00	2.097	3.35	0.54	4.4	95.6	0.0	0.70	0.87	0.85	0.87	3.88	8264	636	6	144	6	0	0	logfile
✔	9EMC	19817	2024-08-06	2024-03-11	3.26	3.86	3.07	3.6	0.011	1.34	0.0	0.08	18.59	0.01	2.075	5.04	1.44	2.5	97.5	0.0	-3.73	0.75	0.68	0.35	3.6	0.004	0.77	1.0	0.04	17.63	0.00	1.938	6.26	1.62	2.6	97.4	0.0	1.41	1.14	0.82	0.90	1.95	15489	1977	12	0	12	0	0	logfile
✔	9AZQ	44019	2024-08-08	2024-03-11	3.82	5.23	—	4.3	0.005	0.88	1.0	0.05	15.04	0.01	2.075	2.67	0.00	3.2	96.8	0.0	-2.89	0.87	0.85	0.44	4.3	0.005	0.82	0.0	0.04	15.02	0.00	1.805	16.54	0.51	4.7	95.3	0.0	0.38	1.26	0.87	0.87	0.65	23563	2980	16	0	14	0	0	logfile
✔	9AZ4	44012	2024-08-08	2024-03-10	3.37	4.52	—	2.1	0.007	1.06	0.0	0.06	13.82	0.01	2.069	2.58	0.00	3.5	96.4	0.0	-2.13	0.89	0.84	1.76	2.1	0.003	0.62	0.0	0.04	14.49	0.00	1.960	7.00	0.35	3.1	96.9	0.0	1.34	0.37	0.89	0.85	1.41	23865	3015	14	0	12	0	0	logfile
✔	9AYY	44002	2024-08-09	2024-03-08	3.1	3.36	3.19	3.4	0.005	0.73	0.0	0.05	14.35	0.01	2.284	3.67	0.00	4.1	95.9	0.0	-1.28	0.65	0.78	2.46	3.4	0.003	0.53	0.0	0.04	14.99	0.00	2.379	4.69	1.14	3.9	96.1	0.0	0.02	0.32	0.67	0.80	2.34	24813	3123	6	0	30	0	0	logfile

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