Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YWX	39646	2024-09-23	2024-04-01	3.4	3.68	3.38	3.6	0.009	2.56	46.0	0.13	13.58	0.01	1.898	22.95	2.43	3.4	96.6	0.0	-1.55	0.67	0.73	2.13	3.6	0.003	0.79	0.0	0.05	14.88	0.00	2.244	8.78	3.37	5.2	94.8	0.0	-1.53	2.30	0.68	0.76	1.27	4803	623	3	0	0	0	0	logfile
✔	9B8Q	44352	2024-09-26	2024-03-31	3.8	4.19	4.05	4.2	0.005	0.62	0.0	0.04	16.29	0.00	2.034	10.39	3.66	4.3	95.7	0.1	2.27	0.54	0.70	0.62	4.1	0.004	0.66	0.0	0.04	17.48	0.00	2.446	8.99	5.00	3.4	96.6	0.1	3.18	0.56	0.54	0.71	0.36	12348	1886	9	0	0	0	0	logfile
✔	9B8T	44358	2024-09-27	2024-03-31	2.95	3.15	3.00	3.1	0.005	0.96	0.0	0.05	18.83	0.01	2.085	6.98	4.30	4.6	95.4	0.0	-1.97	0.67	0.69	1.20	3.1	0.005	0.75	0.0	0.04	19.26	0.00	2.206	14.30	4.18	4.2	95.8	0.0	-0.91	1.00	0.69	0.71	1.42	16399	1929	7	50	3	0	0	logfile
✔	8YW5	39623	2024-09-24	2024-03-29	2.84	3.09	2.86	3.1	0.003	0.50	0.0	0.04	11.96	0.00	2.064	4.62	3.79	4.6	95.4	0.0	-0.41	0.61	0.80	3.98	3.1	0.003	0.58	0.0	0.04	14.97	0.00	2.532	4.16	2.93	4.5	95.5	0.0	1.36	0.32	0.61	0.81	3.29	8937	1157	6	0	0	0	0	logfile
✔	8YW4	39622	2024-09-24	2024-03-29	3.26	3.55	3.31	3.5	0.004	0.56	0.0	0.04	18.35	0.00	2.190	7.94	0.33	5.2	94.6	0.2	-0.25	0.56	0.66	0.32	3.5	0.006	0.71	0.0	0.04	18.44	0.00	2.453	7.64	3.47	5.8	94.0	0.2	0.65	1.17	0.67	0.85	1.96	8619	1082	6	0	0	0	0	logfile
✔	8YW3	39621	2024-09-25	2024-03-29	2.68	3.44	2.77	3.3	0.004	0.66	0.0	0.04	17.97	0.00	2.163	11.08	7.83	3.2	96.8	0.0	0.63	0.66	0.77	2.00	3.3	0.004	0.65	0.0	0.04	17.82	0.00	2.502	7.62	3.56	4.0	96.0	0.0	0.65	0.27	0.66	0.77	2.41	9231	1160	6	0	0	0	0	logfile
✔	9EUY	19989	2024-09-24	2024-03-28	2.95	3.23	3.00	3.3	0.003	0.74	0.0	0.05	11.99	0.01	2.311	3.09	0.24	1.8	98.2	0.0	0.41	0.69	0.83	3.53	3.3	0.003	0.93	0.0	0.04	16.08	0.00	1.321	6.69	2.27	1.6	98.4	0.0	1.77	0.65	0.67	0.83	2.64	7846	984	4	0	2	0	0	logfile
✔	9EUT	19981	2024-09-25	2024-03-28	2.95	3.19	—	3.1	0.005	0.76	0.0	0.05	12.33	0.01	2.158	3.55	0.56	2.2	97.8	0.0	-0.11	0.71	0.78	2.76	3.2	0.003	0.67	0.0	0.04	15.44	0.00	2.566	7.55	1.53	1.7	98.3	0.0	1.59	1.13	0.72	0.80	2.65	11456	1456	4	0	2	0	0	logfile
✔	9EUP	19979	2024-09-27	2024-03-27	3.0	3.45	3.02	3.4	0.010	0.82	0.0	0.05	13.77	0.01	2.130	5.45	0.12	3.3	96.7	0.0	-1.46	0.67	0.83	4.18	3.4	0.004	0.57	0.0	0.04	14.30	0.01	2.119	4.72	1.11	3.1	96.9	0.0	0.43	0.34	0.56	0.77	3.49	14966	965	4	0	6	0	7364	logfile
✔	8YUU	39583	2024-09-24	2024-03-27	2.7	2.89	2.72	2.9	0.005	0.83	0.0	0.06	10.47	0.00	2.076	10.31	0.00	3.5	96.5	0.0	1.48	0.68	0.83	4.11	2.9	0.002	0.54	0.0	0.04	14.26	0.00	2.551	4.23	1.13	1.8	98.2	0.0	2.08	0.57	0.65	0.82	3.39	9037	1145	6	0	2	0	0	logfile
✔	9B6E	44256	2024-09-25	2024-03-25	2.91	3.48	2.86	3.3	0.005	0.77	0.0	0.05	12.59	0.00	1.988	6.27	0.15	4.5	95.5	0.0	1.79	0.68	0.77	2.75	3.3	0.003	0.52	0.0	0.04	13.93	0.00	2.407	5.88	2.39	5.0	95.0	0.0	1.79	0.64	0.69	0.79	2.76	55244	3716	8	0	20	0	26380	logfile
✔	9B6D	44255	2024-09-25	2024-03-25	3.3	3.65	3.19	3.6	0.005	0.82	0.0	0.06	12.33	0.00	2.027	6.39	0.49	3.1	96.9	0.0	1.86	0.72	0.81	2.12	3.5	0.005	0.64	0.0	0.04	12.87	0.00	2.244	3.94	1.28	5.3	94.7	0.0	1.95	1.23	0.73	0.83	2.45	54584	3732	8	0	20	0	25920	logfile
✔	9B6i	44260	2024-09-25	2024-03-25	3.26	3.70	3.19	3.6	0.005	0.79	0.0	0.05	12.46	0.00	2.031	9.07	0.17	2.4	97.6	0.0	1.86	0.67	0.80	1.94	3.6	0.002	0.48	0.0	0.04	13.67	0.00	2.404	5.34	1.49	3.4	96.6	0.0	1.75	0.47	0.63	0.76	1.98	55320	3424	8	0	24	0	27072	logfile
✔	9B6G	44258	2024-09-25	2024-03-25	2.81	3.36	2.89	3.3	0.007	0.82	0.0	0.06	11.77	0.00	2.108	5.44	0.15	2.6	97.4	0.0	2.73	0.64	0.74	3.07	3.2	0.004	0.55	0.0	0.04	13.77	0.00	2.310	6.27	1.52	4.2	95.7	0.1	2.04	0.63	0.68	0.79	2.57	54152	3660	8	0	28	0	25668	logfile
✔	9B6H	44259	2024-09-25	2024-03-25	2.76	3.38	2.76	3.2	0.007	0.87	0.0	0.05	14.01	0.00	1.507	8.91	0.44	3.2	96.8	0.0	1.49	0.69	0.77	2.65	3.2	0.004	0.54	0.0	0.04	14.11	0.00	2.322	4.83	0.80	4.1	95.8	0.1	2.34	0.52	0.70	0.79	2.67	55692	3736	8	0	24	0	26696	logfile
✔	9ERM	19926	2024-09-23	2024-03-24	2.3	2.49	2.28	2.5	0.009	1.43	0.0	0.09	11.15	0.01	2.641	0.85	3.03	4.1	95.9	0.0	-2.04	0.45	0.94	7.10	2.5	0.002	0.62	0.0	0.05	16.47	0.00	2.640	3.07	1.52	2.5	97.5	0.0	-1.27	0.54	0.43	0.93	6.40	2870	375	5	0	0	0	0	logfile
✔	9ERN	19927	2024-09-23	2024-03-24	2.5	2.72	2.52	2.6	0.009	1.38	0.0	0.08	11.58	0.01	2.539	0.00	3.03	2.7	97.3	0.0	-2.81	0.43	0.92	6.38	2.7	0.004	0.65	0.0	0.05	16.39	0.00	2.595	1.99	1.26	1.1	98.9	0.0	-1.72	0.98	0.43	0.91	5.64	3444	450	6	0	0	0	0	logfile
✔	9B60	44233	2024-09-25	2024-03-23	2.57	2.37	2.54	2.6	0.002	0.45	0.0	0.03	16.62	0.00	2.245	4.52	1.66	3.0	97.0	0.0	3.66	0.54	0.78	3.02	2.6	0.003	0.51	0.0	0.04	16.82	0.00	2.583	4.33	2.31	3.2	96.8	0.0	3.71	0.86	0.56	0.81	3.08	10461	1348	8	0	0	0	0	logfile
✔	9B68	44249	2024-09-28	2024-03-23	3.6	3.60	3.54	3.6	0.003	0.61	0.0	0.04	16.03	0.00	2.203	6.44	0.27	2.9	97.1	0.0	-0.07	0.73	0.82	3.47	3.6	0.002	0.55	0.0	0.04	15.21	0.00	2.448	5.02	2.31	2.8	97.2	0.0	0.46	0.40	0.74	0.83	3.03	11364	1496	9	0	11	0	0	logfile
✔	9B61	44234	2024-09-28	2024-03-23	2.81	3.15	2.76	3.1	0.005	0.80	0.0	0.04	17.30	0.00	2.154	11.12	3.10	2.7	97.3	0.0	1.40	0.63	0.78	1.89	3.1	0.003	0.69	0.0	0.04	17.27	0.00	2.502	9.67	2.33	2.5	97.5	0.0	1.61	0.40	0.65	0.82	1.88	18447	2384	8	0	0	0	0	logfile

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