Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VZo	43684	2024-09-23	2024-02-12	2.49	2.66	2.50	2.7	0.013	1.82	1.0	0.10	14.97	0.03	2.347	6.25	3.67	4.0	96.0	0.0	-2.36	0.56	0.81	3.92	2.6	0.005	0.64	0.0	0.05	15.30	0.01	2.597	5.00	1.54	2.6	97.4	0.0	1.92	0.50	0.67	0.89	4.03	4796	615	4	0	1	0	0	logfile
✔	8VZN	43683	2024-09-23	2024-02-12	2.77	2.94	2.79	2.9	0.015	1.53	0.0	0.08	15.04	0.04	2.330	3.53	2.81	4.9	95.1	0.0	-3.34	0.61	0.85	3.75	2.9	0.004	0.60	0.0	0.04	15.43	0.00	2.616	4.92	1.20	2.0	98.0	0.0	1.67	0.96	0.61	0.87	3.86	4656	596	4	0	1	0	0	logfile
✔	8VYM	43667	2024-09-28	2024-02-09	3.4	3.70	3.67	3.7	0.002	0.44	0.0	0.04	11.25	0.00	2.230	6.31	0.66	3.8	96.1	0.0	-0.34	0.75	0.87	2.98	3.7	0.003	0.58	0.0	0.04	13.87	0.00	2.453	6.73	1.99	4.2	95.8	0.0	0.28	1.05	0.74	0.87	2.76	18289	2218	30	0	45	0	0	logfile
✔	8VYN	43672	2024-09-29	2024-02-09	2.8	3.16	—	3.2	0.004	0.57	0.0	0.05	12.54	0.01	2.237	3.35	0.00	5.0	95.0	0.0	-0.26	0.73	0.85	4.72	3.2	0.004	0.61	0.0	0.04	15.00	0.00	2.381	5.01	3.45	3.3	96.7	0.0	-0.03	0.51	0.59	0.82	4.17	23763	2958	27	0	33	0	0	logfile
✔	8VYG	43660	2024-09-23	2024-02-08	3.1	3.18	3.20	3.3	0.010	1.22	0.0	0.07	10.29	0.00	2.515	0.48	0.30	2.9	97.1	0.0	0.68	0.51	0.68	2.78	3.2	0.003	0.65	0.0	0.04	15.84	0.00	2.538	5.77	1.79	2.5	97.5	0.0	0.09	1.48	0.54	0.77	2.67	3204	416	4	0	1	0	0	logfile
✔	8VYF	43659	2024-09-23	2024-02-08	3.2	3.37	3.23	3.4	0.010	1.27	0.0	0.08	11.20	0.00	2.519	0.21	0.00	3.1	96.9	0.0	1.25	0.68	0.81	4.82	3.4	0.006	0.67	0.0	0.05	12.54	0.00	2.537	2.75	2.59	3.1	96.9	0.0	0.56	0.53	0.68	0.88	5.21	5132	715	9	0	12	0	0	logfile
✔	8Y95	39070	2024-09-24	2024-02-06	3.24	3.62	3.40	3.6	0.003	0.59	0.0	0.04	11.30	0.01	1.402	11.16	4.43	5.0	95.0	0.0	-1.89	0.50	0.65	1.63	3.6	0.003	0.64	0.0	0.04	15.01	0.00	2.323	10.39	4.01	3.6	96.4	0.0	0.82	1.10	0.56	0.79	2.52	9018	1124	4	0	6	0	0	logfile
✔	8Y93	39068	2024-09-24	2024-02-06	3.0	3.45	3.17	3.4	0.003	0.60	0.0	0.04	11.79	0.00	2.127	7.36	5.15	2.2	97.8	0.0	-1.85	0.51	0.68	2.29	3.4	0.003	0.66	0.0	0.04	15.49	0.00	2.300	8.02	2.84	3.2	96.8	0.0	1.18	1.07	0.61	0.82	1.76	9055	1130	3	0	3	0	0	logfile
✔	8Y9C	39073	2024-09-26	2024-02-06	3.0	3.24	3.07	3.2	0.003	0.49	0.0	0.04	14.35	0.00	2.211	7.37	0.46	3.7	96.3	0.0	1.00	0.71	0.78	2.73	3.2	0.004	0.63	0.0	0.05	16.33	0.00	2.284	5.83	2.37	3.6	96.4	0.0	0.83	0.66	0.73	0.82	2.95	13400	1674	3	0	1	0	0	logfile
✔	8VXY	43643	2024-09-26	2024-02-06	3.19	3.47	3.32	3.5	0.003	0.81	0.0	0.06	16.14	0.00	2.215	14.40	0.00	4.8	95.2	0.0	-0.15	0.61	0.62	1.03	3.5	0.003	0.67	0.0	0.04	18.47	0.00	2.528	15.19	1.20	4.3	95.7	0.0	-0.71	1.42	0.65	0.67	0.92	12324	1406	5	62	1	0	0	logfile
✔	8Y8K	39050	2024-09-24	2024-02-06	2.89	3.09	2.92	3.2	0.003	0.54	0.0	0.04	16.02	0.01	2.248	3.63	2.28	2.5	97.5	0.0	1.68	0.61	0.80	1.21	3.1	0.004	0.54	0.0	0.04	16.48	0.01	2.612	3.08	2.62	2.5	97.5	0.0	1.91	0.31	0.57	0.79	1.38	8052	1028	2	0	0	0	0	logfile
✔	8Y94	39069	2024-09-24	2024-02-06	3.29	3.74	3.42	3.7	0.002	0.46	0.0	0.03	9.27	0.00	2.295	5.05	3.15	2.1	97.9	0.0	-1.50	0.52	0.64	1.26	3.7	0.003	0.69	0.0	0.04	15.05	0.00	2.532	11.98	2.42	2.8	97.2	0.0	0.92	1.17	0.59	0.78	1.00	9032	1130	2	0	0	0	0	logfile
✔	8Y9B	39072	2024-09-26	2024-02-06	3.2	3.27	3.08	3.3	0.004	0.54	0.0	0.05	13.74	0.00	2.077	5.44	0.00	3.3	96.7	0.0	0.47	0.71	0.82	3.00	3.3	0.002	0.46	0.0	0.04	15.62	0.00	2.135	3.70	0.99	2.7	97.2	0.1	1.40	0.38	0.72	0.85	2.57	13380	1672	3	0	1	0	0	logfile
✔	8Y86	39035	2024-09-24	2024-02-06	2.75	3.36	2.84	3.3	0.003	0.54	0.0	0.04	15.01	0.00	2.290	2.24	1.25	1.9	98.1	0.0	1.76	0.56	0.81	2.34	3.3	0.004	0.55	0.0	0.04	15.81	0.00	2.594	1.81	2.05	2.0	98.0	0.0	2.00	0.19	0.54	0.79	2.40	8060	1028	4	0	2	0	0	logfile
✔	8Y84	39032	2024-09-23	2024-02-05	2.98	3.18	2.95	3.2	0.007	1.15	0.0	0.06	15.18	0.01	2.269	4.95	0.00	1.5	98.5	0.0	-1.59	0.43	0.76	2.26	3.2	0.005	0.72	0.0	0.04	16.63	0.00	2.571	6.29	1.69	1.9	98.1	0.0	1.80	0.31	0.43	0.78	1.62	2168	268	5	0	1	0	0	logfile
✔	8Y85	39034	2024-09-24	2024-02-05	2.73	2.89	2.74	3.0	0.004	0.76	4.0	0.04	16.59	0.01	2.314	3.19	0.68	2.5	97.5	0.0	2.04	0.59	0.78	2.03	3.0	0.004	0.62	0.0	0.04	16.90	0.01	2.609	2.47	1.82	2.7	97.3	0.0	1.98	0.26	0.59	0.79	1.94	8116	1028	4	0	4	0	0	logfile
✔	8RWY	19568	2024-09-26	2024-02-05	3.02	3.74	3.11	3.5	0.003	0.49	0.0	0.04	13.42	0.00	2.218	5.36	0.07	2.2	97.6	0.1	1.41	0.88	0.90	3.43	3.5	0.003	0.54	0.0	0.04	14.15	0.00	2.592	3.55	0.42	2.2	97.8	0.1	1.12	0.25	0.88	0.91	3.08	14109	1837	12	0	6	0	0	logfile
✔	8Y81	39029	2024-09-24	2024-02-05	2.89	3.13	2.95	3.2	0.007	1.00	0.0	0.06	16.04	0.01	2.274	5.39	0.10	3.8	96.1	0.1	-1.30	0.64	0.78	2.56	3.2	0.004	0.59	0.0	0.04	16.02	0.00	2.462	8.81	1.72	3.9	96.1	0.0	0.50	1.13	0.57	0.77	2.43	8915	1077	13	0	14	0	0	logfile
✔	8RWK	19549	2024-09-27	2024-02-05	3.8	3.22	3.89	3.7	0.020	1.77	4.0	0.10	13.76	0.01	2.244	5.27	0.00	1.4	98.6	0.0	0.22	0.65	0.71	2.53	3.6	0.004	0.65	0.0	0.05	16.25	0.00	2.361	5.60	2.08	3.0	97.0	0.0	0.77	2.41	0.74	0.78	2.31	15416	1980	8	0	4	0	0	logfile
✔	8VXC	43616	2024-09-25	2024-02-04	2.93	2.24	2.94	1.9	0.003	0.51	0.0	0.04	14.76	0.00	2.206	9.15	0.00	3.2	96.8	0.0	0.25	0.75	0.72	1.60	1.9	0.004	0.65	0.0	0.04	17.37	0.00	2.472	10.81	1.79	4.1	95.9	0.0	0.30	0.60	0.75	0.73	1.72	9390	1139	3	22	0	0	0	logfile

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