Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CEP	45506	2024-09-28	2024-06-26	3.13	3.60	3.12	3.2	0.007	0.75	0.0	0.04	13.53	0.00	2.092	5.97	0.01	1.3	98.6	0.1	0.78	0.56	0.89	3.19	3.2	0.004	0.48	0.0	0.03	14.39	0.00	2.560	4.03	0.39	1.0	99.0	0.0	4.62	0.87	0.56	0.88	2.53	71669	10027	37	0	0	0	0	logfile
✔	9FTJ	50747	2024-09-26	2024-06-24	4.0	4.14	3.87	4.0	0.007	0.64	0.0	0.05	15.42	0.00	2.304	5.97	0.00	5.1	94.9	0.0	-0.50	0.75	0.88	—	4.0	0.004	0.59	0.0	0.04	16.05	0.00	2.565	5.08	5.00	3.7	96.3	0.0	0.46	0.92	0.74	0.87	—	12045	1570	5	0	0	0	0	logfile
✔	9FTH	50745	2024-09-29	2024-06-24	2.9	3.12	2.93	3.1	0.002	0.46	0.0	0.04	15.69	0.00	2.029	3.58	0.00	2.4	97.6	0.0	0.58	0.77	0.88	3.17	3.1	0.004	0.79	0.0	0.04	16.27	0.00	2.386	4.30	2.20	5.1	94.9	0.0	0.31	0.96	0.78	0.89	3.48	22780	3010	5	0	0	0	0	logfile
✔	9FTi	50746	2024-09-28	2024-06-24	3.5	3.01	3.49	3.0	0.005	0.60	0.0	0.04	16.70	0.00	2.028	5.56	0.27	5.7	94.3	0.0	-1.77	0.70	0.80	2.93	3.0	0.005	0.81	1.0	0.05	17.38	0.00	2.388	4.88	4.72	3.5	96.5	0.0	-0.66	0.93	0.68	0.77	2.11	19935	2780	5	0	0	0	0	logfile
✔	9FTG	50744	2024-09-29	2024-06-24	3.1	3.38	3.05	3.3	0.003	0.48	0.0	0.04	15.40	0.00	2.032	4.17	0.00	6.2	93.8	0.0	-0.54	0.71	0.90	3.62	3.3	0.002	0.54	0.0	0.04	15.83	0.00	2.374	3.24	2.88	5.9	94.1	0.0	0.29	0.34	0.67	0.89	3.28	21205	2795	10	0	5	0	0	logfile
✔	9iJD	60628	2024-09-25	2024-06-22	2.76	3.23	2.98	3.2	0.006	0.78	1.0	0.05	16.98	0.01	2.181	14.24	1.73	3.1	96.8	0.2	0.20	0.55	0.73	2.81	3.2	0.002	0.58	0.0	0.04	17.63	0.00	2.473	6.31	3.05	2.8	97.2	0.0	0.82	1.15	0.56	0.74	2.12	9371	1227	7	0	1	0	0	logfile
✔	9iJE	60629	2024-09-25	2024-06-22	2.34	2.89	2.69	2.9	0.005	0.70	0.0	0.05	15.99	0.01	2.240	6.01	2.15	2.2	97.8	0.0	1.09	0.60	0.79	3.56	2.9	0.003	0.55	0.0	0.04	16.72	0.00	2.562	2.71	2.86	2.2	97.8	0.0	1.57	0.37	0.60	0.80	3.36	9340	1227	7	0	1	1	0	logfile
✔	9CC0	45430	2024-09-30	2024-06-20	3.31	3.66	3.24	3.5	0.003	0.54	0.0	0.04	13.25	0.00	1.995	5.51	0.08	1.9	98.1	0.0	1.17	0.83	0.85	2.83	3.5	0.004	0.57	0.0	0.04	14.72	0.00	1.912	5.16	1.17	1.9	98.1	0.0	1.35	0.32	0.84	0.88	2.27	24603	3128	13	0	22	0	0	logfile
✔	8ZYQ	60576	2024-09-24	2024-06-18	3.18	3.41	3.17	3.4	0.005	0.59	0.0	0.04	16.95	0.00	2.234	6.78	0.46	2.8	97.2	0.0	1.48	0.57	0.85	2.58	3.4	0.003	0.54	0.0	0.04	16.19	0.00	2.535	5.53	2.28	2.7	97.3	0.0	1.80	0.36	0.55	0.83	2.58	6329	796	5	0	1	0	0	logfile
✔	8ZYo	60574	2024-09-23	2024-06-18	3.29	3.53	3.28	3.5	0.005	0.68	0.0	0.04	17.02	0.00	2.227	8.41	0.46	2.6	97.4	0.0	1.70	0.56	0.85	1.85	3.5	0.004	0.58	0.0	0.04	16.49	0.00	2.540	6.82	4.18	3.1	96.9	0.0	1.94	0.31	0.58	0.85	1.94	6238	785	5	0	1	0	0	logfile
✔	8ZYN	60573	2024-09-24	2024-06-18	3.27	3.51	3.26	3.5	0.003	0.56	0.0	0.04	15.25	0.00	2.256	5.78	0.86	2.1	97.9	0.0	1.18	0.59	0.83	1.15	3.5	0.003	0.55	0.0	0.04	15.72	0.00	2.627	5.49	3.03	2.5	97.5	0.0	1.36	0.33	0.58	0.83	1.42	6640	840	4	0	0	0	0	logfile
✔	9CA1	45379	2024-09-24	2024-06-16	3.26	2.47	3.27	2.2	0.004	0.59	0.0	0.04	15.56	0.01	2.120	5.31	0.00	4.2	95.7	0.1	0.28	0.77	0.80	2.18	2.2	0.003	0.59	0.0	0.04	17.49	0.00	2.111	5.23	3.60	3.7	96.3	0.0	0.26	0.31	0.79	0.83	1.90	6265	773	5	10	2	0	0	logfile
✔	9C9Y	45376	2024-09-23	2024-06-16	3.35	2.51	3.35	2.2	0.005	0.66	0.0	0.04	16.02	0.01	2.041	6.79	0.15	6.0	93.9	0.1	-0.01	0.77	0.79	2.18	2.2	0.004	0.65	0.0	0.04	18.29	0.00	2.062	4.93	2.54	4.7	95.3	0.0	0.16	0.39	0.78	0.82	1.64	6225	773	4	8	2	0	0	logfile
✔	9CA0	45378	2024-09-23	2024-06-16	3.48	2.47	3.49	2.2	0.004	0.58	0.0	0.04	14.95	0.01	2.104	6.67	0.15	4.2	95.8	0.0	-0.73	0.77	0.78	2.35	2.2	0.004	0.57	0.0	0.04	17.36	0.00	2.492	6.35	2.25	3.9	96.1	0.0	-0.52	0.35	0.79	0.82	1.63	6265	773	5	10	1	0	0	logfile
✔	8ZX6	60539	2024-09-23	2024-06-13	3.5	3.02	2.57	3.5	0.004	0.77	0.0	0.05	12.49	0.00	2.338	7.64	0.00	2.5	97.5	0.0	-4.38	0.32	0.81	5.08	3.5	0.005	0.72	0.0	0.05	13.99	0.00	2.640	5.23	1.52	9.2	90.8	0.0	-3.33	0.71	0.35	0.83	4.87	3468	456	6	0	0	0	0	logfile
✔	8ZWH	60527	2024-09-23	2024-06-13	2.5	3.26	—	3.0	0.011	0.91	0.0	0.06	9.45	0.00	2.284	18.21	0.00	3.8	96.2	0.0	-4.12	0.42	0.85	2.37	3.0	0.002	0.54	0.0	0.05	11.67	0.00	2.575	6.43	0.88	5.0	95.0	0.0	-3.11	1.18	0.43	0.84	3.55	2268	330	6	0	0	0	0	logfile
✔	8ZWL	60532	2024-09-23	2024-06-13	3.4	3.16	3.10	3.5	0.008	0.92	0.0	0.06	11.35	0.00	2.273	8.06	0.00	5.4	94.6	0.0	-4.31	0.30	0.81	4.89	3.4	0.006	0.75	0.0	0.05	13.97	0.00	2.607	5.80	2.53	6.3	93.7	0.0	-3.25	0.57	0.33	0.85	4.75	3468	456	6	0	0	0	0	logfile
✔	8ZWJ	60529	2024-09-23	2024-06-13	3.1	2.80	2.17	3.2	0.006	0.74	0.0	0.05	15.84	0.00	2.218	14.51	0.00	10.1	89.9	0.0	-4.10	0.44	0.86	4.88	3.2	0.003	0.52	0.0	0.05	15.38	0.00	2.601	3.22	2.59	8.2	91.8	0.0	-2.28	1.29	0.42	0.86	4.51	2760	378	8	6	0	0	0	logfile
✔	8ZWM	60533	2024-09-23	2024-06-13	3.2	3.28	2.96	3.3	0.005	0.67	0.0	0.05	11.92	0.00	2.167	4.43	0.00	2.3	97.7	0.0	-3.69	0.35	0.90	6.45	3.3	0.004	0.58	0.0	0.05	14.40	0.00	2.606	3.43	1.02	2.5	97.5	0.0	-2.56	1.26	0.33	0.91	6.49	3435	453	6	0	0	0	0	logfile
✔	8ZWK	60530	2024-09-23	2024-06-13	3.4	2.76	2.79	3.4	0.003	0.60	0.0	0.05	16.32	0.00	2.253	13.62	0.00	8.2	91.8	0.0	-5.39	0.34	0.79	3.91	3.4	0.003	0.64	0.0	0.05	17.16	0.00	2.592	6.27	7.41	8.7	91.3	0.0	-3.78	1.51	0.37	0.82	4.05	2760	378	8	6	0	0	0	logfile

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