Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8V45	42965	2024-09-28	2023-11-28	3.63	4.32	3.75	3.9	0.005	0.75	0.0	0.05	12.90	0.01	2.257	4.34	5.65	2.3	97.7	0.0	-1.11	0.84	0.78	1.39	3.9	0.003	0.65	0.0	0.04	14.29	0.00	2.510	8.72	1.88	2.1	97.9	0.0	1.73	1.55	0.85	0.81	1.09	19813	2485	12	0	4	0	0	logfile
✔	8V49	42969	2024-09-26	2023-11-28	3.62	4.40	3.75	3.8	0.003	0.80	0.0	0.05	12.61	0.01	2.306	5.13	3.08	4.8	95.2	0.0	0.10	0.77	0.77	1.50	3.9	0.004	0.68	0.0	0.04	14.91	0.00	2.447	13.34	1.72	3.5	96.5	0.0	1.25	2.99	0.78	0.81	1.42	12834	1586	5	0	1	0	0	logfile
✔	8V3Z	42961	2024-09-29	2023-11-28	3.6	3.28	3.45	3.3	0.003	0.50	0.0	0.04	16.10	0.00	2.135	7.03	0.24	2.6	97.4	0.0	-0.02	0.70	0.83	2.51	3.2	0.004	0.59	0.0	0.04	17.30	0.00	2.463	5.23	2.58	3.7	96.3	0.0	-0.48	0.42	0.70	0.82	2.42	76422	9732	42	0	0	0	0	logfile
✔	8V3R	42951	2024-09-23	2023-11-28	3.4	3.53	3.28	3.5	0.012	1.58	0.0	0.09	12.46	0.01	1.385	1.56	0.24	2.2	97.8	0.0	-0.46	0.66	0.75	4.33	3.5	0.004	0.63	0.0	0.04	15.35	0.00	1.970	7.54	2.43	2.6	97.4	0.0	0.53	1.38	0.79	0.85	3.82	3953	503	4	0	5	0	0	logfile
✔	8V3T	42953	2024-09-29	2023-11-28	2.7	2.31	2.67	2.4	0.003	0.60	0.0	0.04	15.51	0.00	2.218	6.75	2.54	2.4	97.6	0.0	-0.10	0.60	0.78	2.56	2.3	0.004	0.70	0.0	0.05	17.72	0.00	2.422	5.72	5.31	4.5	95.5	0.0	-0.91	3.65	0.63	0.80	2.67	76362	9720	42	0	0	0	0	logfile
✔	8V40	42962	2024-09-29	2023-11-28	3.9	3.34	3.77	3.4	0.003	0.51	0.0	0.04	11.99	0.00	2.202	8.37	0.00	2.9	97.1	0.0	0.49	0.63	0.78	2.31	3.3	0.003	0.61	0.0	0.04	15.67	0.00	2.466	7.21	3.37	4.3	95.7	0.0	-0.82	1.28	0.63	0.78	2.09	76422	9732	42	0	0	0	0	logfile
✔	8V47	42967	2024-09-28	2023-11-28	4.08	4.63	4.12	4.1	0.006	0.79	0.0	0.05	12.06	0.01	2.275	5.49	2.85	2.3	97.7	0.0	-0.21	0.83	0.77	—	4.1	0.003	0.58	0.0	0.04	11.93	0.00	2.343	11.15	0.04	2.8	97.2	0.0	1.30	1.58	0.84	0.81	—	20580	2548	11	0	4	0	0	logfile
✔	8V3L	42949	2024-09-25	2023-11-28	4.3	3.45	4.78	4.3	0.003	0.63	0.0	0.04	12.02	0.00	2.209	12.35	0.00	2.7	97.2	0.1	1.47	0.25	0.63	—	3.0	0.003	0.65	0.0	0.04	13.22	0.00	2.389	10.54	0.16	3.1	96.7	0.1	1.08	1.58	0.25	0.65	—	11282	1359	2	0	0	0	0	logfile
✔	8X85	38136	2024-09-27	2023-11-27	3.58	2.69	3.57	2.2	0.004	0.78	0.0	0.05	13.70	0.01	2.110	12.72	0.18	6.6	93.1	0.3	-1.14	0.70	0.69	1.67	2.1	0.004	0.81	0.0	0.05	14.86	0.00	2.439	11.75	2.47	6.5	93.3	0.3	-0.97	0.51	0.68	0.66	1.62	14490	1782	8	0	17	0	0	logfile
✔	8X84	38135	2024-09-30	2023-11-27	3.1	2.99	3.18	3.2	0.004	0.53	0.0	0.03	14.45	0.00	1.976	4.19	0.30	0.8	99.2	0.0	3.21	0.57	0.78	3.16	3.2	0.002	0.44	0.0	0.03	15.25	0.00	2.485	3.62	0.91	1.1	98.9	0.0	3.63	0.47	0.59	0.80	2.83	24534	1524	12	0	6	4	12444	logfile
✔	8X80	38131	2024-09-29	2023-11-27	3.88	2.96	3.92	2.0	0.003	0.72	0.0	0.05	18.70	0.00	2.093	15.51	0.72	4.1	95.7	0.1	-0.19	0.68	0.62	0.95	2.0	0.004	0.76	0.0	0.05	18.17	0.00	2.463	16.03	5.14	4.8	95.0	0.2	-0.37	0.41	0.68	0.63	0.98	21890	2694	12	0	25	0	0	logfile
✔	8X8M	38149	2024-09-28	2023-11-27	2.37	2.78	2.36	2.7	0.002	0.49	0.0	0.04	14.22	0.00	2.178	2.38	1.48	4.1	95.9	0.0	-0.91	0.77	0.90	5.32	2.7	0.003	0.53	0.0	0.05	14.39	0.00	2.475	1.78	1.74	5.0	95.0	0.0	-0.88	0.21	0.83	0.93	5.52	17682	2325	3	0	0	0	0	logfile
✔	8X83	38134	2024-09-30	2023-11-27	2.8	2.86	2.94	3.0	0.005	0.60	0.0	0.03	14.83	0.00	1.974	4.85	1.22	1.3	98.7	0.0	2.34	0.59	0.79	2.50	3.0	0.002	0.43	0.0	0.03	15.74	0.00	2.510	3.95	0.61	1.3	98.7	0.0	3.82	0.52	0.58	0.79	2.79	24482	1520	12	0	6	4	12424	logfile
✔	8X81	38132	2024-09-29	2023-11-27	3.77	2.86	3.79	2.0	0.004	0.72	0.0	0.05	16.02	0.01	2.171	9.91	0.40	3.8	96.0	0.2	-0.29	0.69	0.67	0.67	2.0	0.004	0.72	0.0	0.05	15.85	0.00	2.433	11.45	4.14	4.9	95.0	0.1	-0.25	0.43	0.70	0.69	1.12	21875	2694	10	0	22	0	0	logfile
✔	8X8L	38148	2024-09-27	2023-11-27	2.7	2.58	2.91	2.9	0.004	0.60	1.0	0.05	9.65	0.00	2.091	5.91	1.89	2.6	97.4	0.0	2.09	0.57	0.76	3.42	2.8	0.003	0.57	0.0	0.04	15.75	0.00	2.222	5.40	1.58	3.9	96.1	0.0	1.47	1.15	0.59	0.84	3.78	17555	1140	6	0	0	0	8704	logfile
✔	8V3D	42946	2024-09-30	2023-11-27	2.95	3.20	3.00	3.2	0.003	0.51	0.0	0.04	17.45	0.00	1.999	6.13	2.59	3.0	97.0	0.0	2.24	0.63	0.82	3.08	3.2	0.004	0.58	0.0	0.04	17.59	0.00	2.363	4.68	3.17	2.6	97.4	0.0	2.49	0.29	0.63	0.82	2.82	25637	1578	5	0	1	0	13001	logfile
✔	8X82	38133	2024-09-26	2023-11-27	2.8	2.70	2.78	2.9	0.002	0.41	0.0	0.03	16.43	0.00	2.181	5.24	0.84	0.8	99.2	0.0	3.68	0.57	0.78	2.85	2.9	0.002	0.42	0.0	0.03	17.26	0.00	2.635	3.77	1.99	1.6	98.4	0.0	3.67	0.39	0.59	0.80	2.45	12004	1520	4	0	0	0	0	logfile
✔	8X8o	38151	2024-09-28	2023-11-27	2.5	2.87	2.48	2.7	0.005	0.55	0.0	0.05	14.74	0.00	2.200	2.38	1.64	5.6	94.4	0.0	-1.15	0.82	0.93	5.71	2.7	0.004	0.55	0.0	0.05	14.79	0.00	2.482	1.58	1.53	6.0	94.0	0.0	-0.99	0.18	0.82	0.94	5.65	17682	2325	3	0	0	0	0	logfile
✔	8V30	42939	2024-09-27	2023-11-25	2.54	3.42	2.59	3.1	0.008	0.94	10.0	0.05	14.97	0.01	1.900	3.02	0.51	3.3	96.7	0.0	-1.20	0.74	0.87	3.73	3.0	0.003	0.63	0.0	0.05	14.16	0.00	1.987	4.10	0.57	3.6	96.4	0.0	1.62	0.28	0.75	0.89	3.54	14910	1890	20	0	15	0	0	logfile
✔	8V2Z	42938	2024-09-27	2023-11-25	2.72	3.50	2.78	3.2	0.005	0.78	0.0	0.05	15.42	0.01	2.186	3.79	0.51	3.1	96.9	0.0	-1.04	0.75	0.88	3.25	3.2	0.002	0.59	0.0	0.04	14.83	0.00	2.120	3.58	1.21	2.9	97.1	0.0	1.91	1.54	0.75	0.88	2.55	14635	1860	10	0	10	0	0	logfile

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