Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UDL	42150	2024-09-27	2023-09-28	2.37	1.99	2.45	1.7	0.003	0.74	0.0	0.05	15.49	0.01	2.257	2.17	0.39	3.8	96.1	0.1	-0.77	0.66	0.76	3.31	1.7	0.005	0.83	0.0	0.05	19.10	0.01	2.259	6.42	3.29	4.5	95.5	0.0	-0.04	2.69	0.67	0.78	2.46	15245	1783	5	46	0	0	0	logfile
✔	8UD5	42147	2024-09-28	2023-09-28	3.13	3.33	3.15	3.3	0.002	0.49	0.0	0.05	18.01	0.00	2.238	7.88	0.27	1.2	98.8	0.0	0.54	0.71	0.81	3.80	3.3	0.003	0.53	0.0	0.04	17.76	0.00	2.459	5.64	2.10	2.3	97.7	0.0	0.39	0.98	0.71	0.83	3.80	17664	2076	8	54	0	0	0	logfile
✔	8UD9	42148	2024-09-24	2023-09-28	2.04	2.16	2.10	2.1	0.004	0.56	0.0	0.04	16.94	0.00	2.235	2.23	0.15	1.7	98.3	0.0	1.27	0.81	0.90	6.09	2.1	0.006	0.70	0.0	0.05	17.37	0.01	2.395	4.07	1.35	1.6	98.4	0.0	1.43	0.39	0.82	0.91	5.98	49955	6264	58	0	2	1120	0	logfile
✔	8UD4	42146	2024-09-27	2023-09-28	3.25	3.46	3.27	3.5	0.003	0.56	0.0	0.05	17.65	0.00	2.204	7.62	0.43	1.6	98.4	0.0	0.49	0.69	0.80	3.51	3.5	0.003	0.54	0.0	0.04	17.50	0.00	2.522	5.48	1.61	2.0	98.0	0.0	0.57	0.99	0.73	0.82	3.38	17498	2076	8	46	0	0	0	logfile
✔	8QoE	18535	2024-09-28	2023-09-28	3.16	3.80	3.17	3.5	0.019	2.44	121.0	0.22	14.31	0.01	1.749	4.38	0.84	3.4	96.6	0.0	-2.30	0.75	0.78	2.78	3.6	0.002	0.53	0.0	0.04	15.49	0.00	2.469	2.30	0.42	2.9	97.1	0.0	1.50	0.69	0.73	0.80	1.75	17816	1136	2	0	0	0	9072	logfile
✔	8UD3	42145	2024-09-27	2023-09-28	2.67	2.87	2.73	2.9	0.003	0.53	0.0	0.05	18.22	0.00	2.217	7.41	0.65	1.4	98.6	0.0	0.47	0.67	0.79	4.45	2.8	0.002	0.52	0.0	0.04	17.80	0.00	2.531	5.89	1.08	1.8	98.2	0.0	0.78	1.34	0.69	0.84	3.87	17244	2076	8	34	0	0	0	logfile
✔	8UDG	42149	2024-09-28	2023-09-28	4.98	6.27	5.10	5.0	0.004	0.65	0.0	0.04	11.43	0.00	2.089	3.07	0.00	2.8	97.1	0.2	-0.18	0.86	0.74	—	5.0	0.003	0.55	0.0	0.04	12.02	0.00	2.224	7.94	0.00	4.6	95.3	0.2	0.19	1.04	0.87	0.76	—	19524	1317	7	0	0	0	9627	logfile
✔	8UD2	42144	2024-09-27	2023-09-28	2.33	2.43	2.34	2.5	0.003	0.53	0.0	0.05	16.45	0.00	2.293	6.23	1.08	1.5	98.5	0.0	0.47	0.70	0.83	4.28	2.5	0.003	0.53	0.0	0.05	16.76	0.00	2.605	4.60	1.08	1.4	98.6	0.0	0.55	0.96	0.73	0.85	4.40	16530	2076	6	0	0	0	0	logfile
✔	8UCS	42139	2024-09-26	2023-09-27	2.4	2.51	2.38	2.5	0.003	0.49	0.0	0.04	18.16	0.00	2.235	8.78	0.36	3.0	97.0	0.0	0.55	0.66	0.81	2.59	2.5	0.003	0.55	0.0	0.04	18.42	0.00	2.516	8.39	2.77	3.7	96.3	0.0	2.33	0.76	0.68	0.85	2.18	12605	1632	12	0	0	2	0	logfile
✔	8UCD	42124	2024-09-24	2023-09-26	3.0	3.31	2.98	3.3	0.007	0.86	0.0	0.04	17.94	0.00	2.171	4.36	0.12	4.4	95.6	0.0	0.96	0.64	0.82	2.47	3.3	0.003	0.60	0.0	0.04	17.12	0.00	2.528	3.20	1.09	4.9	95.1	0.0	1.96	0.91	0.60	0.82	2.22	8058	939	8	0	9	1	0	logfile
✔	8WJH	37580	2024-09-23	2023-09-26	3.1	3.36	3.14	3.5	0.006	1.27	1.0	0.07	15.61	0.01	2.256	5.20	1.00	2.8	97.2	0.0	0.63	0.46	0.72	1.31	3.5	0.003	0.61	0.0	0.04	16.43	0.00	2.638	6.62	1.75	1.8	98.2	0.0	2.01	0.47	0.39	0.67	1.24	3824	505	2	0	1	0	0	logfile
✔	8WK0	37592	2024-09-25	2023-09-26	3.34	3.64	3.55	3.7	0.008	0.66	0.0	0.05	14.37	0.00	1.796	10.43	0.00	8.8	91.2	0.0	-1.53	0.68	0.76	2.13	3.7	0.002	0.53	0.0	0.04	15.55	0.00	1.833	6.17	0.62	5.6	94.4	0.0	-1.23	0.36	0.65	0.75	1.74	53711	3486	11	0	10	0	26743	logfile
✔	8WJQ	37589	2024-09-23	2023-09-26	3.8	4.16	3.84	4.3	0.010	1.47	1.0	0.07	15.62	0.02	2.216	9.81	0.48	3.6	96.4	0.0	0.80	0.41	0.60	0.46	4.3	0.003	0.75	0.0	0.04	17.46	0.00	2.488	8.45	3.38	3.0	97.0	0.0	1.78	1.20	0.42	0.62	0.17	3999	530	2	0	1	0	0	logfile
✔	8UC1	42112	2024-09-25	2023-09-25	3.4	3.74	3.42	3.8	0.005	0.72	0.0	0.05	14.10	0.01	2.220	15.14	0.71	4.2	95.8	0.0	1.30	0.66	0.76	2.67	3.8	0.003	0.57	0.0	0.04	15.01	0.00	2.584	8.55	2.56	3.6	96.2	0.2	1.88	0.39	0.59	0.79	2.22	10310	1336	4	0	2	0	0	logfile
✔	8WJG	37579	2024-09-23	2023-09-25	3.0	3.18	2.87	3.3	0.005	1.21	0.0	0.06	15.28	0.01	2.211	6.71	2.03	2.6	97.4	0.0	0.84	0.51	0.73	1.85	3.3	0.003	0.70	0.0	0.04	16.31	0.00	2.591	9.11	2.03	2.1	97.9	0.0	1.85	0.44	0.50	0.74	2.39	3952	533	1	0	0	0	0	logfile
✔	8UC3	42114	2024-09-23	2023-09-25	2.78	3.15	2.78	3.1	0.005	0.85	0.0	0.05	16.43	0.01	2.115	12.15	1.78	4.0	96.0	0.0	0.37	0.52	0.72	1.94	3.1	0.003	0.63	0.0	0.04	16.98	0.01	2.621	6.25	2.67	2.2	97.8	0.0	1.59	1.03	0.51	0.74	1.60	4304	556	6	0	2	0	0	logfile
✔	8QN7	18509	2024-09-23	2023-09-25	2.7	2.38	2.18	2.7	0.010	1.43	0.0	0.09	13.54	0.01	2.570	5.31	3.45	8.3	91.7	0.0	-3.22	0.45	0.93	6.45	2.6	0.003	0.50	0.0	0.05	18.21	0.00	2.686	2.48	0.69	6.7	93.3	0.0	-3.35	1.19	0.43	0.92	6.22	1455	190	5	0	0	0	0	logfile
✔	8UC0	42111	2024-09-24	2023-09-25	2.42	2.96	2.44	2.8	0.002	0.47	0.0	0.03	13.63	0.00	2.018	5.07	0.84	1.2	98.8	0.0	3.55	0.71	0.89	3.69	2.8	0.003	0.52	0.0	0.03	13.78	0.00	2.451	1.88	1.12	2.6	97.4	0.0	3.48	0.91	0.63	0.88	3.66	6861	422	2	0	3	102	3375	logfile
✔	8UBZ	42110	2024-09-24	2023-09-25	3.02	3.57	3.02	3.5	0.002	0.48	0.0	0.03	15.41	0.01	2.043	4.55	0.28	1.5	98.5	0.0	3.77	0.64	0.82	2.95	3.5	0.003	0.52	0.0	0.03	15.18	0.00	2.502	7.34	1.71	2.7	97.3	0.0	3.36	0.77	0.60	0.83	2.08	6674	415	2	0	4	26	3315	logfile
✔	8UBY	42109	2024-09-24	2023-09-25	2.67	3.13	2.68	3.0	0.002	0.47	0.0	0.03	14.53	0.01	2.118	4.08	0.56	1.7	98.3	0.0	3.72	0.67	0.88	4.26	3.0	0.003	0.49	0.0	0.03	14.83	0.00	2.573	3.64	1.13	1.9	98.1	0.0	3.96	0.89	0.60	0.86	3.25	6756	419	2	0	4	46	3345	logfile

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