Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WCQ	37446	2024-09-26	2023-09-13	3.35	3.66	3.31	3.6	0.003	0.52	0.0	0.04	22.28	0.01	2.278	5.98	0.00	2.6	97.4	0.0	0.24	0.66	0.67	1.42	3.5	0.003	0.59	0.0	0.04	18.65	0.01	2.454	4.08	0.93	2.5	97.5	0.0	0.78	0.54	0.78	0.87	1.78	14130	1560	10	0	45	0	0	logfile
✔	8U65	41944	2024-09-24	2023-09-13	3.01	2.26	3.04	1.9	0.002	0.58	0.0	0.04	18.68	0.00	2.164	12.11	0.36	4.8	95.2	0.0	-0.65	0.71	0.67	1.30	1.5	0.005	1.08	2.0	0.05	18.99	0.01	1.988	14.94	4.59	5.2	94.8	0.0	-1.03	0.74	0.72	0.68	1.50	7636	967	4	0	2	0	0	logfile
✔	8U62	41941	2024-09-24	2023-09-13	3.3	2.42	3.25	2.1	0.003	0.61	0.0	0.04	18.21	0.00	2.175	8.41	0.59	2.8	97.2	0.0	0.96	0.73	0.77	2.12	2.1	0.004	0.60	0.0	0.04	18.66	0.00	2.462	8.35	4.11	3.3	96.7	0.0	1.51	0.73	0.73	0.77	2.14	7884	998	4	0	2	0	0	logfile
✔	8U5C	41916	2024-09-24	2023-09-12	2.68	3.51	2.70	3.3	0.010	1.58	4.0	0.09	13.02	0.01	2.595	1.30	0.62	3.0	97.0	0.0	-0.60	0.68	0.83	3.93	3.3	0.003	0.65	0.0	0.04	14.36	0.00	2.499	7.53	0.72	1.6	98.4	0.0	2.91	0.57	0.62	0.79	2.77	9032	1150	4	0	4	0	0	logfile
✔	8U56	41913	2024-09-24	2023-09-12	2.75	3.46	2.81	3.3	0.007	0.96	0.0	0.05	13.55	0.01	2.398	4.25	0.00	1.5	98.5	0.0	-0.73	0.78	0.80	3.21	3.3	0.005	0.85	0.0	0.05	15.84	0.00	2.337	13.43	2.65	1.1	98.9	0.0	2.32	2.41	0.75	0.81	2.23	8588	1082	4	0	4	0	0	logfile
✔	8U5H	41922	2024-09-26	2023-09-12	3.23	3.43	—	3.4	0.005	0.71	0.0	0.06	30.15	0.00	2.200	13.39	0.85	4.6	95.4	0.0	0.94	0.72	0.83	0.90	3.4	0.007	0.71	0.0	0.04	30.20	0.00	2.127	12.64	3.54	5.0	95.0	0.0	1.20	0.39	0.71	0.84	1.12	13436	903	13	314	0	0	0	logfile
✔	8U58	41914	2024-09-24	2023-09-12	2.45	3.14	2.64	2.9	0.007	1.06	0.0	0.05	11.80	0.01	2.518	2.26	0.00	2.0	98.0	0.0	-0.71	0.66	0.71	0.94	3.0	0.004	0.68	0.0	0.04	14.54	0.00	2.399	11.28	1.42	1.1	98.9	0.0	2.76	1.00	0.68	0.81	2.56	8884	1130	4	0	2	0	0	logfile
✔	8U53	41911	2024-09-25	2023-09-12	2.6	2.33	2.54	2.9	0.024	1.71	0.0	0.10	15.25	0.01	2.498	0.88	0.00	1.1	98.9	0.0	0.71	0.78	0.81	4.12	2.9	0.003	0.58	0.0	0.04	16.95	0.00	2.513	6.39	1.40	2.3	97.7	0.0	2.04	0.64	0.75	0.82	2.16	9562	1074	6	0	98	0	0	logfile
✔	8U54	41912	2024-09-25	2023-09-12	2.65	3.71	2.66	3.5	0.006	0.79	0.0	0.05	12.07	0.01	2.221	3.48	0.17	3.6	96.4	0.0	-1.34	0.61	0.67	0.86	3.5	0.003	0.90	0.0	0.05	15.61	0.00	2.491	14.43	1.61	2.4	97.6	0.0	2.06	1.60	0.63	0.80	1.61	10745	1359	4	0	2	0	0	logfile
✔	8U5N	41929	2024-09-23	2023-09-12	3.0	3.95	2.93	3.8	0.006	0.86	0.0	0.05	12.97	0.01	2.281	1.83	0.80	3.0	97.0	0.0	-0.95	0.55	0.67	0.23	3.8	0.004	1.01	0.0	0.05	16.48	0.00	2.421	15.43	2.40	2.8	97.2	0.0	0.97	4.60	0.55	0.76	1.20	4535	577	2	0	1	0	0	logfile
✔	8U5Q	41930	2024-09-24	2023-09-12	2.4	3.32	2.38	3.1	0.006	0.90	0.0	0.05	12.12	0.01	2.402	3.55	0.23	2.7	97.3	0.0	-1.44	0.64	0.81	3.07	3.1	0.004	0.77	0.0	0.04	14.86	0.00	2.232	9.96	1.96	0.9	99.1	0.0	2.09	1.75	0.56	0.78	2.58	7896	1004	4	0	2	0	0	logfile
✔	8WC9	37435	2024-09-24	2023-09-11	3.2	3.47	3.29	3.5	0.007	0.91	3.0	0.06	13.81	0.01	2.205	9.72	1.16	5.5	94.5	0.0	-0.70	0.65	0.83	3.84	3.5	0.002	0.56	0.0	0.04	15.53	0.00	2.528	4.10	1.51	3.2	96.8	0.0	0.26	0.44	0.62	0.83	2.74	8394	1107	6	0	1	0	0	logfile
✔	8Qi7	18436	2024-09-27	2023-09-11	2.9	3.13	2.98	3.2	0.004	0.65	0.0	0.04	9.14	0.00	2.275	2.18	0.79	6.3	93.4	0.2	-3.83	0.69	0.88	5.75	3.2	0.002	0.60	0.0	0.04	13.56	0.00	2.613	2.28	0.33	2.1	97.9	0.0	0.74	0.95	0.70	0.87	3.88	14609	1848	8	0	0	117	0	logfile
✔	8WCB	37437	2024-09-24	2023-09-11	3.1	3.38	3.17	3.4	0.019	1.20	4.0	0.07	12.91	0.01	2.246	9.90	1.09	3.2	96.8	0.0	-0.88	0.59	0.67	3.20	3.4	0.003	0.61	0.0	0.04	14.42	0.00	2.373	9.36	1.77	3.3	96.6	0.1	0.24	1.40	0.55	0.71	2.76	7784	1072	6	0	1	0	0	logfile
✔	8WC8	37434	2024-09-24	2023-09-11	2.9	3.26	2.95	3.2	0.013	0.85	5.0	0.06	12.53	0.01	2.252	9.20	0.26	2.5	97.5	0.0	1.02	0.66	0.81	3.77	3.2	0.007	0.69	0.0	0.05	15.59	0.01	2.438	9.07	3.26	3.5	96.5	0.0	0.60	0.90	0.59	0.82	3.36	8062	1101	6	0	1	0	0	logfile
✔	8WC7	37433	2024-09-24	2023-09-11	3.1	3.32	3.11	3.3	0.004	0.60	1.0	0.04	13.83	0.00	2.237	4.93	0.80	4.5	95.5	0.0	-0.58	0.67	0.83	3.30	3.3	0.002	0.54	0.0	0.04	15.64	0.00	2.414	2.89	1.03	4.1	95.9	0.0	0.22	0.93	0.71	0.86	2.89	8532	1122	6	0	1	0	0	logfile
✔	8U4X	41903	2024-09-24	2023-09-11	2.81	2.24	2.84	2.0	0.002	0.56	0.0	0.04	17.69	0.00	1.334	9.77	2.11	2.7	97.3	0.0	0.85	0.78	0.79	1.88	2.0	0.004	0.66	0.0	0.04	18.26	0.01	2.528	9.07	3.99	2.9	97.1	0.0	0.51	0.75	0.79	0.80	2.32	7873	999	4	0	2	0	0	logfile
✔	8U4R	41892	2024-09-23	2023-09-11	3.1	3.43	3.14	3.4	0.003	0.67	0.0	0.05	14.01	0.01	2.165	4.99	0.00	3.6	96.4	0.0	0.38	0.65	0.85	3.13	3.4	0.003	0.56	0.0	0.04	15.71	0.00	2.543	3.65	1.57	4.2	95.8	0.0	0.90	0.93	0.66	0.88	2.86	4107	513	4	0	1	0	0	logfile
✔	8WCA	37436	2024-09-24	2023-09-11	3.48	3.71	3.50	3.7	0.006	0.87	5.0	0.06	13.52	0.01	2.105	10.04	0.89	4.3	95.7	0.0	-0.41	0.66	0.74	1.96	3.7	0.003	0.60	0.0	0.04	15.25	0.00	2.427	5.50	2.29	2.9	97.1	0.0	0.65	0.40	0.69	0.79	1.57	8160	1110	6	0	1	0	0	logfile
✔	8U4P	41890	2024-09-24	2023-09-11	3.15	3.53	3.25	3.5	0.004	0.53	0.0	0.04	14.37	0.00	2.240	4.24	0.00	3.3	96.7	0.0	0.52	0.63	0.84	3.05	3.5	0.002	0.47	0.0	0.04	15.30	0.00	2.505	3.09	1.48	3.1	96.9	0.0	1.38	0.25	0.56	0.82	2.73	7006	892	5	0	2	0	0	logfile

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