Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Z8X	39850	2024-09-27	2024-04-22	3.06	3.36	3.12	3.3	0.003	0.61	0.0	0.04	14.96	0.01	2.148	12.31	0.00	4.9	95.1	0.0	-0.67	0.80	0.87	2.83	3.3	0.003	0.62	0.0	0.04	16.40	0.00	2.470	8.61	1.41	4.8	95.2	0.0	-0.03	1.34	0.81	0.90	2.80	14768	1730	6	35	1	0	0	logfile
✔	8Z99	39857	2024-09-30	2024-04-22	3.2	3.46	3.29	3.5	0.009	1.27	1.0	0.08	17.28	0.02	2.058	7.16	2.03	5.2	94.8	0.0	-2.48	0.71	0.81	2.51	3.5	0.005	0.77	1.0	0.04	17.63	0.00	1.919	11.00	3.37	4.4	95.6	0.0	-0.50	1.05	0.74	0.84	2.48	25517	3030	24	100	9	0	0	logfile
✔	8Z8J	39848	2024-09-27	2024-04-22	3.16	3.46	3.17	3.4	0.002	0.55	0.0	0.04	13.58	0.01	2.218	9.57	0.00	4.7	95.3	0.0	-0.26	0.79	0.87	2.49	3.4	0.002	0.58	0.0	0.04	15.32	0.00	2.337	8.07	1.20	4.7	95.3	0.0	0.31	0.38	0.81	0.89	2.31	13766	1665	5	15	0	0	0	logfile
✔	8Z85	39838	2024-09-25	2024-04-21	2.3	2.74	2.30	2.6	0.002	0.48	0.0	0.04	13.26	0.00	2.234	7.19	0.00	2.4	97.6	0.0	0.02	0.79	0.86	4.75	2.6	0.002	0.53	0.0	0.04	15.44	0.00	2.467	6.08	1.07	2.2	97.8	0.0	0.96	1.10	0.79	0.87	4.18	10467	1256	5	18	0	0	0	logfile
✔	8Z7N	39820	2024-09-27	2024-04-20	3.58	3.87	3.60	3.6	0.010	1.35	0.0	0.07	22.40	0.01	1.848	53.22	29.65	22.6	76.7	0.7	-5.94	0.61	0.50	0.67	3.6	0.004	0.96	0.0	0.05	18.54	0.01	2.452	20.66	4.49	14.0	86.0	0.0	-3.47	1.86	0.62	0.52	0.60	16641	2094	15	0	18	0	0	logfile
✔	9BH6	44534	2024-09-30	2024-04-19	3.3	2.41	3.32	3.3	0.003	0.61	0.0	0.04	12.64	0.01	2.304	1.35	0.00	0.5	99.4	0.1	-1.51	0.84	0.81	3.48	3.3	0.003	0.58	0.0	0.04	15.30	0.00	2.498	5.15	1.57	1.7	98.3	0.0	1.54	1.36	0.84	0.82	2.34	24388	3096	4	0	0	0	0	logfile
✔	9BH8	44536	2024-09-26	2024-04-19	3.6	3.61	3.50	3.5	0.003	0.64	0.0	0.04	15.49	0.01	2.310	1.53	0.15	0.7	99.3	0.0	-2.28	0.74	0.75	2.34	3.5	0.003	0.69	0.0	0.04	17.65	0.00	2.439	7.50	1.84	1.9	98.1	0.0	0.55	1.22	0.76	0.76	1.40	13051	1574	4	44	0	0	0	logfile
✔	9BH7	44535	2024-09-26	2024-04-19	3.5	3.43	3.54	3.6	0.003	0.64	0.0	0.04	12.66	0.01	2.370	1.58	0.00	0.7	99.2	0.1	-1.16	0.83	0.78	2.21	3.6	0.003	0.60	0.0	0.04	16.09	0.00	2.534	6.56	2.32	2.0	98.0	0.0	1.96	2.04	0.83	0.79	1.12	12166	1544	2	0	0	0	0	logfile
✔	9BH9	44537	2024-09-26	2024-04-19	3.5	3.53	3.42	3.5	0.003	0.68	0.0	0.05	15.03	0.01	2.362	1.75	0.07	0.6	99.4	0.0	-2.11	0.72	0.76	2.80	3.5	0.003	0.66	0.0	0.04	17.76	0.00	2.524	6.81	1.47	1.9	98.1	0.0	0.87	2.06	0.74	0.76	1.60	13155	1574	4	50	0	0	0	logfile
✔	9BHA	44538	2024-09-26	2024-04-19	3.5	3.62	3.42	3.6	0.003	0.65	0.0	0.04	15.47	0.01	2.343	1.70	0.00	0.5	99.4	0.1	-1.83	0.72	0.77	2.78	3.6	0.003	0.63	0.0	0.04	17.85	0.00	2.498	6.57	1.54	1.6	98.4	0.0	1.05	0.81	0.73	0.78	1.90	13264	1586	4	49	0	0	0	logfile
✔	8Z4J	39766	2024-09-28	2024-04-17	2.97	3.22	3.08	3.2	0.008	1.36	1.0	0.07	18.57	0.01	2.067	9.56	1.94	5.6	94.1	0.3	-2.99	0.73	0.81	2.53	3.2	0.006	0.74	0.0	0.05	18.96	0.00	2.086	10.77	3.12	4.2	95.6	0.2	-0.33	0.54	0.73	0.83	2.63	20655	2521	20	72	7	0	0	logfile
✔	8Z4L	39767	2024-09-29	2024-04-17	2.85	3.07	2.94	3.1	0.008	1.23	3.0	0.07	18.49	0.01	2.088	7.90	1.54	4.5	95.4	0.1	-2.71	0.70	0.80	2.73	3.1	0.003	0.64	0.0	0.04	19.01	0.00	2.136	9.91	2.86	2.6	97.4	0.0	0.05	1.72	0.70	0.83	3.00	22713	2683	23	89	9	0	0	logfile
✔	9BF6	44491	2024-09-28	2024-04-16	4.5	7.51	4.66	4.5	0.003	0.67	2.0	0.05	12.77	0.00	2.022	3.80	0.10	8.4	91.4	0.2	-1.57	0.83	0.78	—	4.5	0.003	0.69	0.0	0.05	12.86	0.00	2.320	11.07	0.00	8.9	91.0	0.1	-1.56	0.88	0.84	0.80	—	20330	2367	39	0	130	0	0	logfile
✔	9BF1	44486	2024-09-28	2024-04-16	3.1	2.28	3.13	3.8	0.003	0.48	0.0	0.04	14.85	0.00	2.174	7.67	0.00	5.3	94.7	0.0	0.71	0.47	0.28	0.12	2.0	0.003	0.57	0.0	0.04	17.08	0.00	2.483	9.41	1.90	4.5	95.5	0.0	0.67	1.45	0.72	0.73	2.05	18158	2244	2	0	0	0	0	logfile
✔	9BF5	44490	2024-09-28	2024-04-16	3.07	2.31	3.11	2.0	0.002	0.50	0.0	0.04	16.90	0.00	2.131	5.28	0.00	5.7	94.3	0.0	-0.15	0.77	0.76	1.93	2.0	0.002	0.52	0.0	0.04	17.62	0.00	2.505	3.10	2.14	5.8	94.2	0.0	0.31	0.31	0.77	0.77	1.68	19742	2380	4	26	0	0	0	logfile
✔	9BER	44482	2024-09-28	2024-04-16	4.1	4.97	4.17	4.1	0.005	0.83	1.0	0.06	16.15	0.01	1.899	5.81	0.24	7.4	92.5	0.1	-2.06	0.83	0.81	—	4.2	0.012	0.73	0.0	0.05	12.72	0.01	2.398	13.27	0.00	8.1	91.9	0.0	-1.66	0.81	0.84	0.85	—	20350	2416	36	0	100	0	0	logfile
✔	9BEi	44479	2024-09-24	2024-04-15	4.16	4.77	4.14	4.2	0.003	0.78	0.0	0.05	14.43	0.01	2.016	21.15	0.00	9.2	90.7	0.1	-1.93	0.85	0.73	—	4.2	0.004	0.77	0.0	0.05	14.62	0.01	2.461	21.84	0.00	9.3	90.6	0.1	-1.64	0.52	0.85	0.74	—	6649	862	5	0	0	0	0	logfile
✔	9BDD	44449	2024-09-26	2024-04-11	2.86	2.19	2.86	2.2	0.004	0.70	0.0	0.06	17.26	0.01	2.249	5.54	0.26	1.8	98.2	0.0	0.22	0.61	0.60	3.11	2.0	0.003	0.58	0.0	0.04	19.01	0.00	2.457	6.04	2.81	2.0	98.0	0.0	1.47	1.02	0.78	0.79	2.58	12313	1397	7	61	1	0	0	logfile
✔	8Z1E	39724	2024-09-24	2024-04-11	3.12	3.44	3.19	3.4	0.002	0.43	0.0	0.03	14.56	0.00	2.273	4.34	0.44	1.2	98.8	0.0	0.87	0.57	0.82	1.73	3.4	0.003	0.52	0.0	0.04	15.26	0.00	2.470	4.87	4.36	1.6	98.4	0.0	2.40	0.30	0.66	0.86	1.54	6516	834	3	0	0	0	0	logfile
✔	9BDC	44448	2024-09-26	2024-04-11	2.54	2.10	2.55	2.0	0.003	0.67	0.0	0.05	17.86	0.01	2.280	4.90	0.18	2.5	97.5	0.0	0.28	0.59	0.52	3.09	2.0	0.002	0.54	0.0	0.04	19.29	0.00	2.523	6.19	0.72	2.6	97.4	0.0	1.42	0.50	0.79	0.80	2.63	12026	1392	6	61	0	0	0	logfile

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