Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9S37	54527	2025-09-17	2025-07-23	3.94	4.35	3.56	3.9	0.006	1.43	12.0	0.08	16.80	0.01	2.330	3.00	2.12	4.5	95.4	0.1	-0.35	0.72	0.84	2.37	4.0	0.003	0.75	0.0	0.04	17.13	0.00	2.526	5.53	4.62	4.2	95.8	0.0	0.29	0.48	0.72	0.84	2.22	7364	959	3	0	0	0	0	logfile
✔	9RZF	54402	2025-09-17	2025-07-15	3.8	2.96	3.84	3.0	0.004	0.86	0.0	0.06	16.07	0.00	2.564	7.84	0.00	5.9	94.1	0.0	-2.48	0.32	0.67	4.40	3.0	0.004	0.66	0.0	0.05	18.34	0.00	2.566	7.84	6.06	6.8	93.2	0.0	-2.45	1.57	0.34	0.69	3.03	2538	366	6	0	0	0	0	logfile
✔	9VQL	65259	2025-09-18	2025-07-05	3.6	3.88	3.58	4.1	0.005	0.94	8.0	0.06	13.60	0.01	2.115	13.51	0.80	6.2	93.8	0.1	-0.95	0.53	0.33	0.57	3.9	0.003	0.78	0.0	0.04	15.73	0.00	2.557	10.36	1.99	5.3	94.7	0.0	-1.15	1.41	0.74	0.70	1.48	12122	1626	8	0	14	0	0	logfile
✔	9VQM	65260	2025-09-19	2025-07-05	3.5	3.96	3.74	3.9	0.003	0.75	15.0	0.05	14.73	0.00	2.116	11.28	0.37	4.2	95.8	0.0	-0.71	0.73	0.70	1.49	3.8	0.003	0.66	0.0	0.04	15.28	0.00	2.130	9.97	1.80	4.7	95.3	0.0	-0.61	1.31	0.73	0.71	1.55	24538	3162	11	0	21	0	0	logfile
✔	9RS6	54211	2025-09-17	2025-06-30	3.0	3.70	2.98	3.4	0.003	0.68	0.0	0.04	13.76	0.00	2.232	9.86	0.00	3.7	96.3	0.0	-0.81	0.81	0.82	2.79	3.4	0.003	0.67	0.0	0.04	15.45	0.00	2.585	11.01	1.46	3.5	96.5	0.0	-0.22	0.77	0.81	0.83	2.72	6972	891	2	0	0	0	0	logfile
✔	9RS7	54212	2025-09-17	2025-06-30	3.0	3.67	2.99	3.4	0.003	0.59	0.0	0.04	15.61	0.00	2.173	14.20	0.67	3.9	96.1	0.0	0.29	0.85	0.84	2.63	3.4	0.004	0.73	0.0	0.04	16.37	0.00	2.477	11.96	2.35	3.9	96.1	0.0	0.36	0.31	0.81	0.84	2.17	8250	1052	3	0	0	0	0	logfile
✔	9VKV	65144	2025-09-18	2025-06-24	2.09	2.22	2.14	2.3	0.007	0.68	0.0	0.05	15.24	0.00	2.219	2.44	1.61	4.2	95.8	0.0	0.52	0.72	0.91	7.43	2.3	0.003	0.51	0.0	0.04	15.08	0.00	2.558	2.29	1.55	2.8	97.2	0.0	0.70	0.86	0.71	0.91	7.21	18339	2385	30	0	0	1644	0	logfile
✔	9RP3	54139	2025-09-17	2025-06-23	2.1	3.06	2.15	2.7	0.003	0.66	0.0	0.04	15.01	0.01	2.465	8.45	0.72	1.3	98.7	0.0	1.56	0.79	0.82	4.11	2.7	0.004	0.58	0.0	0.04	15.72	0.00	2.543	9.16	1.16	1.5	98.5	0.0	1.49	3.27	0.78	0.81	3.69	6349	799	2	0	0	0	0	logfile
✔	9P6H	71309	2025-09-17	2025-06-19	2.75	3.35	2.79	3.2	0.007	1.01	0.0	0.06	23.35	0.02	2.215	11.68	0.32	4.6	95.3	0.1	-0.73	0.52	0.83	3.40	3.2	0.004	0.72	0.0	0.05	15.77	0.01	2.288	5.84	1.61	2.9	97.0	0.1	0.09	0.49	0.49	0.82	2.76	5963	701	7	0	21	0	0	logfile
✔	9ViC	65083	2025-09-17	2025-06-18	2.45	2.63	2.46	2.7	0.016	1.76	6.0	0.09	16.51	0.03	2.069	3.71	3.96	1.4	97.5	1.1	-2.50	0.60	0.78	3.63	2.7	0.003	0.63	0.0	0.04	17.37	0.01	2.594	4.83	2.86	0.7	98.9	0.4	3.84	1.12	0.70	0.83	2.89	4486	566	8	0	8	0	0	logfile
✔	9ViB	65082	2025-09-17	2025-06-18	2.26	2.38	2.26	2.4	0.015	1.80	2.0	0.09	17.07	0.03	2.360	3.14	5.29	1.8	97.8	0.4	-1.15	0.61	0.79	4.99	2.4	0.004	0.67	0.0	0.04	17.11	0.01	2.626	3.71	1.10	1.1	98.9	0.0	3.60	1.10	0.72	0.85	4.55	4486	566	8	0	8	0	0	logfile
✔	9ViE	65085	2025-09-17	2025-06-18	2.38	2.55	2.40	2.6	0.014	1.64	0.0	0.09	16.94	0.02	2.252	1.92	2.92	1.8	98.2	0.0	-1.60	0.59	0.77	4.92	2.6	0.004	0.59	0.0	0.04	18.22	0.00	2.628	4.59	1.67	0.4	99.6	0.0	3.27	0.45	0.65	0.79	3.60	4746	574	8	0	8	0	0	logfile
✔	9ViD	65084	2025-09-17	2025-06-18	2.22	2.36	2.21	2.4	0.013	1.54	2.0	0.10	16.08	0.02	2.386	1.71	0.00	1.8	98.2	0.0	-0.11	0.59	0.75	5.13	2.4	0.004	0.61	0.0	0.04	17.84	0.00	2.633	4.05	2.50	0.4	99.6	0.0	3.58	1.11	0.72	0.82	4.01	4746	574	8	0	8	0	0	logfile
✔	9P4Z	71290	2025-09-17	2025-06-17	2.83	2.98	2.83	3.0	0.004	0.62	0.0	0.05	16.92	0.00	2.034	4.27	0.00	1.7	98.3	0.0	1.11	0.48	0.83	2.09	3.0	0.004	0.59	0.0	0.04	15.74	0.00	2.165	9.45	3.81	1.7	98.3	0.0	1.91	0.94	0.48	0.84	1.66	3167	407	2	0	4	0	0	logfile
✔	9RiA	53991	2025-09-19	2025-06-11	3.2	3.63	—	3.3	0.002	0.52	0.0	0.04	15.12	0.00	2.542	4.10	0.96	1.5	98.5	0.0	-0.24	0.86	0.78	2.85	3.3	0.002	0.56	0.0	0.04	15.88	0.00	2.511	6.69	1.44	2.0	98.0	0.0	1.35	1.05	0.88	0.85	2.33	24721	3075	7	0	3	0	0	logfile
✔	9VEB	64996	2025-09-17	2025-06-09	3.56	3.90	3.61	3.9	0.003	0.53	0.0	0.04	14.49	0.00	2.255	4.37	0.23	1.1	98.9	0.0	0.91	0.48	0.72	2.18	3.9	0.003	0.52	0.0	0.04	15.42	0.00	2.544	4.55	2.91	1.6	98.4	0.0	1.45	0.81	0.64	0.81	2.17	8046	1086	2	0	0	0	0	logfile
✔	9VDC	64982	2025-09-18	2025-06-08	3.4	2.92	—	3.7	0.003	0.47	0.0	0.04	16.38	0.00	2.423	3.80	1.38	6.9	93.1	0.0	1.09	0.74	0.83	1.87	3.7	0.003	0.48	0.0	0.04	16.36	0.00	2.425	4.17	4.49	7.3	92.7	0.0	0.83	0.33	0.74	0.84	1.78	16540	1091	4	0	0	0	8443	logfile
✔	9P0A	71067	2025-09-17	2025-06-06	4.2	3.57	3.94	1.7	0.004	0.80	0.0	0.05	15.19	0.01	2.060	7.59	1.92	14.3	85.7	0.0	-3.71	0.68	0.73	—	1.4	0.005	0.86	0.0	0.05	13.02	0.00	2.518	12.48	0.00	15.9	84.1	0.0	-3.78	1.28	0.68	0.74	—	4035	564	3	0	0	0	0	logfile
✔	9oYS	71033	2025-09-17	2025-06-04	3.06	3.05	2.85	3.1	0.002	0.41	0.0	0.04	13.41	0.00	2.610	6.89	0.00	3.3	96.7	0.0	-2.71	0.37	0.83	4.99	3.1	0.006	0.61	0.0	0.05	13.46	0.00	2.658	8.52	8.33	6.1	93.9	0.0	-3.30	1.13	0.39	0.85	4.30	1218	192	6	0	0	0	0	logfile
✔	9oUW	70883	2025-09-17	2025-05-29	3.2	3.56	3.23	3.4	0.004	0.86	0.0	0.05	16.36	0.00	2.239	8.14	3.49	4.0	95.8	0.2	-1.66	0.74	0.81	2.39	3.4	0.003	0.63	0.0	0.04	16.60	0.00	2.410	8.46	5.23	4.8	95.1	0.1	-1.44	0.42	0.74	0.81	2.36	7706	956	8	0	0	0	0	logfile

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