Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9V7V	64825	2025-09-17	2025-05-28	3.6	4.07	3.60	4.1	0.002	0.48	0.0	0.04	12.36	0.00	2.567	6.59	2.88	6.5	93.5	0.0	-0.78	0.69	0.76	1.72	4.1	0.003	0.59	0.0	0.04	14.67	0.00	2.474	8.84	3.63	8.4	91.5	0.1	-0.72	1.12	0.69	0.76	1.37	8912	1196	8	0	4	0	0	logfile
✔	9oTS	70857	2025-09-18	2025-05-27	3.2	3.28	3.14	4.0	0.005	1.28	46.0	0.11	11.81	0.01	2.298	6.43	0.00	6.4	93.6	0.0	-2.32	0.52	0.73	1.97	4.0	0.003	0.61	0.0	0.04	16.06	0.00	2.373	4.83	3.27	4.9	95.1	0.0	-1.57	0.80	0.54	0.76	1.88	17238	2109	6	0	0	0	0	logfile
✔	9V5R	64793	2025-09-19	2025-05-26	2.92	2.44	2.99	2.1	0.003	0.83	0.0	0.04	16.97	0.00	2.403	10.42	1.90	2.7	97.3	0.0	0.39	0.77	0.73	1.29	2.2	0.004	0.86	0.0	0.05	17.27	0.00	2.448	11.92	4.04	4.1	95.9	0.0	0.40	0.50	0.76	0.74	1.06	23153	3059	3	0	0	0	0	logfile
✔	9oRE	70773	2025-09-19	2025-05-21	4.13	4.40	4.08	4.3	0.011	1.89	35.0	0.08	15.09	0.02	1.586	9.85	5.63	7.7	90.1	2.2	-1.00	0.83	0.77	—	4.3	0.004	0.65	0.0	0.04	12.61	0.00	2.275	7.33	0.08	8.5	91.1	0.4	-1.21	0.65	0.83	0.77	—	23776	1547	10	0	8	0	11842	logfile
✔	9oPV	70725	2025-09-17	2025-05-20	3.4	4.00	6.56	3.7	0.002	0.53	0.0	0.03	14.95	0.00	2.387	8.63	0.00	0.0	100.0	0.0	6.08	0.43	0.70	0.95	3.7	0.003	0.80	0.0	0.04	18.29	0.00	2.471	16.28	4.76	0.3	99.7	0.0	4.46	1.67	0.44	0.75	1.05	6145	780	10	0	0	0	0	logfile
✔	9V0U	64672	2025-09-17	2025-05-19	3.51	2.38	3.58	2.0	0.003	0.66	0.0	0.04	12.78	0.00	2.186	15.13	0.83	2.6	97.4	0.0	-0.35	0.75	0.73	1.92	2.1	0.003	0.66	0.0	0.04	16.07	0.00	2.529	11.85	5.32	2.8	97.2	0.0	0.55	0.50	0.75	0.72	2.03	6205	864	4	0	0	0	0	logfile
✔	9R95	53853	2025-09-18	2025-05-19	3.2	3.61	3.40	3.5	0.004	0.66	0.0	0.05	20.50	0.00	2.121	5.91	1.51	3.1	96.8	0.1	1.38	0.78	0.83	1.39	3.5	0.003	0.55	0.0	0.04	20.59	0.00	2.523	5.34	1.81	2.5	97.4	0.1	2.03	0.33	0.82	0.87	1.12	14520	1568	6	100	1	0	0	logfile
✔	9oPB	70687	2025-09-17	2025-05-17	3.6	3.67	4.75	3.4	0.002	0.44	0.0	0.03	15.83	0.00	2.483	6.92	0.16	0.0	100.0	0.0	6.54	0.35	0.56	0.42	3.5	0.004	0.80	0.0	0.04	18.30	0.01	2.403	20.11	3.65	0.0	100.0	0.0	4.22	3.56	0.37	0.65	0.60	6145	780	10	0	0	0	0	logfile
✔	9R6o	53679	2025-09-17	2025-05-13	4.1	5.11	4.08	4.4	0.003	0.58	0.0	0.04	13.19	0.00	2.478	9.81	0.00	7.0	93.0	0.0	-1.97	0.88	0.81	—	4.4	0.002	0.56	0.0	0.04	13.30	0.00	2.585	9.44	0.00	4.3	95.7	0.0	-1.31	0.33	0.87	0.80	—	4249	537	4	0	3	0	0	logfile
✔	9oMA	70610	2025-09-17	2025-05-13	4.14	3.78	—	2.0	0.005	0.73	0.0	0.04	14.12	0.01	2.293	7.98	2.01	5.5	94.1	0.4	-0.64	0.83	0.62	—	1.7	0.004	0.76	0.0	0.05	13.92	0.01	2.122	13.78	0.17	5.8	94.1	0.2	-0.72	1.38	0.83	0.64	—	10325	1270	5	0	0	0	0	logfile
✔	9oM6	70608	2025-09-19	2025-05-13	4.14	4.49	4.27	4.3	0.004	0.60	0.0	0.03	13.22	0.00	2.165	10.84	1.43	3.4	96.4	0.2	1.53	0.75	0.78	—	4.3	0.003	0.56	0.0	0.03	13.97	0.00	2.172	7.61	0.00	3.1	96.8	0.1	2.45	2.31	0.75	0.78	—	22393	1426	15	0	0	63	11063	logfile
✔	9UWD	64550	2025-09-17	2025-05-12	3.41	3.58	3.55	3.6	0.007	1.07	3.0	0.08	9.30	0.01	2.001	10.74	1.39	3.5	96.0	0.5	1.54	0.37	0.56	1.35	3.7	0.003	0.72	0.0	0.04	14.94	0.00	2.554	8.98	5.28	4.2	95.8	0.0	2.53	1.00	0.42	0.70	2.39	3355	428	1	0	0	0	0	logfile
✔	9oK3	70553	2025-09-18	2025-05-08	3.74	3.90	3.77	3.8	0.004	0.61	0.0	0.03	18.04	0.00	2.174	8.46	0.74	2.2	97.8	0.1	2.42	0.73	0.78	0.88	3.8	0.003	0.56	0.0	0.03	18.58	0.00	2.257	6.14	2.64	2.4	97.6	0.0	3.80	1.17	0.73	0.79	1.08	17739	1130	6	0	0	0	8786	logfile
✔	9UUU	64518	2025-09-18	2025-05-08	3.17	3.72	3.49	3.7	0.014	1.05	0.0	0.05	15.33	0.01	2.257	5.09	0.00	5.6	94.4	0.1	-3.13	0.61	0.83	2.36	3.7	0.008	0.73	0.0	0.05	16.12	0.01	2.438	7.10	1.49	6.5	93.5	0.0	-0.58	0.36	0.65	0.86	1.83	14694	1892	10	0	8	0	0	logfile
✔	9oi8	70510	2025-09-17	2025-05-06	2.81	3.70	2.72	3.3	0.004	0.87	0.0	0.05	15.71	0.01	2.382	11.09	4.74	7.6	92.4	0.0	-1.82	0.78	0.71	1.59	3.3	0.003	0.76	0.0	0.04	16.26	0.00	2.524	7.17	4.21	2.3	97.7	0.0	0.89	1.12	0.77	0.71	1.49	7719	1027	5	0	1	0	0	logfile
✔	9UTA	64486	2025-09-17	2025-05-03	3.77	4.38	3.89	4.2	0.006	0.83	0.0	0.04	16.78	0.01	2.186	11.71	0.19	9.2	90.8	0.0	-1.45	0.65	0.70	0.52	4.3	0.005	1.27	1.0	0.04	17.52	0.01	2.098	9.28	3.85	4.5	95.5	0.0	1.09	1.27	0.64	0.73	0.39	4701	602	2	0	0	0	0	logfile
✔	9UT9	64485	2025-09-17	2025-05-03	3.18	3.90	3.31	3.7	0.004	0.60	0.0	0.04	16.57	0.00	2.192	4.71	0.23	7.4	92.5	0.1	-1.60	0.86	0.85	2.96	3.7	0.003	0.57	0.0	0.04	16.55	0.00	2.543	2.68	1.14	3.9	96.0	0.1	0.19	0.68	0.83	0.85	2.05	7958	1004	2	0	0	0	0	logfile
✔	9UT8	64484	2025-09-18	2025-05-03	3.41	2.28	3.49	2.0	0.003	0.61	0.0	0.04	16.77	0.01	2.029	5.99	0.15	5.1	94.9	0.1	-0.85	0.74	0.72	1.92	2.0	0.003	0.63	0.0	0.04	17.36	0.00	2.384	4.52	3.56	4.9	95.1	0.0	-0.09	0.46	0.74	0.73	1.72	12214	1552	2	0	0	0	0	logfile
✔	9UTB	64487	2025-09-18	2025-05-03	3.59	4.25	3.68	3.9	0.003	0.64	0.0	0.04	16.65	0.01	2.074	15.99	0.15	7.6	92.3	0.1	-1.11	0.73	0.69	1.17	4.0	0.003	0.82	0.0	0.05	17.68	0.00	2.422	14.54	4.37	4.9	94.9	0.2	-0.25	0.96	0.75	0.74	0.82	12471	1584	3	0	2	0	0	logfile
✔	9UTC	64488	2025-09-17	2025-05-03	3.33	2.50	3.52	2.1	0.005	0.69	0.0	0.04	17.20	0.01	1.710	14.04	0.33	9.4	90.6	0.0	-1.85	0.73	0.72	1.86	2.1	0.004	0.70	0.0	0.04	17.77	0.01	2.462	11.23	4.68	6.8	93.2	0.0	-1.17	0.38	0.74	0.73	1.81	8143	1026	3	0	2	0	0	logfile

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