Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9LYC	63523	2025-09-17	2025-02-19	3.06	2.38	3.19	2.1	0.004	0.68	0.0	0.04	15.52	0.01	2.034	12.59	0.75	3.8	96.2	0.0	0.99	0.73	0.74	1.64	2.1	0.004	0.70	0.0	0.04	16.95	0.00	2.495	9.80	3.28	4.3	95.7	0.0	1.00	0.67	0.76	0.78	1.84	10056	1312	6	0	0	0	0	logfile
✔	9LYD	63522	2025-09-17	2025-02-19	3.66	2.79	3.59	2.8	0.004	0.81	0.0	0.04	16.60	0.01	2.188	12.83	0.17	4.0	96.0	0.0	1.24	0.72	0.74	0.54	2.8	0.003	0.79	0.0	0.04	17.29	0.00	2.526	10.57	3.63	4.6	95.2	0.1	1.41	0.41	0.72	0.73	0.46	5636	746	2	0	0	0	0	logfile
✔	9NE8	49301	2025-09-18	2025-02-19	3.6	3.85	3.72	4.0	0.005	0.92	0.0	0.06	17.12	0.01	2.484	8.88	0.18	3.8	96.2	0.0	-1.96	0.70	0.64	0.74	3.9	0.003	0.77	0.0	0.04	18.79	0.00	2.462	14.29	2.60	3.1	96.9	0.0	-0.99	0.49	0.71	0.67	0.54	16242	1921	7	46	1	0	0	logfile
✔	9NE6	49299	2025-09-18	2025-02-19	3.11	3.37	3.20	3.4	0.004	0.89	0.0	0.06	17.44	0.01	2.433	6.19	0.00	3.5	96.5	0.0	-1.18	0.64	0.66	2.08	3.4	0.003	0.67	0.0	0.04	19.05	0.00	2.381	10.76	1.89	3.2	96.8	0.0	-0.20	0.96	0.69	0.75	1.49	16349	1923	7	51	1	0	0	logfile
✔	9LX5	63466	2025-09-17	2025-02-17	3.6	3.83	3.56	3.8	0.004	0.59	0.0	0.05	17.83	0.00	2.230	7.61	4.22	11.4	88.6	0.0	-1.51	0.66	0.80	1.94	3.8	0.004	0.64	0.0	0.05	18.04	0.00	2.212	7.20	6.94	11.7	88.3	0.0	-1.77	0.27	0.66	0.80	2.21	7519	981	6	0	6	0	0	logfile
✔	9LWU	63459	2025-09-18	2025-02-17	3.5	3.70	3.50	3.8	0.006	1.10	0.0	0.06	19.56	0.01	2.176	9.77	1.93	4.3	95.1	0.6	-2.83	0.56	0.64	0.92	3.7	0.004	0.87	0.0	0.05	18.28	0.00	2.462	10.54	4.16	3.7	96.1	0.2	0.38	1.40	0.59	0.67	1.07	14120	1820	12	0	20	0	0	logfile
✔	9LWP	63455	2025-09-17	2025-02-16	2.93	3.16	2.99	3.2	0.002	0.50	0.0	0.04	14.80	0.00	2.104	8.20	0.95	3.2	96.6	0.2	0.93	0.54	0.73	2.99	3.2	0.003	0.53	0.0	0.04	16.04	0.00	2.574	7.32	3.79	3.5	96.4	0.1	1.02	0.33	0.55	0.74	2.81	6844	876	4	0	0	0	0	logfile
✔	9iBX	52815	2025-09-18	2025-02-14	2.54	3.36	2.59	3.2	0.004	0.59	0.0	0.04	13.66	0.00	2.084	6.21	0.55	2.1	97.9	0.0	0.39	0.66	0.75	3.41	3.2	0.005	0.61	0.0	0.04	16.31	0.00	2.258	6.36	2.22	2.2	97.8	0.0	0.92	1.27	0.64	0.72	2.83	14129	1661	6	38	2	0	0	logfile
✔	9iC3	52828	2025-09-18	2025-02-14	2.96	3.09	—	3.4	0.003	0.56	0.0	0.04	13.62	0.00	2.200	9.22	0.85	3.2	96.8	0.0	0.31	0.79	0.71	2.09	3.4	0.004	0.65	0.0	0.04	16.64	0.00	2.258	9.92	1.91	3.3	96.7	0.0	0.72	0.60	0.79	0.75	1.83	13841	1627	6	41	4	0	0	logfile
✔	9iC0	52823	2025-09-18	2025-02-14	3.24	3.57	—	3.7	0.005	0.56	0.0	0.04	13.45	0.00	2.287	8.00	0.56	3.0	97.0	0.0	0.36	0.82	0.76	2.17	3.8	0.003	0.61	0.0	0.04	16.21	0.00	2.272	8.73	1.62	2.6	97.4	0.0	0.71	0.97	0.81	0.78	1.34	13987	1636	6	41	3	0	0	logfile
✔	9iC1	52824	2025-09-18	2025-02-14	2.73	3.54	2.82	3.4	0.003	0.56	0.0	0.04	12.84	0.00	2.160	5.86	0.62	1.9	98.1	0.0	1.02	0.73	0.77	2.61	3.4	0.003	0.61	0.0	0.04	16.17	0.01	2.291	7.65	1.79	1.8	98.2	0.0	0.64	1.93	0.67	0.73	1.43	14182	1682	6	38	2	0	0	logfile
✔	9iBZ	52819	2025-09-18	2025-02-14	3.08	3.31	—	3.6	0.003	0.50	0.0	0.04	12.86	0.00	2.216	6.59	0.68	2.3	97.7	0.0	0.44	0.77	0.78	2.69	3.6	0.003	0.57	0.0	0.04	15.92	0.00	2.345	7.19	1.71	2.3	97.7	0.0	0.91	1.31	0.77	0.78	2.48	14339	1680	6	41	3	0	0	logfile
✔	9LWA	63436	2025-09-19	2025-02-13	3.83	3.58	3.67	3.5	0.009	0.57	0.0	0.04	13.21	0.00	1.070	22.74	0.00	1.4	98.6	0.0	0.09	0.73	0.85	2.74	3.5	0.004	0.80	2.0	0.04	16.26	0.00	2.073	6.79	1.93	2.3	97.7	0.0	-0.30	1.50	0.74	0.86	2.58	24072	3126	18	0	0	0	0	logfile
✔	9NB5	49213	2025-09-18	2025-02-13	3.0	2.51	—	3.1	0.003	0.54	0.0	0.04	16.23	0.00	2.210	5.61	3.25	2.9	97.1	0.0	-0.95	0.84	0.84	2.17	3.1	0.003	0.59	0.0	0.04	16.99	0.00	2.248	4.39	4.16	3.1	96.8	0.0	-1.05	0.32	0.84	0.85	2.10	19608	2573	6	0	29	0	0	logfile
✔	9NB8	49221	2025-09-19	2025-02-13	4.0	3.99	—	4.0	0.004	0.65	0.0	0.04	15.49	0.00	2.101	17.12	2.02	4.7	95.2	0.1	-0.65	0.84	0.78	—	4.0	0.005	0.70	0.0	0.04	16.68	0.00	2.182	14.52	3.92	6.1	93.9	0.0	-0.87	0.42	0.84	0.79	—	22171	2904	11	0	25	0	0	logfile
✔	9NB6	49218	2025-09-19	2025-02-13	3.3	3.00	—	3.4	0.003	0.55	0.0	0.04	17.73	0.00	2.241	8.91	3.64	2.8	97.2	0.0	-0.36	0.82	0.80	1.40	3.4	0.004	0.61	0.0	0.04	17.94	0.00	2.228	7.47	6.30	3.4	96.6	0.0	-0.57	0.30	0.83	0.81	1.08	24003	3122	12	0	36	0	0	logfile
✔	9LVA	63417	2025-09-17	2025-02-12	3.52	3.59	3.62	3.6	0.003	0.53	0.0	0.04	16.84	0.00	2.369	8.31	2.34	3.4	96.6	0.0	2.10	0.42	0.58	0.54	3.6	0.003	0.62	0.0	0.04	17.36	0.00	2.574	8.61	4.97	3.2	96.8	0.0	1.78	0.41	0.44	0.60	0.49	3323	415	2	0	1	0	0	logfile
✔	9LVB	63418	2025-09-17	2025-02-12	3.97	4.20	4.01	4.1	0.003	0.59	0.0	0.04	16.71	0.00	2.055	11.48	2.51	5.8	94.2	0.0	-0.96	0.66	0.72	1.70	4.1	0.003	0.68	0.0	0.04	17.04	0.00	2.505	9.75	3.99	5.0	95.0	0.0	-0.43	1.65	0.68	0.73	1.06	8192	1060	4	0	0	0	0	logfile
✔	9iBH	52810	2025-09-18	2025-02-12	2.5	3.08	2.56	2.9	0.006	0.98	0.0	0.06	15.65	0.04	2.108	5.94	2.85	3.9	96.1	0.0	-0.85	0.82	0.88	2.86	2.9	0.003	0.56	0.0	0.04	16.21	0.00	2.593	5.24	0.88	2.0	98.0	0.0	2.42	0.77	0.77	0.87	3.93	12906	1691	7	0	0	47	0	logfile
✔	9NAB	49184	2025-09-17	2025-02-11	2.54	3.26	2.57	3.1	0.004	0.80	1.0	0.05	17.25	0.01	2.416	15.69	5.35	5.5	94.4	0.1	-1.72	0.72	0.68	1.63	3.1	0.004	0.74	0.0	0.05	17.83	0.00	2.409	17.79	3.85	5.8	94.2	0.0	-1.50	1.70	0.68	0.65	1.58	8498	1106	4	0	0	0	0	logfile

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