Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9iHE	52866	2025-09-19	2025-02-21	2.95	3.33	3.03	3.2	0.008	0.56	0.0	0.04	24.94	0.00	2.129	7.11	1.43	2.1	97.9	0.0	1.02	0.77	0.84	2.74	3.2	0.005	0.72	1.0	0.04	24.86	0.00	2.248	5.95	2.55	2.1	97.9	0.1	1.53	0.19	0.75	0.87	2.62	21069	1870	16	290	8	0	0	logfile
✔	9NGC	49382	2025-09-18	2025-02-21	2.8	3.25	2.96	3.2	0.004	0.73	0.0	0.05	11.95	0.01	2.227	2.33	0.00	3.2	96.8	0.0	-0.75	0.57	0.82	4.24	3.2	0.002	0.49	0.0	0.04	14.87	0.00	2.610	3.64	1.88	3.5	96.5	0.0	0.71	1.27	0.54	0.81	3.54	12722	1550	10	0	7	0	0	logfile
✔	9iHF	52870	2025-09-19	2025-02-21	3.16	3.00	—	3.3	0.003	0.53	0.0	0.04	23.77	0.00	2.195	6.98	1.58	2.2	97.8	0.0	1.56	0.84	0.85	2.53	3.3	0.004	0.55	0.0	0.04	23.28	0.00	2.494	5.46	2.06	2.2	97.8	0.0	1.82	0.22	0.86	0.89	2.63	25213	2424	21	266	21	0	0	logfile
✔	9NFJ	49367	2025-09-17	2025-02-21	3.98	4.14	3.93	4.1	0.003	0.66	0.0	0.04	18.28	0.00	2.111	13.97	3.01	4.7	95.3	0.0	0.93	0.69	0.76	0.56	4.0	0.003	0.70	0.0	0.04	18.73	0.00	2.511	12.66	3.98	4.3	95.7	0.0	1.22	0.37	0.69	0.76	0.56	8698	1122	1	0	0	0	0	logfile
✔	9iHC	52864	2025-09-17	2025-02-21	2.95	3.58	3.00	3.4	0.003	0.58	0.0	0.04	14.94	0.00	2.349	5.33	0.62	2.0	98.0	0.0	0.55	0.84	0.88	3.98	3.4	0.003	0.53	0.0	0.04	15.90	0.00	2.607	5.10	2.08	1.8	98.2	0.0	1.23	0.35	0.83	0.87	4.01	4288	560	3	0	0	0	0	logfile
✔	9NFi	49366	2025-09-17	2025-02-21	3.79	4.14	3.91	4.0	0.003	0.62	0.0	0.04	16.38	0.00	2.046	15.18	1.19	6.4	93.6	0.0	0.44	0.68	0.71	0.38	4.0	0.003	0.70	0.0	0.04	17.47	0.00	2.570	11.11	3.56	4.5	95.5	0.0	0.77	0.62	0.68	0.73	0.36	8664	1116	1	0	0	0	0	logfile
✔	9NFM	49370	2025-09-17	2025-02-21	3.89	4.33	4.05	4.2	0.006	0.68	0.0	0.05	17.42	0.00	2.021	16.88	2.76	6.0	94.0	0.0	0.38	0.61	0.64	0.78	4.2	0.003	0.79	0.0	0.04	17.93	0.00	2.423	15.14	3.29	5.0	95.0	0.0	0.42	1.71	0.65	0.77	0.90	8850	1142	2	0	1	0	0	logfile
✔	9iHD	52865	2025-09-18	2025-02-21	2.97	3.31	3.04	3.2	0.005	0.59	0.0	0.04	26.62	0.01	2.177	6.76	2.78	1.9	98.1	0.0	1.52	0.75	0.83	2.60	3.2	0.006	0.61	0.0	0.04	26.65	0.00	2.139	5.46	2.69	2.2	97.8	0.0	1.74	0.17	0.77	0.89	2.66	16508	1313	13	290	4	0	0	logfile
✔	9NFK	49368	2025-09-17	2025-02-21	3.99	4.16	3.98	4.1	0.004	0.57	0.0	0.04	16.99	0.00	1.971	17.50	3.37	5.2	94.8	0.0	1.45	0.61	0.69	0.80	4.1	0.004	0.76	0.0	0.04	17.54	0.00	2.579	15.65	3.37	4.2	95.8	0.0	1.32	1.94	0.62	0.69	0.80	6975	898	1	0	0	0	0	logfile
✔	9NFL	49369	2025-09-17	2025-02-21	4.02	4.21	4.07	4.1	0.004	0.65	0.0	0.04	16.86	0.00	1.984	22.17	2.04	6.2	93.8	0.0	-0.12	0.61	0.70	—	4.1	0.003	0.67	0.0	0.04	14.57	0.00	2.468	12.09	0.00	3.3	96.6	0.1	0.22	0.73	0.60	0.69	—	6936	893	1	0	0	0	0	logfile
✔	9NEZ	49340	2025-09-18	2025-02-20	3.47	3.04	3.53	1.5	0.005	1.03	0.0	0.04	11.90	0.00	2.210	8.58	3.48	3.6	96.4	0.0	-0.35	0.88	0.78	1.46	1.5	0.005	1.28	0.0	0.05	15.08	0.00	2.219	14.19	3.35	4.2	95.7	0.1	-0.74	1.13	0.89	0.82	1.16	21120	2596	16	0	20	0	0	logfile
✔	9NES	49333	2025-09-17	2025-02-20	2.67	2.96	2.61	3.0	0.011	1.03	0.0	0.05	16.43	0.01	2.241	6.08	0.00	1.6	98.4	0.0	-0.70	0.65	0.87	4.74	3.0	0.003	0.57	0.0	0.04	14.75	0.01	2.504	4.84	0.88	1.6	98.4	0.0	3.11	0.31	0.60	0.86	3.34	6651	800	12	0	34	9	0	logfile
✔	9NEU	49336	2025-09-17	2025-02-20	2.98	3.17	2.56	3.1	0.003	0.63	0.0	0.04	14.23	0.01	2.307	7.57	0.00	7.2	92.8	0.0	-0.60	0.69	0.82	3.72	3.1	0.005	0.77	0.0	0.05	16.70	0.01	2.540	8.83	3.79	9.6	90.4	0.0	-1.35	0.91	0.68	0.84	3.76	3648	432	4	0	0	0	0	logfile
✔	9LYP	63514	2025-09-17	2025-02-20	3.6	3.97	3.62	3.7	0.004	0.88	0.0	0.05	11.36	0.01	2.150	8.36	0.00	8.1	91.9	0.0	-0.89	0.82	0.76	2.48	3.7	0.004	0.76	0.0	0.04	14.22	0.00	2.401	8.56	2.21	6.4	93.6	0.0	-0.13	1.03	0.85	0.81	2.92	4882	635	4	0	2	0	0	logfile
✔	9NF0	49341	2025-09-18	2025-02-20	3.06	2.45	—	1.4	0.005	0.77	0.0	0.04	13.40	0.00	2.054	5.78	2.97	2.7	97.3	0.0	-0.33	0.92	0.87	4.13	1.4	0.003	0.74	0.0	0.04	14.97	0.00	2.083	7.03	1.69	2.5	97.5	0.0	0.22	0.44	0.93	0.90	3.50	21344	2611	16	0	24	0	0	logfile
✔	9NEC	49305	2025-09-17	2025-02-19	3.2	3.79	3.23	3.6	0.008	0.89	0.0	0.04	15.95	0.00	2.208	8.08	0.00	3.7	96.3	0.0	1.57	0.66	0.83	3.04	3.6	0.003	0.62	0.0	0.04	15.25	0.00	2.451	6.70	1.00	3.3	96.6	0.1	1.64	0.39	0.66	0.84	3.11	10239	1287	11	0	35	1	0	logfile
✔	9NE8	49301	2025-09-18	2025-02-19	3.6	3.85	3.72	4.0	0.005	0.92	0.0	0.06	17.12	0.01	2.484	8.88	0.18	3.8	96.2	0.0	-1.96	0.70	0.64	0.74	3.9	0.003	0.77	0.0	0.04	18.79	0.00	2.462	14.29	2.60	3.1	96.9	0.0	-0.99	0.49	0.71	0.67	0.54	16242	1921	7	46	1	0	0	logfile
✔	9NEG	49308	2025-09-17	2025-02-19	3.17	3.80	3.19	3.6	0.008	0.88	0.0	0.04	15.89	0.00	2.202	9.12	0.00	4.9	95.1	0.0	1.47	0.64	0.84	2.82	3.6	0.003	0.63	0.0	0.04	15.50	0.00	2.433	7.63	2.27	4.2	95.8	0.0	1.88	0.49	0.61	0.84	2.61	10596	1276	11	0	36	1	0	logfile
✔	9NEi	49311	2025-09-17	2025-02-19	2.97	3.76	3.05	3.5	0.009	1.03	0.0	0.04	15.98	0.01	2.229	7.56	0.00	2.1	97.9	0.0	-1.01	0.61	0.86	3.61	3.5	0.003	0.70	0.0	0.04	15.36	0.00	2.463	7.07	1.80	0.9	99.1	0.0	3.20	0.94	0.58	0.83	3.05	7056	855	9	0	34	1	0	logfile
✔	9LYC	63523	2025-09-17	2025-02-19	3.06	2.38	3.19	2.1	0.004	0.68	0.0	0.04	15.52	0.01	2.034	12.59	0.75	3.8	96.2	0.0	0.99	0.73	0.74	1.64	2.1	0.004	0.70	0.0	0.04	16.95	0.00	2.495	9.80	3.28	4.3	95.7	0.0	1.00	0.67	0.76	0.78	1.84	10056	1312	6	0	0	0	0	logfile

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