Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9M0S	63562	2025-09-17	2025-02-25	3.5	3.73	3.47	3.7	0.010	1.18	0.0	0.07	13.21	0.01	2.279	5.66	0.00	3.3	96.7	0.0	-3.69	0.46	0.77	2.61	3.7	0.004	0.64	0.0	0.04	15.36	0.00	2.520	9.14	3.01	2.6	97.4	0.0	1.13	0.44	0.42	0.75	1.21	3413	424	2	0	1	0	0	logfile
✔	9M0R	63561	2025-09-17	2025-02-25	2.47	3.20	2.68	3.1	0.004	0.59	0.0	0.04	16.77	0.00	2.528	7.42	2.57	4.5	95.5	0.0	0.40	0.73	0.85	3.59	3.1	0.003	0.60	0.0	0.04	17.21	0.00	2.519	6.98	3.81	4.5	95.5	0.0	0.39	0.37	0.62	0.82	3.46	9020	1160	7	0	1	0	0	logfile
✔	9Ni9	49457	2025-09-18	2025-02-25	3.8	4.07	3.78	4.0	0.021	1.73	0.0	0.13	11.71	0.01	2.174	1.47	0.00	3.0	97.0	0.0	0.07	0.73	0.81	2.61	3.9	0.006	0.77	0.0	0.05	13.80	0.00	2.328	7.58	1.63	5.5	94.5	0.0	-0.40	0.81	0.74	0.83	1.96	14956	1660	19	0	277	0	0	logfile
✔	9NHo	49418	2025-09-18	2025-02-24	3.8	4.06	3.83	4.0	0.021	1.73	0.0	0.14	11.40	0.01	2.280	0.71	0.27	2.8	97.2	0.0	0.80	0.74	0.78	2.10	4.0	0.003	0.69	0.0	0.04	13.15	0.00	2.518	6.71	1.24	4.3	95.7	0.0	0.24	0.89	0.74	0.78	1.71	14784	1635	21	0	276	0	0	logfile
✔	9NHM	49416	2025-09-18	2025-02-24	4.0	4.31	4.11	4.2	0.021	1.73	0.0	0.14	11.90	0.01	2.201	1.26	0.00	2.8	97.2	0.0	0.34	0.73	0.80	—	4.2	0.004	0.68	0.0	0.04	12.85	0.00	2.477	7.21	1.30	3.7	96.3	0.0	0.50	0.81	0.74	0.81	—	14897	1640	20	0	283	0	0	logfile
✔	9NHH	49411	2025-09-18	2025-02-24	3.0	3.19	2.99	3.1	0.005	0.99	0.0	0.06	12.34	0.01	2.267	0.23	0.00	1.7	98.3	0.0	0.70	0.71	0.82	3.79	3.1	0.003	0.56	0.0	0.04	12.59	0.00	2.497	3.91	1.35	1.7	98.3	0.0	0.59	1.21	0.74	0.84	3.66	15606	1664	32	0	322	0	0	logfile
✔	9NHL	49415	2025-09-18	2025-02-24	3.7	3.90	3.73	3.8	0.022	1.73	0.0	0.14	11.80	0.01	2.354	1.11	0.00	2.9	97.1	0.0	0.29	0.73	0.82	2.88	3.8	0.004	0.70	0.0	0.05	13.91	0.00	2.233	5.91	1.76	4.7	95.3	0.0	-0.35	0.81	0.73	0.82	2.44	15003	1659	21	0	277	0	0	logfile
✔	9M0D	63543	2025-09-17	2025-02-24	3.41	3.65	3.38	3.6	0.005	0.66	0.0	0.04	12.64	0.01	2.064	6.57	0.58	6.0	94.0	0.0	-1.04	0.64	0.74	2.91	3.6	0.006	0.69	0.0	0.04	13.18	0.00	2.494	7.95	5.56	9.7	90.2	0.1	-0.55	0.93	0.67	0.80	2.56	6312	1044	4	0	0	0	0	logfile
✔	9NHi	49412	2025-09-18	2025-02-24	3.1	3.40	3.16	3.4	0.005	0.99	0.0	0.06	11.53	0.01	2.249	0.90	0.00	2.1	97.9	0.0	0.59	0.73	0.84	3.60	3.3	0.003	0.61	0.0	0.04	12.62	0.00	2.477	4.68	1.50	3.3	96.7	0.0	0.31	0.65	0.74	0.85	3.16	15028	1636	26	0	283	0	0	logfile
✔	9NHJ	49413	2025-09-18	2025-02-24	3.04	3.30	3.11	3.2	0.005	1.03	0.0	0.06	11.82	0.01	2.249	0.84	0.00	2.6	97.4	0.0	0.51	0.71	0.76	3.19	3.2	0.005	0.69	0.0	0.05	12.73	0.00	2.467	6.28	0.87	4.2	95.8	0.0	-0.08	0.66	0.74	0.80	2.69	15437	1684	24	0	297	0	0	logfile
✔	9NH8	49406	2025-09-18	2025-02-24	3.2	2.35	3.34	2.1	0.005	0.76	0.0	0.04	25.58	0.01	2.074	9.86	0.78	3.5	96.4	0.1	-0.75	0.72	0.70	1.74	2.1	0.003	0.60	0.0	0.04	25.65	0.00	2.242	7.53	1.64	3.1	96.9	0.0	1.06	0.92	0.76	0.79	1.75	18500	1493	13	312	0	0	0	logfile
✔	9NHK	49414	2025-09-18	2025-02-24	4.1	4.16	3.85	4.0	0.022	1.74	0.0	0.14	11.30	0.01	2.358	0.91	0.00	3.1	96.9	0.0	0.69	0.73	0.83	—	4.0	0.004	0.69	0.0	0.04	11.68	0.00	2.484	6.39	0.00	4.8	95.2	0.0	0.46	1.41	0.73	0.83	—	14953	1641	19	0	287	0	0	logfile
✔	9NHN	49417	2025-09-18	2025-02-24	3.9	4.19	4.01	4.1	0.022	1.74	0.0	0.14	11.41	0.01	2.332	1.45	0.00	3.6	96.4	0.0	0.46	0.73	0.80	2.02	4.1	0.003	0.73	0.0	0.05	13.58	0.00	2.457	6.79	1.42	4.9	95.1	0.0	0.07	0.85	0.73	0.81	2.07	15064	1664	20	0	281	0	0	logfile
✔	9NH4	49400	2025-09-17	2025-02-23	3.9	3.57	3.75	4.1	0.005	0.89	0.0	0.06	13.84	0.01	2.216	20.84	0.00	7.7	92.3	0.0	-2.37	0.63	0.74	2.07	4.1	0.004	0.95	2.0	0.05	16.09	0.00	1.514	10.69	2.41	6.4	93.5	0.1	-1.34	0.68	0.66	0.80	2.12	11320	1375	10	0	5	0	0	logfile
✔	9NGi	49385	2025-09-18	2025-02-22	4.3	3.96	4.11	3.9	0.006	0.92	0.0	0.06	14.49	0.01	2.269	11.27	0.00	5.5	94.5	0.0	-1.25	0.64	0.76	—	3.9	0.003	0.64	0.0	0.05	13.87	0.00	2.537	9.76	0.00	5.3	94.7	0.0	-0.17	1.07	0.64	0.75	—	12729	1550	10	0	14	0	0	logfile
✔	9NGR	49391	2025-09-18	2025-02-22	3.8	3.32	3.60	3.7	0.019	0.84	0.0	0.06	14.03	0.01	2.395	7.92	0.36	4.9	95.1	0.0	-1.72	0.69	0.84	2.37	3.7	0.004	0.59	0.0	0.05	15.76	0.00	2.525	5.84	2.18	3.9	96.0	0.1	0.00	0.42	0.70	0.85	2.14	12551	1535	10	0	11	0	0	logfile
✔	9NGF	49383	2025-09-18	2025-02-22	3.4	2.78	3.36	3.4	0.004	0.72	0.0	0.05	13.59	0.00	2.311	6.79	0.00	5.6	94.4	0.0	-0.65	0.63	0.81	3.97	3.4	0.003	0.57	0.0	0.05	14.74	0.00	2.591	4.88	1.30	5.2	94.8	0.0	0.60	0.38	0.63	0.83	3.63	12585	1535	6	0	5	0	0	logfile
✔	9NGS	49392	2025-09-18	2025-02-22	4.2	3.61	4.05	4.1	0.006	0.87	0.0	0.06	13.91	0.01	2.305	4.04	0.00	4.9	95.1	0.0	-1.32	0.68	0.82	—	4.1	0.003	0.61	0.0	0.05	13.88	0.00	2.536	6.60	0.00	3.9	96.1	0.0	0.10	0.98	0.68	0.82	—	12549	1535	10	0	9	0	0	logfile
✔	9NGQ	49390	2025-09-18	2025-02-22	3.8	3.32	3.60	3.7	0.010	0.78	0.0	0.05	14.01	0.01	2.202	8.20	0.00	4.7	95.3	0.0	-1.59	0.69	0.84	2.47	3.7	0.004	0.56	0.0	0.05	15.68	0.00	2.533	6.08	2.04	3.9	96.1	0.1	-0.01	0.40	0.70	0.85	2.08	12551	1535	10	0	11	0	0	logfile
✔	9NGG	49384	2025-09-18	2025-02-22	3.6	3.36	3.58	3.7	0.003	0.64	0.0	0.05	14.56	0.00	2.155	4.54	0.00	5.6	94.4	0.0	0.07	0.66	0.80	2.95	3.7	0.004	0.58	0.0	0.05	15.91	0.00	2.595	5.34	0.07	5.2	94.8	0.0	1.01	0.38	0.67	0.82	3.13	12617	1535	8	0	7	0	0	logfile

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