Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9NLX	49525	2025-09-18	2025-03-03	3.2	3.64	3.07	3.4	0.004	0.66	0.0	0.05	26.03	0.00	2.291	7.18	1.65	3.6	96.4	0.0	0.97	0.89	0.86	3.50	3.4	0.002	0.53	0.0	0.03	23.87	0.00	2.377	4.48	1.55	1.8	98.2	0.0	2.41	1.01	0.90	0.87	3.14	19770	1443	6	423	0	0	0	logfile
✔	9NL4	49517	2025-09-17	2025-03-02	4.6	6.06	4.63	4.1	0.008	1.14	0.0	0.09	21.03	0.01	1.621	24.68	0.00	13.1	86.0	0.8	-2.58	0.90	0.79	—	4.1	0.004	1.00	0.0	0.06	20.50	0.00	2.338	14.14	0.00	7.4	92.1	0.5	-0.34	1.32	0.91	0.85	—	10748	1107	6	92	4	0	0	logfile
✔	9NL3	49516	2025-09-17	2025-03-02	3.2	3.10	3.17	3.1	0.005	1.06	0.0	0.06	24.60	0.01	1.847	8.10	0.63	6.7	92.8	0.5	-1.43	0.77	0.82	2.25	3.1	0.003	0.81	0.0	0.04	23.83	0.00	2.000	7.47	1.99	4.8	95.0	0.2	0.19	0.43	0.76	0.83	2.12	11939	1079	6	156	6	0	0	logfile
✔	9QBF	52997	2025-09-17	2025-03-02	3.8	4.89	3.83	4.1	0.024	2.17	1.0	0.11	11.59	0.01	2.219	4.45	0.00	4.2	95.8	0.0	-0.09	0.80	0.64	0.72	4.1	0.003	0.67	0.0	0.04	14.56	0.00	2.414	12.84	1.39	7.4	92.6	0.0	-1.56	0.93	0.81	0.66	-0.07	7628	504	1	0	0	0	3736	logfile
✔	9NL2	49515	2025-09-17	2025-03-02	3.2	3.13	3.18	3.2	0.004	0.89	0.0	0.06	23.57	0.00	1.829	7.77	0.30	7.4	92.0	0.5	0.18	0.76	0.79	2.15	3.1	0.005	0.92	0.0	0.06	23.77	0.00	1.897	10.09	3.25	5.8	93.8	0.4	0.42	1.13	0.77	0.82	1.92	12138	1107	6	156	6	0	0	logfile
✔	9QBG	52998	2025-09-17	2025-03-02	3.6	4.53	3.59	4.0	0.021	1.86	0.0	0.10	11.30	0.01	2.229	1.69	0.00	2.6	97.4	0.0	0.66	0.85	0.74	0.72	4.0	0.003	0.60	0.0	0.04	13.61	0.00	2.423	4.04	0.46	6.4	93.6	0.0	0.64	3.00	0.85	0.74	0.72	7684	508	1	0	0	0	3767	logfile
✔	9QBB	52996	2025-09-19	2025-03-01	3.3	3.63	—	3.5	0.004	0.72	0.0	0.05	12.62	0.00	2.433	10.93	0.19	4.5	95.5	0.0	-0.48	0.63	0.79	2.14	3.5	0.004	0.69	0.0	0.04	15.10	0.00	2.419	10.18	1.89	4.9	95.1	0.0	-0.07	0.71	0.64	0.81	1.93	23257	2911	1	0	0	0	0	logfile
✔	9QAX	52978	2025-09-18	2025-02-28	3.3	3.80	3.34	3.0	0.009	1.20	1.0	0.08	22.04	0.01	1.305	6.76	0.09	6.3	93.3	0.4	-3.15	0.82	0.77	0.94	3.2	0.003	0.65	0.0	0.03	22.26	0.00	2.143	8.90	0.93	3.8	96.0	0.2	0.39	1.47	0.81	0.74	1.19	15471	1247	6	260	0	0	0	logfile
✔	9QB2	52983	2025-09-18	2025-02-28	3.0	2.84	3.05	3.1	0.009	1.24	0.0	0.09	18.53	0.01	1.439	1.13	0.27	1.8	98.2	0.0	-1.61	0.64	0.75	3.79	3.0	0.004	0.63	0.0	0.04	19.92	0.00	2.464	6.37	2.03	2.1	97.9	0.0	-0.17	1.31	0.72	0.83	3.49	17807	1674	11	207	0	0	0	logfile
✔	9QAZ	52980	2025-09-18	2025-02-28	3.6	4.01	3.59	3.2	0.009	1.23	1.0	0.08	22.03	0.01	1.313	6.94	0.09	6.3	93.3	0.4	-3.06	0.82	0.74	1.03	3.2	0.002	0.62	0.0	0.03	22.30	0.00	2.279	9.50	1.30	3.9	95.8	0.2	0.35	1.83	0.78	0.68	1.34	15471	1247	6	260	0	0	0	logfile
✔	9QAJ	52975	2025-09-17	2025-02-28	2.95	3.99	3.07	3.3	0.005	0.58	0.0	0.03	28.27	0.00	2.149	9.35	0.32	2.5	97.5	0.0	2.60	0.92	0.89	2.24	3.3	0.006	0.64	0.0	0.03	28.51	0.00	2.457	8.57	2.05	3.4	96.6	0.0	3.03	0.27	0.91	0.91	2.19	12144	796	14	290	0	0	0	logfile
✔	9QB8	52990	2025-09-19	2025-02-28	3.4	3.61	—	3.4	0.005	0.74	0.0	0.05	17.11	0.01	2.227	10.86	0.44	3.7	96.3	0.0	0.16	0.84	0.83	2.07	3.4	0.004	0.59	0.0	0.04	16.98	0.00	2.302	7.52	2.01	3.4	96.6	0.0	0.98	0.42	0.85	0.84	1.86	22339	2803	2	0	1	0	0	logfile
✔	9M2F	63584	2025-09-17	2025-02-27	2.93	3.59	3.11	3.4	0.003	0.69	0.0	0.04	17.25	0.00	2.072	14.23	0.31	5.4	94.6	0.0	-0.34	0.70	0.82	2.29	3.5	0.006	0.80	0.0	0.05	18.17	0.00	2.445	11.91	3.77	7.2	92.7	0.1	-0.50	0.43	0.65	0.84	2.44	8935	1157	7	0	1	0	0	logfile
✔	9NJK	49485	2025-09-18	2025-02-27	3.37	4.19	3.41	3.8	0.003	0.62	0.0	0.04	13.38	0.00	2.038	11.30	0.07	1.7	98.3	0.0	0.69	0.76	0.77	1.14	3.8	0.007	0.84	0.0	0.05	15.19	0.00	1.835	13.04	1.16	3.8	96.2	0.0	0.13	0.94	0.77	0.80	1.35	13780	1789	10	0	8	0	0	logfile
✔	9NJR	49488	2025-09-18	2025-02-27	2.7	3.40	2.80	3.3	0.004	0.65	0.0	0.05	14.45	0.00	2.014	13.45	0.20	2.8	97.2	0.0	-0.15	0.66	0.77	2.13	3.3	0.003	0.65	0.0	0.04	16.62	0.00	1.957	9.96	2.30	1.9	98.1	0.0	0.52	0.96	0.63	0.77	1.88	13863	1776	9	0	6	0	0	logfile
✔	9M2H	63585	2025-09-17	2025-02-27	3.4	3.63	3.49	3.6	0.011	1.21	1.0	0.07	10.75	0.01	2.284	2.76	0.00	7.0	92.7	0.2	-6.52	0.59	0.79	4.05	3.6	0.004	0.63	0.0	0.04	14.18	0.00	2.564	3.64	2.53	4.4	95.6	0.0	-2.36	0.57	0.57	0.80	2.05	3453	431	2	0	1	0	0	logfile
✔	9QA6	52972	2025-09-17	2025-02-27	2.81	3.39	2.68	3.2	0.008	0.88	0.0	0.05	15.06	0.01	2.022	9.59	5.01	2.6	97.4	0.0	-0.08	0.83	0.88	4.99	3.2	0.003	0.57	0.0	0.04	14.86	0.00	2.007	6.32	1.85	2.6	97.4	0.0	0.18	0.86	0.83	0.88	4.55	7043	845	2	0	11	151	0	logfile
✔	9M1H	63571	2025-09-17	2025-02-26	2.55	2.99	2.64	2.9	0.010	0.89	3.0	0.07	10.11	0.01	2.162	6.35	1.62	3.7	96.3	0.0	-1.64	0.53	0.71	3.49	2.9	0.003	0.61	0.0	0.04	15.47	0.00	2.290	5.71	2.42	3.7	96.3	0.0	1.33	1.43	0.59	0.83	3.73	7055	910	5	0	1	1	0	logfile
✔	9M1o	63578	2025-09-17	2025-02-26	2.49	3.20	2.69	3.0	0.004	0.56	0.0	0.04	17.14	0.00	2.139	7.59	0.51	3.2	96.8	0.0	0.68	0.76	0.88	3.81	3.0	0.012	0.66	0.0	0.04	17.66	0.00	2.479	7.09	2.44	3.9	96.1	0.0	0.68	1.08	0.66	0.85	3.72	9085	1164	7	0	1	0	0	logfile
✔	9Q96	52919	2025-09-18	2025-02-26	4.6	4.44	4.58	4.1	0.031	2.83	326.0	0.20	18.14	0.02	1.495	10.09	0.00	10.8	86.7	2.5	-4.05	0.81	0.71	—	4.2	0.007	1.10	0.0	0.05	18.46	0.00	2.392	8.49	0.00	20.9	78.0	1.1	-3.58	1.59	0.79	0.73	—	19633	3621	8	87	0	0	0	logfile

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