Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9QG1	53127	2025-09-19	2025-03-13	3.3	3.70	3.41	3.6	0.004	0.67	0.0	0.05	19.11	0.00	1.372	6.82	3.69	4.3	95.0	0.7	1.97	0.67	0.65	1.12	3.6	0.003	0.55	0.0	0.04	18.74	0.00	1.237	6.20	2.70	3.0	97.0	0.0	2.95	1.05	0.75	0.79	1.62	21968	2736	32	0	48	0	0	logfile
✔	9M9Y	63744	2025-09-17	2025-03-13	3.04	3.54	3.11	3.5	0.009	1.35	1.0	0.09	10.66	0.01	2.386	7.64	0.00	3.0	97.0	0.0	0.31	0.50	0.77	1.76	3.5	0.003	0.59	0.0	0.04	13.69	0.00	2.584	4.83	1.77	1.3	98.7	0.0	2.88	1.39	0.47	0.75	1.33	3668	475	1	0	0	0	0	logfile
✔	9NQU	49676	2025-09-18	2025-03-13	3.16	3.46	—	3.1	0.005	0.79	0.0	0.07	28.78	0.00	2.012	38.25	1.83	7.7	92.3	0.0	0.16	0.78	0.70	0.48	3.1	0.005	0.83	1.0	0.04	28.03	0.00	2.010	12.21	3.95	4.6	95.4	0.0	1.27	1.07	0.81	0.74	0.65	17358	1229	12	370	3	0	0	logfile
✔	9M9V	63741	2025-09-17	2025-03-13	3.31	3.80	3.40	3.7	0.012	1.40	2.0	0.09	12.13	0.01	2.402	2.78	0.51	2.3	97.7	0.0	-0.35	0.53	0.74	2.36	3.7	0.003	0.63	0.0	0.04	15.88	0.00	2.346	7.69	1.78	2.5	97.3	0.2	2.67	1.99	0.52	0.75	1.50	3765	496	2	0	1	0	0	logfile
✔	9M84	63701	2025-09-19	2025-03-11	3.61	3.95	3.79	3.8	0.004	0.78	0.0	0.04	17.91	0.01	1.876	6.19	0.41	7.6	92.3	0.1	-1.95	0.74	0.67	0.95	3.8	0.003	0.74	0.0	0.05	18.79	0.01	1.972	13.04	2.31	5.3	94.7	0.0	-1.19	0.99	0.74	0.66	0.77	24018	2931	8	58	3	0	0	logfile
✔	9NoT	49616	2025-09-17	2025-03-10	3.8	3.07	—	3.4	0.003	0.69	0.0	0.04	13.72	0.00	2.550	8.29	0.00	2.2	97.8	0.0	0.15	0.73	0.72	2.59	3.4	0.004	0.70	0.0	0.05	15.46	0.00	2.524	8.21	1.72	2.6	97.4	0.0	0.36	0.52	0.77	0.77	2.33	12359	1542	4	0	16	0	0	logfile
✔	9NoY	49621	2025-09-17	2025-03-10	3.7	3.83	3.57	3.8	0.003	0.61	0.0	0.04	17.43	0.01	2.625	9.70	1.33	2.0	98.0	0.0	1.89	0.48	0.81	1.26	3.8	0.003	0.70	0.0	0.04	18.09	0.01	2.601	9.70	5.78	2.4	97.6	0.0	2.76	0.51	0.50	0.80	1.98	2031	257	1	0	0	0	0	logfile
✔	9NoS	49612	2025-09-18	2025-03-10	3.5	2.57	—	3.6	0.003	0.66	0.0	0.05	17.37	0.00	2.528	7.96	2.27	2.9	97.1	0.0	0.50	0.76	0.78	1.55	3.6	0.003	0.63	0.0	0.04	17.44	0.00	2.551	7.00	4.33	2.6	97.4	0.0	0.76	1.20	0.75	0.78	1.27	12555	1565	4	0	16	0	0	logfile
✔	9NoR	49608	2025-09-18	2025-03-10	3.4	2.47	—	3.5	0.004	0.68	0.0	0.05	17.33	0.00	1.892	8.48	1.91	2.9	97.1	0.0	0.50	0.74	0.77	1.41	3.5	0.003	0.65	0.0	0.04	17.51	0.00	2.520	7.48	4.84	2.8	97.2	0.0	0.72	0.31	0.73	0.79	1.36	12555	1565	4	0	16	0	0	logfile
✔	9NoW	49619	2025-09-17	2025-03-10	3.1	3.59	3.24	3.6	0.004	0.65	0.0	0.05	17.10	0.01	2.420	7.76	0.97	1.4	98.6	0.0	0.46	0.73	0.83	2.70	3.5	0.004	0.95	1.0	0.04	17.13	0.00	2.314	6.90	4.14	1.5	98.5	0.0	0.87	0.63	0.69	0.83	2.38	7624	936	4	0	15	0	0	logfile
✔	9NoV	49618	2025-09-17	2025-03-10	3.3	3.72	3.42	3.7	0.005	0.57	0.0	0.04	17.38	0.00	2.451	5.36	3.05	1.4	98.6	0.0	0.57	0.72	0.86	2.75	3.7	0.003	0.51	0.0	0.04	17.00	0.00	2.508	5.43	2.44	1.0	99.0	0.0	0.89	0.26	0.72	0.85	2.61	7647	936	5	0	17	0	0	logfile
✔	9NoU	49617	2025-09-17	2025-03-10	2.8	3.00	2.81	3.0	0.004	0.69	0.0	0.05	17.49	0.00	2.394	6.80	1.24	1.1	98.9	0.0	0.16	0.65	0.84	3.03	3.0	0.003	0.59	0.0	0.05	17.62	0.00	2.489	6.32	4.08	1.0	99.0	0.0	0.99	1.00	0.68	0.86	3.08	7519	923	4	0	15	0	0	logfile
✔	9M7o	62355	2025-09-17	2025-03-10	4.14	3.30	4.07	3.7	0.006	0.77	0.0	0.04	10.26	0.00	2.128	7.00	0.00	2.1	97.9	0.0	0.47	0.68	0.60	—	3.2	0.003	0.72	0.0	0.05	13.41	0.00	2.374	9.00	0.10	2.9	97.0	0.1	0.68	1.61	0.72	0.71	—	9327	1179	5	0	0	0	0	logfile
✔	9NoX	49620	2025-09-17	2025-03-10	3.0	3.31	3.08	3.3	0.003	0.52	0.0	0.04	17.59	0.00	2.428	6.25	2.08	2.2	97.8	0.0	0.99	0.63	0.87	2.95	3.3	0.003	0.53	0.0	0.04	17.84	0.00	2.458	5.49	3.58	2.2	97.8	0.0	1.42	0.32	0.63	0.87	2.91	7965	1015	5	0	0	0	0	logfile
✔	9No2	49592	2025-09-17	2025-03-07	3.05	3.28	3.05	3.3	0.003	0.62	0.0	0.05	13.60	0.00	2.181	4.67	0.00	5.6	94.4	0.0	-0.39	0.67	0.78	3.00	3.3	0.002	0.53	0.0	0.04	16.07	0.00	2.550	4.30	2.08	5.6	94.4	0.0	0.18	0.32	0.62	0.77	2.58	11996	1556	4	0	0	0	0	logfile
✔	9QE7	53049	2025-09-17	2025-03-07	4.4	2.59	4.17	4.5	0.003	0.82	0.0	0.05	13.42	0.00	2.043	29.46	0.00	10.8	88.9	0.3	-3.15	0.73	0.61	—	2.1	0.004	0.87	0.0	0.06	13.04	0.00	2.453	25.68	0.00	11.7	88.0	0.3	-3.92	1.78	0.74	0.59	—	10826	1483	1	0	0	0	0	logfile
✔	9M5Q	63647	2025-09-17	2025-03-06	3.3	3.34	2.64	3.6	0.009	1.18	0.0	0.07	11.53	0.00	2.306	0.48	0.24	9.9	89.7	0.4	-2.27	0.47	0.68	6.52	3.6	0.004	0.60	0.0	0.05	16.27	0.00	2.239	8.73	3.10	12.4	87.4	0.2	-2.60	1.33	0.48	0.72	5.48	8421	567	21	0	0	0	4263	logfile
✔	9NNF	49573	2025-09-17	2025-03-05	3.8	3.84	3.63	3.9	0.004	0.72	0.0	0.04	12.25	0.01	2.553	3.17	0.00	3.3	96.7	0.0	0.39	0.67	0.82	3.05	3.9	0.003	0.60	0.0	0.04	16.31	0.00	2.508	8.17	2.35	4.1	95.9	0.0	1.23	1.58	0.70	0.84	2.20	4185	526	4	0	0	0	0	logfile
✔	9M54	63637	2025-09-17	2025-03-05	3.24	4.13	3.45	3.9	0.005	0.81	0.0	0.05	18.16	0.01	2.166	12.97	1.14	5.6	94.4	0.0	-0.80	0.71	0.79	1.78	3.9	0.004	0.90	0.0	0.05	17.98	0.00	2.350	16.29	3.54	5.3	94.7	0.0	-0.49	1.90	0.69	0.84	1.83	8989	1162	7	0	1	0	0	logfile
✔	9NLX	49525	2025-09-18	2025-03-03	3.2	3.64	3.07	3.4	0.004	0.66	0.0	0.05	26.03	0.00	2.291	7.18	1.65	3.6	96.4	0.0	0.97	0.89	0.86	3.50	3.4	0.002	0.53	0.0	0.03	23.87	0.00	2.377	4.48	1.55	1.8	98.2	0.0	2.41	1.01	0.90	0.87	3.14	19770	1443	6	423	0	0	0	logfile

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