Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9QLE	53225	2025-09-18	2025-03-20	2.8	3.57	2.84	3.3	0.005	0.97	0.0	0.05	15.67	0.01	2.373	1.71	1.52	3.2	96.8	0.0	-1.38	0.82	0.84	3.06	3.3	0.006	0.66	0.0	0.05	15.82	0.00	2.146	7.54	2.25	3.6	96.4	0.0	0.12	0.34	0.79	0.82	3.26	13820	1695	2	0	12	0	0	logfile
✔	9U47	63833	2025-09-17	2025-03-19	3.4	2.62	3.36	1.9	0.006	0.90	1.0	0.05	16.67	0.01	2.256	8.22	0.00	5.6	94.4	0.0	-2.80	0.66	0.57	2.51	1.9	0.003	0.64	0.0	0.04	18.63	0.00	2.400	15.65	2.15	3.3	96.7	0.0	0.29	1.34	0.69	0.64	1.83	3374	308	2	42	0	0	0	logfile
✔	9U48	63834	2025-09-17	2025-03-19	2.99	2.34	2.98	2.1	0.006	0.75	0.0	0.05	20.56	0.00	2.204	15.47	0.00	6.6	93.4	0.0	-1.25	0.71	0.68	3.31	2.1	0.005	0.64	0.0	0.04	20.41	0.00	2.520	10.79	2.94	5.1	94.9	0.0	-0.80	0.47	0.72	0.71	2.88	3790	335	3	49	1	0	0	logfile
✔	9NU1	49792	2025-09-17	2025-03-19	3.6	4.02	2.94	4.0	0.004	0.87	0.0	0.05	20.81	0.00	2.475	8.03	1.83	4.2	95.8	0.0	-1.71	0.77	0.79	2.04	3.9	0.005	0.85	0.0	0.05	16.83	0.00	2.521	9.43	6.97	4.8	95.2	0.0	-1.50	1.17	0.78	0.80	2.10	5092	628	10	0	15	0	0	logfile
✔	9U3Q	63824	2025-09-17	2025-03-18	3.37	2.34	3.33	3.2	0.003	0.62	0.0	0.04	16.93	0.00	2.109	9.68	0.00	1.7	98.1	0.2	2.18	0.63	0.61	1.46	3.0	0.003	0.58	0.0	0.04	17.66	0.00	2.608	10.58	3.07	1.9	98.1	0.0	3.44	0.94	0.64	0.61	1.58	3853	482	1	0	0	0	0	logfile
✔	9U3P	63823	2025-09-17	2025-03-18	2.65	2.81	2.70	2.9	0.002	0.45	0.0	0.04	17.92	0.00	2.215	8.35	2.77	2.4	97.6	0.0	0.85	0.64	0.85	3.78	2.9	0.003	0.50	0.0	0.04	18.03	0.00	2.252	6.76	1.80	1.8	98.2	0.0	1.46	0.83	0.65	0.85	3.51	6655	828	3	0	2	0	0	logfile
✔	9U3S	63826	2025-09-17	2025-03-18	3.1	2.29	3.08	2.9	0.003	0.62	0.0	0.04	18.34	0.00	2.147	12.25	1.09	0.7	99.3	0.0	0.92	0.76	0.76	1.73	2.9	0.003	0.60	0.0	0.04	18.54	0.00	2.607	10.48	4.62	1.7	98.3	0.0	2.65	0.43	0.75	0.76	2.00	3384	425	1	0	0	0	0	logfile
✔	9U3V	63828	2025-09-17	2025-03-18	3.2	2.32	3.38	3.0	0.002	0.46	0.0	0.04	17.95	0.00	2.211	7.91	0.00	1.7	98.3	0.0	0.67	0.75	0.74	2.00	3.0	0.003	0.56	0.0	0.04	18.44	0.00	2.585	9.08	2.96	2.7	97.3	0.0	3.26	1.05	0.75	0.75	2.13	3401	426	1	0	0	0	0	logfile
✔	9U3U	63827	2025-09-17	2025-03-18	3.5	2.37	3.42	3.1	0.002	0.51	0.0	0.04	17.92	0.00	2.197	9.54	0.41	2.2	97.8	0.0	0.92	0.69	0.67	0.98	3.0	0.003	0.64	0.0	0.04	18.45	0.00	2.518	10.14	4.29	2.4	97.6	0.0	1.73	0.50	0.70	0.67	1.02	6702	848	1	0	0	0	0	logfile
✔	9U3R	63825	2025-09-17	2025-03-18	3.23	2.34	3.32	2.9	0.002	0.57	0.0	0.04	17.68	0.00	2.172	9.03	0.14	1.5	98.5	0.0	0.94	0.69	0.65	1.15	2.9	0.004	0.67	0.0	0.04	18.05	0.00	2.522	11.97	4.02	2.4	97.6	0.0	1.17	1.09	0.72	0.69	1.20	6690	847	1	0	0	0	0	logfile
✔	9MC8	63792	2025-09-17	2025-03-17	3.31	3.92	3.44	3.9	0.005	0.85	0.0	0.04	15.34	0.01	2.353	11.30	0.26	3.3	96.7	0.0	0.19	0.43	0.67	1.71	3.9	0.003	0.64	0.0	0.04	15.80	0.01	2.560	5.65	2.31	1.9	98.1	0.0	2.84	0.48	0.49	0.73	1.98	3721	489	2	0	1	0	0	logfile
✔	9QHH	53169	2025-09-19	2025-03-15	3.1	3.65	—	3.3	0.006	0.81	0.0	0.05	17.22	0.01	2.114	15.67	0.84	3.7	96.2	0.2	-0.12	0.79	0.72	1.48	3.3	0.003	0.64	0.0	0.04	17.54	0.00	2.324	9.47	2.73	2.8	97.2	0.0	0.67	1.18	0.80	0.76	1.47	22339	2803	1	0	0	0	0	logfile
✔	9NR8	49725	2025-09-18	2025-03-14	3.53	3.82	3.59	3.8	0.004	0.72	1.0	0.05	17.14	0.01	1.787	4.85	0.15	5.5	94.5	0.0	-0.94	0.72	0.77	2.04	3.8	0.004	0.67	0.0	0.04	16.01	0.00	2.442	6.23	2.39	6.2	93.8	0.0	-0.52	0.44	0.71	0.79	2.26	14576	1958	18	0	22	0	0	logfile
✔	9QH3	53153	2025-09-19	2025-03-14	2.4	3.18	2.71	3.1	0.005	0.83	0.0	0.05	15.21	0.04	2.182	5.20	0.37	3.7	96.3	0.0	-1.39	0.70	0.81	3.72	3.1	0.003	0.56	0.0	0.04	16.00	0.00	2.379	2.46	0.67	2.4	97.6	0.0	1.90	0.57	0.71	0.83	4.30	25636	1684	10	3	0	45	12816	logfile
✔	9MAU	63758	2025-09-17	2025-03-14	2.87	3.31	2.79	3.3	0.010	1.39	0.0	0.09	12.11	0.01	2.403	4.62	0.00	2.2	97.8	0.0	-0.76	0.43	0.69	2.53	3.3	0.003	0.59	0.0	0.04	15.09	0.00	2.609	4.87	1.46	1.8	98.2	0.0	2.26	1.07	0.47	0.73	2.05	3874	506	1	0	0	0	0	logfile
✔	9NR9	49726	2025-09-18	2025-03-14	4.22	4.46	4.22	4.3	0.003	0.86	0.0	0.05	12.70	0.00	2.281	6.21	0.00	5.2	94.8	0.0	-1.29	0.69	0.72	—	4.3	0.003	0.67	0.0	0.04	12.77	0.00	2.461	10.09	0.08	5.1	94.9	0.0	0.54	0.54	0.70	0.74	—	13679	1865	10	0	4	0	0	logfile
✔	9NRA	49727	2025-09-18	2025-03-14	4.18	4.45	4.22	4.4	0.004	0.89	0.0	0.05	13.30	0.00	2.160	7.54	0.00	5.8	94.2	0.0	-1.74	0.67	0.70	—	4.4	0.005	0.77	0.0	0.04	13.33	0.00	2.445	15.26	0.00	6.6	93.3	0.1	-0.59	1.96	0.70	0.76	—	15598	1964	12	0	235	0	0	logfile
✔	9NR6	49723	2025-09-18	2025-03-14	3.26	3.49	3.31	3.5	0.003	0.62	0.0	0.05	16.71	0.00	2.281	4.39	0.11	3.4	96.6	0.0	-0.70	0.68	0.78	3.08	3.5	0.003	0.60	0.0	0.04	15.32	0.00	2.242	4.77	2.25	4.1	95.9	0.0	-0.39	1.39	0.71	0.83	3.18	19239	2512	26	0	36	0	0	logfile
✔	9QH0	53151	2025-09-18	2025-03-14	2.52	3.21	2.61	3.0	0.005	0.70	0.0	0.05	14.00	0.02	2.199	7.21	0.00	2.6	97.4	0.0	0.54	0.77	0.86	3.35	3.1	0.003	0.53	0.0	0.04	16.04	0.00	2.503	5.01	0.95	2.0	98.0	0.0	2.46	0.72	0.74	0.86	3.68	12946	1702	6	0	0	7	0	logfile
✔	9NR7	49724	2025-09-18	2025-03-14	4.18	4.40	4.16	4.3	0.003	0.82	0.0	0.05	12.99	0.00	2.228	6.44	0.07	5.8	94.2	0.0	-1.52	0.65	0.65	—	4.3	0.004	0.72	0.0	0.04	13.12	0.00	2.475	13.57	0.00	6.3	93.7	0.0	-0.80	0.72	0.68	0.71	—	15553	1958	12	0	235	0	0	logfile

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