Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9LJ2	63131	2025-09-18	2025-01-14	2.98	3.63	3.05	3.3	0.005	0.73	0.0	0.04	24.54	0.00	2.044	15.37	0.18	8.0	92.0	0.0	-0.69	0.87	0.84	1.94	3.3	0.003	0.67	0.0	0.04	25.02	0.00	2.053	11.38	1.48	6.5	93.5	0.0	0.36	0.45	0.88	0.85	1.17	21131	1861	14	294	4	0	0	logfile
✔	9HZE	52523	2025-09-18	2025-01-13	3.23	4.07	3.26	3.7	0.002	0.42	0.0	0.04	12.45	0.00	2.430	5.07	0.00	3.2	96.8	0.0	0.52	0.81	0.82	3.79	3.7	0.003	0.51	0.0	0.04	12.27	0.00	2.579	3.33	1.43	0.1	99.9	0.0	1.05	0.45	0.90	0.92	4.48	16152	2280	24	0	0	0	0	logfile
✔	9MUE	48630	2025-09-17	2025-01-13	4.0	4.21	3.13	4.2	0.005	0.81	0.0	0.05	18.80	0.01	2.101	15.60	1.00	4.9	94.5	0.6	0.03	0.66	0.86	—	4.2	0.003	0.67	0.0	0.04	18.44	0.00	2.523	12.26	2.90	5.5	94.4	0.1	-0.17	0.91	0.66	0.86	—	8438	1012	8	8	2	0	0	logfile
✔	9Li2	63110	2025-09-18	2025-01-13	3.72	4.08	3.70	4.1	0.014	0.67	0.0	0.06	20.73	0.00	2.126	9.18	0.43	2.8	97.2	0.0	0.73	0.56	0.70	2.19	4.1	0.003	0.47	0.0	0.04	15.14	0.00	2.442	4.63	1.74	3.0	97.0	0.0	0.93	0.29	0.52	0.68	2.04	12849	804	6	0	3	0	6333	logfile
✔	9MU4	48619	2025-09-18	2025-01-13	3.29	3.84	3.34	3.5	0.006	0.84	0.0	0.05	28.80	0.01	2.302	2.50	0.00	3.7	96.3	0.0	-1.86	0.90	0.86	2.88	3.5	0.004	0.62	0.0	0.03	28.92	0.00	2.301	8.49	2.23	3.8	96.2	0.0	2.31	0.35	0.91	0.88	2.29	12794	770	10	328	0	0	0	logfile
✔	9MTY	48616	2025-09-17	2025-01-12	3.05	2.52	2.94	2.9	0.009	1.16	0.0	0.08	21.34	0.01	2.052	2.43	0.39	2.4	97.2	0.3	-0.43	0.62	0.73	3.83	2.9	0.005	1.07	1.0	0.04	23.36	0.01	2.192	8.20	2.15	1.9	98.1	0.0	2.56	1.51	0.63	0.76	3.36	7106	586	9	112	4	0	0	logfile
✔	9LHM	63102	2025-09-18	2025-01-12	3.43	3.68	3.41	3.7	0.003	0.54	0.0	0.05	14.48	0.00	2.100	8.62	0.00	3.8	96.2	0.0	-0.48	0.56	0.66	1.76	3.7	0.003	0.58	0.0	0.05	16.25	0.00	2.092	6.03	1.15	3.7	96.3	0.0	-0.63	0.64	0.57	0.71	1.98	12768	786	3	0	0	0	6390	logfile
✔	9MT2	48598	2025-09-17	2025-01-10	2.9	2.23	2.88	1.9	0.005	0.68	0.0	0.04	12.22	0.01	2.123	9.02	0.08	4.0	96.0	0.0	0.87	0.74	0.74	3.14	2.0	0.005	0.68	0.0	0.04	14.01	0.00	2.471	9.36	1.50	5.1	94.9	0.0	0.54	0.41	0.73	0.75	2.89	11871	1410	24	0	42	0	0	logfile
✔	9MT6	48601	2025-09-17	2025-01-10	3.0	2.25	3.05	2.0	0.004	0.73	0.0	0.05	12.63	0.01	2.254	7.27	0.08	3.9	96.1	0.0	0.72	0.78	0.79	3.39	2.0	0.004	0.62	0.0	0.04	14.84	0.00	2.561	6.42	2.15	3.4	96.6	0.0	0.96	1.10	0.76	0.80	3.08	11243	1347	24	0	31	0	0	logfile
✔	9LGM	63068	2025-09-17	2025-01-10	2.84	2.19	2.85	1.9	0.004	0.61	0.0	0.04	16.71	0.00	2.028	13.12	0.24	2.9	97.1	0.0	0.64	0.80	0.81	3.05	2.0	0.002	0.57	0.0	0.04	17.34	0.00	2.449	7.99	3.81	2.7	97.3	0.0	1.13	1.10	0.78	0.80	2.45	8061	1049	5	0	0	0	0	logfile
✔	9LGW	63074	2025-09-17	2025-01-10	2.7	2.88	2.71	2.9	0.004	0.59	0.0	0.05	14.83	0.00	2.279	4.69	1.62	5.2	94.8	0.0	-1.08	0.59	0.70	2.61	2.9	0.003	0.55	0.0	0.05	15.69	0.00	2.270	4.49	1.26	6.2	93.8	0.0	-0.76	0.48	0.59	0.70	2.59	10043	603	2	0	0	0	5083	logfile
✔	9MSY	48591	2025-09-19	2025-01-10	3.4	3.65	3.46	3.6	0.005	1.06	0.0	0.06	15.85	0.02	2.285	2.49	0.47	6.8	93.2	0.0	-2.50	0.70	0.79	2.47	3.6	0.005	0.93	2.0	0.05	15.64	0.01	2.089	10.01	3.41	6.5	93.5	0.0	-1.60	0.52	0.71	0.81	2.47	24315	2952	42	0	90	0	0	logfile
✔	9MS8	48568	2025-09-17	2025-01-09	3.73	4.13	3.84	4.0	0.003	0.75	0.0	0.04	16.24	0.00	2.522	7.79	1.12	8.0	92.0	0.0	-0.91	0.65	0.82	2.19	4.0	0.003	0.73	0.0	0.04	17.06	0.00	2.461	8.87	4.06	7.5	92.5	0.0	-0.06	0.96	0.65	0.81	1.79	9290	1189	3	0	0	0	0	logfile
✔	9MSD	48575	2025-09-19	2025-01-09	3.2	3.50	3.26	3.5	0.005	0.92	0.0	0.05	13.63	0.02	2.298	0.69	0.57	5.1	94.9	0.0	-1.10	0.69	0.79	3.57	3.5	0.004	0.65	0.0	0.05	14.38	0.00	2.439	5.47	1.91	3.9	96.1	0.0	-0.40	0.46	0.74	0.84	3.27	24285	3036	27	0	48	0	0	logfile
✔	9MRN	48560	2025-09-18	2025-01-08	3.46	3.69	3.60	3.6	0.005	0.77	0.0	0.05	12.21	0.01	2.256	2.26	0.56	3.5	96.4	0.1	-0.30	0.71	0.84	2.54	3.6	0.003	0.59	0.0	0.04	15.31	0.00	2.585	3.98	2.46	2.6	97.3	0.1	1.65	1.24	0.70	0.84	1.69	18298	2350	12	0	0	0	0	logfile
✔	9MRM	48559	2025-09-18	2025-01-08	4.52	4.54	4.53	4.5	0.003	0.65	0.0	0.04	12.05	0.01	2.118	3.92	0.00	4.2	95.5	0.3	-0.82	0.68	0.74	—	4.4	0.004	0.74	0.0	0.04	13.06	0.00	2.392	10.13	0.00	4.5	95.3	0.2	0.38	1.45	0.70	0.77	—	18294	2350	12	0	0	0	0	logfile
✔	9MRX	48564	2025-09-19	2025-01-08	3.75	4.06	3.76	4.0	0.005	0.99	4.0	0.06	17.64	0.01	2.228	5.55	0.77	8.1	91.6	0.3	-2.85	0.66	0.77	1.47	4.0	0.002	0.59	0.0	0.04	17.64	0.00	2.551	8.96	2.30	7.0	92.8	0.2	-0.62	0.37	0.66	0.77	1.55	24165	2985	11	0	0	0	0	logfile
✔	9MRK	48557	2025-09-18	2025-01-08	3.62	3.87	3.77	3.8	0.003	0.59	0.0	0.04	11.69	0.01	2.242	2.37	0.00	4.1	95.7	0.2	-1.34	0.68	0.78	2.52	3.8	0.004	0.66	0.0	0.04	15.54	0.00	2.367	4.25	2.97	3.4	96.6	0.1	1.08	1.66	0.71	0.80	1.83	18298	2350	12	0	0	0	0	logfile
✔	9MRR	48562	2025-09-17	2025-01-08	4.28	4.50	4.27	4.4	0.006	1.21	1.0	0.07	13.13	0.01	2.303	8.67	0.30	9.8	90.1	0.1	-4.14	0.55	0.72	—	4.4	0.004	0.75	0.0	0.05	13.09	0.00	2.478	17.75	0.00	9.9	90.1	0.0	-2.05	1.21	0.56	0.73	—	6048	740	4	0	0	0	0	logfile
✔	9MRL	48558	2025-09-18	2025-01-08	4.17	4.28	4.19	4.2	0.004	0.68	0.0	0.05	12.02	0.01	2.140	3.76	0.00	4.1	95.6	0.3	-0.71	0.58	0.69	—	4.2	0.006	0.77	0.0	0.05	13.28	0.00	2.475	8.77	0.00	3.9	95.9	0.2	0.06	0.99	0.61	0.72	—	18294	2350	12	0	0	0	0	logfile

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