Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9HXA	52458	2025-09-17	2025-01-07	3.7	3.04	3.74	3.4	0.006	0.81	0.0	0.06	10.52	0.00	2.589	0.00	0.00	6.7	93.3	0.0	-2.61	0.24	0.67	5.09	3.7	0.003	0.67	0.0	0.05	14.01	0.00	2.659	7.50	11.63	11.7	88.3	0.0	-2.36	0.83	0.24	0.67	4.86	848	124	2	0	0	0	0	logfile
✔	9MR7	48554	2025-09-17	2025-01-07	3.56	4.58	3.62	3.7	0.003	0.67	0.0	0.05	12.26	0.01	2.240	3.62	0.22	4.1	95.9	0.0	-0.83	0.79	0.76	2.52	3.7	0.004	0.62	0.0	0.04	14.07	0.00	2.506	5.89	1.41	4.7	95.3	0.0	-0.15	1.69	0.86	0.83	2.24	12463	1605	12	0	0	0	0	logfile
✔	9LDR	63006	2025-09-17	2025-01-06	3.58	3.81	3.54	3.8	0.007	0.84	0.0	0.04	15.48	0.00	2.184	14.85	1.77	8.7	91.3	0.0	-2.99	0.65	0.83	1.44	3.8	0.003	0.67	0.0	0.04	16.55	0.00	2.520	8.07	2.66	5.4	94.6	0.0	0.54	0.98	0.63	0.78	0.54	7274	935	3	0	0	0	0	logfile
✔	9MQS	48538	2025-09-17	2025-01-06	3.1	3.38	3.07	3.3	0.009	1.12	0.0	0.09	28.91	0.01	2.080	48.08	0.00	0.0	0.0	0.0	—	0.62	0.66	—	3.4	0.007	0.95	0.0	0.05	24.84	0.01	2.070	19.44	0.00	0.0	0.0	0.0	—	1.13	0.66	0.73	—	5207	0	2	243	9	1	0	logfile
✔	9MQY	48544	2025-09-17	2025-01-06	3.0	3.64	3.04	3.5	0.007	0.75	0.0	0.05	12.52	0.01	2.375	0.55	0.67	2.6	97.4	0.0	-1.16	0.76	0.87	6.11	3.5	0.002	0.55	0.0	0.04	13.58	0.00	2.490	3.46	1.33	1.3	98.7	0.0	1.39	1.34	0.73	0.86	5.07	6448	894	4	0	2	0	0	logfile
✔	9LCR	62991	2025-09-18	2025-01-05	2.6	2.84	2.72	2.8	0.009	1.38	0.0	0.17	26.42	0.00	1.972	3.98	0.00	0.0	0.0	0.0	—	0.73	0.75	—	2.8	0.005	0.72	0.0	0.04	24.76	0.01	1.924	5.18	0.00	0.0	0.0	0.0	—	1.29	0.78	0.86	—	15550	0	4	724	28	0	0	logfile
✔	9LBS	62955	2025-09-17	2025-01-03	3.41	2.53	3.40	2.2	0.004	0.77	0.0	0.05	17.05	0.01	2.215	8.06	0.69	12.1	87.5	0.5	-3.57	0.68	0.70	1.51	2.2	0.004	0.70	0.0	0.04	17.12	0.00	2.493	8.21	3.74	12.1	87.8	0.1	-3.15	0.31	0.69	0.73	1.32	6730	867	8	0	3	0	0	logfile
✔	9MQG	48523	2025-09-19	2025-01-03	3.3	3.56	3.32	3.5	0.005	1.01	0.0	0.06	10.74	0.01	2.139	0.86	0.04	2.3	97.7	0.0	1.15	0.75	0.84	3.68	3.5	0.003	0.63	0.0	0.04	13.75	0.00	2.372	6.91	2.53	2.9	97.1	0.0	0.48	3.22	0.75	0.84	2.98	21337	2618	31	0	68	0	0	logfile
✔	9MQH	48524	2025-09-17	2025-01-03	3.9	4.08	3.69	4.0	0.003	0.59	0.0	0.04	15.16	0.00	2.206	4.68	3.92	3.2	96.8	0.0	1.41	0.55	0.80	1.35	4.0	0.003	0.56	0.0	0.04	15.91	0.00	2.642	5.18	5.39	2.9	97.1	0.0	2.22	0.38	0.55	0.79	0.99	2074	281	1	0	0	0	0	logfile
✔	9HVW	52444	2025-09-17	2025-01-02	3.1	3.42	3.15	3.4	0.004	0.82	0.0	0.05	16.16	0.01	2.573	6.17	1.53	4.7	95.3	0.0	-2.70	0.56	0.61	0.92	3.4	0.003	0.59	0.0	0.04	17.03	0.00	2.533	10.38	4.21	4.6	95.4	0.0	-1.48	1.12	0.65	0.75	2.12	8950	1149	8	0	0	0	0	logfile
✔	9LAE	62925	2025-09-17	2025-01-02	3.46	3.62	3.40	3.6	0.006	0.75	0.0	0.05	13.67	0.00	2.120	8.61	0.00	8.0	91.8	0.2	-3.66	0.52	0.71	3.84	3.6	0.005	0.70	0.0	0.05	16.48	0.00	2.526	9.95	3.47	8.0	92.0	0.0	-1.81	0.43	0.72	0.88	3.51	5000	645	6	0	1	0	0	logfile
✔	9MQ6	48514	2025-09-17	2025-01-02	3.3	3.80	3.20	3.6	0.003	0.47	0.0	0.04	10.60	0.00	2.234	4.50	0.48	4.9	95.1	0.0	0.81	0.62	0.88	1.91	3.6	0.003	0.64	0.0	0.04	14.39	0.00	2.439	5.16	1.43	5.4	94.6	0.0	1.32	1.05	0.62	0.89	1.54	9917	1252	5	0	4	0	0	logfile
✔	9LA0	62915	2025-09-19	2025-01-01	3.1	3.51	3.33	3.5	0.006	0.85	0.0	0.05	16.52	0.01	2.132	21.07	3.43	3.5	96.5	0.0	0.02	0.60	0.82	1.78	3.5	0.007	0.80	0.0	0.05	17.19	0.00	2.515	16.36	4.44	4.2	95.8	0.0	0.48	0.75	0.60	0.83	1.77	21944	2704	4	0	0	0	0	logfile
✔	9LA1	62916	2025-09-19	2025-01-01	3.15	3.60	3.43	3.5	0.006	0.86	0.0	0.05	16.12	0.01	2.201	21.48	3.10	4.5	95.5	0.0	-0.19	0.64	0.83	1.77	3.5	0.005	0.73	0.0	0.04	16.79	0.00	2.454	14.15	3.14	3.4	96.6	0.0	1.15	1.08	0.64	0.85	1.66	21940	2703	4	0	0	0	0	logfile
✔	9LA2	62917	2025-09-19	2025-01-01	3.2	3.66	3.52	3.6	0.006	0.86	0.0	0.05	16.86	0.01	2.205	23.42	2.98	4.1	95.9	0.0	-0.56	0.62	0.82	1.70	3.6	0.003	0.69	0.0	0.04	17.39	0.00	2.504	14.67	3.65	4.3	95.7	0.0	0.64	1.55	0.64	0.83	1.68	21917	2701	4	0	0	0	0	logfile
✔	9LA3	62918	2025-09-19	2025-01-01	3.19	3.63	3.49	3.5	0.005	0.81	0.0	0.05	16.47	0.01	2.215	23.14	3.27	3.5	96.5	0.0	-0.39	0.64	0.83	1.36	3.5	0.004	0.70	0.0	0.04	17.11	0.00	2.440	15.11	4.19	3.6	96.4	0.0	0.64	1.05	0.63	0.84	1.51	21944	2704	4	0	0	0	0	logfile
✔	9LA7	62921	2025-09-17	2025-01-01	2.39	2.73	2.56	2.8	0.005	0.75	0.0	0.05	17.57	0.01	2.227	9.51	3.74	2.6	97.4	0.0	1.11	0.60	0.86	3.25	2.8	0.003	0.55	0.0	0.04	17.86	0.00	2.364	6.71	3.83	3.0	97.0	0.0	2.46	0.90	0.55	0.84	3.26	10340	1220	4	0	0	0	0	logfile
✔	9MPW	48507	2025-09-17	2024-12-31	3.37	4.15	3.54	3.8	0.005	0.79	0.0	0.05	13.37	0.01	2.554	2.31	0.00	3.9	96.1	0.0	-1.52	0.68	0.84	3.37	3.8	0.003	0.68	0.0	0.04	14.98	0.01	2.405	7.89	1.28	2.9	97.1	0.0	0.61	1.37	0.65	0.85	2.58	6336	818	6	0	7	0	0	logfile
✔	9L9U	62913	2025-09-19	2024-12-31	3.12	3.59	3.44	3.5	0.005	0.86	0.0	0.05	16.56	0.01	2.200	23.96	2.74	3.7	96.3	0.0	-0.34	0.62	0.82	1.53	3.5	0.007	0.79	0.0	0.05	17.35	0.00	2.400	17.58	3.92	3.8	96.2	0.0	0.52	1.41	0.63	0.85	1.51	21836	2692	4	0	0	0	0	logfile
✔	9L9P	62912	2025-09-17	2024-12-30	4.3	4.10	3.70	4.0	0.010	1.11	0.0	0.05	16.92	0.00	2.218	10.15	0.37	10.1	88.7	1.2	-1.91	0.42	0.71	—	4.0	0.009	0.92	0.0	0.05	14.25	0.00	2.501	10.10	0.00	12.0	87.3	0.7	-1.91	0.67	0.44	0.80	—	9999	1274	6	0	1	0	0	logfile

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