Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9MN6	48414	2025-09-17	2024-12-20	2.71	2.22	2.72	1.9	0.005	0.91	0.0	0.06	17.86	0.01	2.016	6.33	0.17	3.0	97.0	0.0	-0.90	0.63	0.54	2.80	1.9	0.004	0.67	0.0	0.04	19.53	0.01	1.936	11.03	2.27	3.3	96.7	0.0	1.02	0.43	0.77	0.76	2.81	11855	1306	6	66	2	0	0	logfile
✔	9MN7	48415	2025-09-17	2024-12-20	2.65	2.18	2.68	2.1	0.005	0.93	0.0	0.05	17.44	0.01	2.236	4.90	0.00	4.7	95.3	0.0	-1.29	0.61	0.52	3.09	1.7	0.004	0.65	0.0	0.04	18.80	0.01	2.165	9.36	1.85	3.9	96.1	0.0	0.44	0.83	0.75	0.75	2.56	11788	1298	6	66	2	0	0	logfile
✔	9L3W	62793	2025-09-17	2024-12-19	3.5	2.25	—	1.6	0.002	0.51	0.0	0.04	12.79	0.00	2.121	6.73	0.00	3.0	97.0	0.0	0.72	0.71	0.73	2.13	1.6	0.003	0.58	0.0	0.04	15.46	0.00	2.572	6.31	3.16	4.1	95.9	0.0	0.54	0.43	0.73	0.76	2.34	7262	983	5	0	0	0	0	logfile
✔	9L44	62805	2025-09-17	2024-12-19	3.02	3.21	3.05	3.2	0.011	1.20	11.0	0.08	11.45	0.01	1.777	2.60	0.15	6.6	93.4	0.0	-1.65	0.80	0.88	4.33	3.2	0.003	0.60	0.0	0.05	13.29	0.00	2.182	2.04	1.58	3.2	96.8	0.0	-0.33	1.68	0.82	0.90	3.91	12124	1548	8	0	20	0	0	logfile
✔	9MLK	48374	2025-09-17	2024-12-19	2.84	3.48	2.86	3.3	0.003	0.54	0.0	0.04	12.97	0.00	2.221	7.57	0.00	3.2	96.8	0.0	0.66	0.76	0.85	4.17	3.3	0.006	0.75	0.0	0.04	17.33	0.00	2.408	9.10	2.20	4.8	95.2	0.0	1.07	0.51	0.76	0.86	3.82	7335	929	9	0	0	0	0	logfile
✔	9L3Y	62798	2025-09-17	2024-12-19	3.6	2.31	—	1.7	0.002	0.57	0.0	0.04	12.95	0.00	2.172	8.54	0.00	7.3	92.6	0.1	0.06	0.72	0.70	1.85	1.7	0.003	0.64	0.0	0.04	15.76	0.00	2.583	7.21	3.28	7.8	92.1	0.1	-0.33	1.15	0.73	0.73	2.38	7383	993	5	0	0	0	0	logfile
✔	9L3Z	62799	2025-09-17	2024-12-19	3.9	2.91	3.66	4.0	0.003	0.54	0.0	0.04	14.17	0.00	1.337	6.84	0.21	6.1	93.9	0.0	-0.34	0.69	0.71	1.68	4.0	0.003	0.67	0.0	0.04	15.71	0.00	2.534	7.97	4.65	6.4	93.6	0.0	0.44	1.23	0.71	0.74	1.87	5147	733	5	0	1	0	0	logfile
✔	9MLA	48351	2025-09-18	2024-12-18	2.24	2.97	2.35	2.8	0.003	0.57	0.0	0.04	14.18	0.00	2.112	3.39	0.00	3.6	96.4	0.0	0.19	0.87	0.88	4.97	2.7	0.004	0.78	1.0	0.05	14.32	0.00	2.129	4.26	1.79	3.2	96.7	0.0	0.74	0.45	0.83	0.87	4.50	18633	2223	42	0	75	0	0	logfile
✔	9MKo	48332	2025-09-18	2024-12-17	3.21	3.92	3.35	3.7	0.007	0.73	0.0	0.04	18.73	0.03	2.158	7.50	0.51	1.6	98.4	0.0	-1.02	0.83	0.86	1.87	3.7	0.003	0.63	0.0	0.04	16.44	0.00	2.361	7.00	2.78	1.3	98.6	0.0	3.05	2.32	0.79	0.84	0.96	19575	2460	26	0	30	0	0	logfile
✔	9L2E	62773	2025-09-17	2024-12-17	2.46	2.57	2.45	2.6	0.003	0.58	0.0	0.04	20.56	0.00	2.047	14.23	1.81	2.2	97.8	0.0	1.27	0.64	0.78	2.26	2.6	0.003	0.53	0.0	0.04	20.55	0.00	2.517	9.34	2.72	2.0	98.0	0.0	2.16	0.87	0.66	0.80	2.53	9064	1112	8	0	0	0	0	logfile
✔	9MK9	48323	2025-09-17	2024-12-16	3.22	3.42	3.26	3.4	0.005	0.73	0.0	0.04	16.38	0.00	2.201	6.92	2.34	3.7	96.3	0.0	0.35	0.76	0.84	1.54	3.5	0.003	0.60	0.0	0.04	17.91	0.00	2.506	5.95	1.37	3.7	96.3	0.0	1.81	0.66	0.75	0.85	1.07	6751	822	2	0	0	0	0	logfile
✔	9L1S	62753	2025-09-17	2024-12-15	3.0	3.20	3.21	3.2	0.003	0.66	0.0	0.04	14.05	0.01	1.945	9.32	0.24	6.6	93.4	0.0	-2.12	0.71	0.75	2.11	3.2	0.004	0.76	0.0	0.05	16.66	0.00	2.426	8.72	2.71	8.1	91.9	0.0	-1.40	0.59	0.73	0.79	2.39	7584	989	3	0	0	0	0	logfile
✔	9MJ5	48312	2025-09-17	2024-12-13	3.5	4.13	—	3.9	0.005	0.70	0.0	0.04	19.13	0.00	1.915	5.91	0.73	3.8	96.1	0.1	0.76	0.83	0.83	1.75	3.9	0.003	0.61	0.0	0.04	19.60	0.00	1.921	5.78	3.24	4.0	95.9	0.1	0.77	0.34	0.83	0.82	1.55	11919	1378	8	42	3	0	0	logfile
✔	9HPK	52332	2025-09-18	2024-12-13	2.59	3.29	2.82	3.2	0.004	0.59	3.0	0.04	13.56	0.00	2.221	5.51	0.00	2.0	98.0	0.0	1.44	0.69	0.84	3.71	3.2	0.003	0.51	0.0	0.04	15.28	0.00	2.515	5.26	1.45	1.2	98.8	0.0	2.17	0.89	0.50	0.77	3.13	17705	2257	16	0	0	36	0	logfile
✔	9MiP	48300	2025-09-17	2024-12-13	3.4	4.37	3.51	3.9	0.010	1.19	0.0	0.08	14.15	0.00	1.847	4.88	0.00	1.9	98.1	0.0	0.60	0.89	0.83	0.69	3.9	0.003	0.71	0.0	0.04	15.27	0.00	2.058	9.66	1.79	2.1	97.9	0.0	1.67	0.63	0.90	0.85	0.69	10549	1312	4	0	2	0	0	logfile
✔	9MiA	48286	2025-09-19	2024-12-12	2.8	3.01	2.82	3.0	0.005	1.02	0.0	0.06	15.37	0.01	2.017	5.30	0.15	3.9	96.1	0.0	-0.45	0.69	0.83	4.09	3.0	0.003	0.64	0.0	0.04	15.66	0.00	2.549	5.49	1.78	2.1	97.7	0.2	0.09	0.38	0.66	0.82	3.97	24657	3069	30	0	60	0	0	logfile
✔	9HPG	52329	2025-09-17	2024-12-12	3.35	3.81	3.38	3.7	0.002	0.42	0.0	0.04	14.53	0.00	2.190	2.92	0.00	2.0	98.0	0.0	-0.54	0.75	0.85	3.43	3.7	0.004	0.48	0.0	0.04	16.27	0.00	2.625	2.78	1.09	3.4	96.6	0.0	0.03	0.29	0.73	0.87	2.93	6947	874	2	0	0	0	0	logfile
✔	9Mi0	48283	2025-09-19	2024-12-12	2.8	2.98	2.79	3.0	0.010	1.16	0.0	0.05	17.44	0.02	2.029	3.19	0.00	1.6	98.4	0.0	-0.96	0.69	0.82	3.40	3.0	0.004	0.69	0.0	0.05	15.80	0.00	2.381	7.86	2.11	2.2	97.8	0.0	-0.20	0.46	0.70	0.84	3.74	25002	3099	39	0	60	0	0	logfile
✔	9L0E	62698	2025-09-17	2024-12-12	3.6	3.53	3.31	3.5	0.003	0.69	0.0	0.05	15.97	0.00	2.212	5.79	0.70	5.2	94.8	0.0	-0.68	0.70	0.82	2.86	3.4	0.006	0.69	0.0	0.05	16.70	0.01	2.416	4.91	3.44	7.4	92.6	0.0	0.01	1.52	0.73	0.91	3.37	12096	1512	12	0	0	0	0	logfile
✔	9L0F	62699	2025-09-17	2024-12-12	4.1	4.77	3.60	4.0	0.004	0.61	0.0	0.05	15.82	0.00	2.336	5.68	0.36	6.1	93.6	0.3	-0.84	0.65	0.72	—	4.1	0.004	0.61	0.0	0.05	13.15	0.00	2.563	8.37	0.00	5.9	93.9	0.2	-1.13	1.47	0.72	0.91	—	9954	1302	6	0	0	0	0	logfile

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