Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9Mi0	48283	2025-09-19	2024-12-12	2.8	2.98	2.79	3.0	0.010	1.16	0.0	0.05	17.44	0.02	2.029	3.19	0.00	1.6	98.4	0.0	-0.96	0.69	0.82	3.40	3.0	0.004	0.69	0.0	0.05	15.80	0.00	2.381	7.86	2.11	2.2	97.8	0.0	-0.20	0.46	0.70	0.84	3.74	25002	3099	39	0	60	0	0	logfile
✔	9HPG	52329	2025-09-17	2024-12-12	3.35	3.81	3.38	3.7	0.002	0.42	0.0	0.04	14.53	0.00	2.190	2.92	0.00	2.0	98.0	0.0	-0.54	0.75	0.85	3.43	3.7	0.004	0.48	0.0	0.04	16.27	0.00	2.625	2.78	1.09	3.4	96.6	0.0	0.03	0.29	0.73	0.87	2.93	6947	874	2	0	0	0	0	logfile
✔	9L0F	62699	2025-09-17	2024-12-12	4.1	4.77	3.60	4.0	0.004	0.61	0.0	0.05	15.82	0.00	2.336	5.68	0.36	6.1	93.6	0.3	-0.84	0.65	0.72	—	4.1	0.004	0.61	0.0	0.05	13.15	0.00	2.563	8.37	0.00	5.9	93.9	0.2	-1.13	1.47	0.72	0.91	—	9954	1302	6	0	0	0	0	logfile
✔	9MiA	48286	2025-09-19	2024-12-12	2.8	3.01	2.82	3.0	0.005	1.02	0.0	0.06	15.37	0.01	2.017	5.30	0.15	3.9	96.1	0.0	-0.45	0.69	0.83	4.09	3.0	0.003	0.64	0.0	0.04	15.66	0.00	2.549	5.49	1.78	2.1	97.7	0.2	0.09	0.38	0.66	0.82	3.97	24657	3069	30	0	60	0	0	logfile
✔	9MHH	48278	2025-09-17	2024-12-11	4.5	3.44	—	2.3	0.007	0.80	0.0	0.17	10.15	0.00	1.401	0.42	0.00	2.4	97.5	0.1	0.48	0.74	0.58	—	2.2	0.006	1.03	0.0	0.16	9.18	0.01	1.681	3.03	0.00	14.3	85.3	0.3	-1.91	1.33	0.72	0.61	—	11243	2794	7	0	4	0	0	logfile
✔	9MHD	48274	2025-09-17	2024-12-11	2.92	3.33	3.08	3.3	0.003	0.50	0.0	0.04	25.77	0.00	2.045	4.37	4.36	2.3	97.7	0.0	1.67	0.63	0.82	3.41	3.3	0.004	0.55	0.0	0.04	18.75	0.00	1.935	2.71	2.87	2.4	97.6	0.0	1.65	1.70	0.55	0.77	3.31	8923	1068	9	0	7	6	0	logfile
✔	9KZT	62668	2025-09-19	2024-12-11	3.79	4.10	3.83	3.8	0.003	0.57	0.0	0.04	13.96	0.00	2.065	18.60	0.00	5.5	94.5	0.0	-1.72	0.66	0.42	1.08	3.8	0.005	0.68	0.0	0.04	15.83	0.00	2.389	15.88	2.00	5.9	94.1	0.0	-1.80	0.50	0.67	0.47	1.11	23526	2979	6	0	0	0	0	logfile
✔	9HNP	52311	2025-09-17	2024-12-11	2.53	2.08	2.55	1.9	0.014	1.86	0.0	0.11	13.61	0.04	2.429	4.73	0.34	0.8	99.2	0.0	-0.45	0.77	0.78	5.12	1.9	0.003	0.58	0.0	0.04	14.23	0.01	2.509	4.48	1.53	1.2	98.8	0.0	2.03	0.72	0.78	0.80	3.45	11864	766	4	0	4	0	5940	logfile
✔	9MGK	48261	2025-09-17	2024-12-11	4.3	4.09	4.18	4.2	0.003	0.72	0.0	0.05	13.59	0.00	2.175	14.11	0.00	6.8	93.2	0.0	0.85	0.51	0.73	—	4.2	0.003	0.72	0.0	0.04	13.47	0.00	2.569	9.69	0.00	6.0	94.0	0.0	1.27	1.30	0.51	0.71	—	4135	528	2	0	2	0	0	logfile
✔	9MFU	48237	2025-09-17	2024-12-10	2.87	2.58	2.40	2.4	0.042	4.25	42.0	0.20	21.84	0.01	2.598	11.90	13.51	23.3	76.7	0.0	-3.12	0.69	0.91	5.53	2.2	0.124	3.60	45.0	0.24	24.98	0.02	2.217	5.01	7.92	26.4	73.3	0.2	-6.58	0.83	0.70	0.94	5.28	6776	616	98	0	98	0	0	logfile
✔	9KZJ	62664	2025-09-19	2024-12-10	3.5	4.05	3.04	3.6	0.003	0.66	0.0	0.04	15.23	0.00	2.133	6.04	1.10	3.5	95.8	0.7	-1.38	0.50	0.82	2.61	3.6	0.004	0.67	0.0	0.04	15.82	0.00	2.101	4.54	2.58	3.7	96.0	0.3	-0.98	2.80	0.50	0.90	2.72	24095	3145	14	0	0	0	0	logfile
✔	9KZC	62659	2025-09-17	2024-12-10	2.78	2.97	35.16	3.0	0.002	0.48	0.0	0.04	13.42	0.00	2.232	6.54	0.00	2.4	97.6	0.0	-0.91	0.70	0.85	3.76	3.0	0.003	0.54	0.0	0.04	15.92	0.00	2.249	5.89	2.26	2.6	97.4	0.0	-0.99	0.28	0.72	0.88	3.22	7846	993	5	0	4	0	0	logfile
✔	9MGA	48244	2025-09-17	2024-12-10	2.85	2.34	2.53	2.1	0.035	3.30	0.0	0.09	18.89	0.02	2.556	9.19	5.88	14.3	85.7	0.0	-5.15	0.62	0.81	5.89	1.9	0.154	4.68	32.0	0.29	22.90	0.04	1.916	12.57	10.36	22.1	77.2	0.7	-5.81	1.34	0.69	0.91	4.64	4599	420	63	0	63	0	0	logfile
✔	9KYM	62647	2025-09-18	2024-12-09	3.93	4.08	3.94	4.1	0.003	0.61	0.0	0.04	18.39	0.00	1.986	7.07	0.12	6.6	93.4	0.0	-0.47	0.64	0.82	0.61	4.1	0.003	0.58	0.0	0.04	18.26	0.00	2.381	5.93	2.13	7.4	92.6	0.0	-0.17	0.40	0.65	0.83	1.00	15849	998	4	0	0	0	8012	logfile
✔	9MF5	48224	2025-09-17	2024-12-09	3.2	4.14	3.33	3.8	0.008	1.09	0.0	0.07	15.15	0.00	1.942	3.59	0.00	1.8	98.2	0.0	0.55	0.88	0.82	1.51	3.8	0.003	0.65	0.0	0.04	16.67	0.00	2.160	8.49	1.63	1.6	98.4	0.0	1.73	1.18	0.89	0.84	1.22	9993	1244	4	0	2	0	0	logfile
✔	9KY5	62640	2025-09-17	2024-12-08	3.6	4.04	3.69	4.0	0.005	0.71	0.0	0.04	14.69	0.00	2.204	15.18	1.27	7.0	93.0	0.0	-3.42	0.57	0.80	1.78	4.0	0.003	0.70	0.0	0.04	16.56	0.00	2.462	9.64	2.79	5.8	94.2	0.0	0.08	0.97	0.53	0.77	1.28	7277	935	3	0	0	0	0	logfile
✔	9HM9	52289	2025-09-18	2024-12-07	3.4	4.51	3.41	3.5	0.003	0.73	0.0	0.05	13.19	0.01	2.003	4.42	0.00	3.7	96.3	0.0	-1.83	0.76	0.85	3.47	3.5	0.005	0.74	0.0	0.04	14.02	0.00	1.951	7.08	0.32	2.8	97.2	0.0	1.22	1.18	0.78	0.90	2.50	14798	1876	11	0	10	0	0	logfile
✔	9MEK	48216	2025-09-17	2024-12-06	2.85	3.15	2.88	3.1	0.003	0.53	0.0	0.03	14.27	0.00	2.306	6.84	1.68	2.1	97.9	0.0	3.48	0.58	0.84	2.28	3.1	0.003	0.55	0.0	0.04	14.13	0.00	2.552	5.06	2.23	3.2	96.8	0.0	3.66	0.30	0.63	0.86	1.73	3594	478	4	0	6	0	0	logfile
✔	9MEL	48217	2025-09-17	2024-12-06	3.17	3.39	3.13	3.4	0.004	0.73	0.0	0.05	20.72	0.00	2.206	5.79	1.72	3.9	96.1	0.0	3.40	0.56	0.82	1.52	3.4	0.004	0.60	0.0	0.04	15.56	0.00	2.558	5.79	1.72	4.3	95.7	0.0	3.79	0.26	0.57	0.83	1.58	3589	476	4	0	4	0	0	logfile
✔	9KWC	62607	2025-09-18	2024-12-05	2.9	3.22	3.03	3.2	0.009	1.51	6.0	0.10	26.63	0.01	1.061	37.33	44.05	16.4	80.0	3.7	-5.01	0.58	0.60	1.44	3.2	0.004	0.88	0.0	0.05	20.71	0.00	2.356	16.11	3.90	10.2	89.0	0.7	-2.06	1.34	0.65	0.70	1.51	9614	1121	2	25	0	0	0	logfile

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