Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9MDi	48171	2025-09-17	2024-12-05	3.56	3.84	3.60	3.9	0.004	0.81	0.0	0.05	18.39	0.01	2.248	4.80	0.76	7.5	92.5	0.0	-2.59	0.72	0.79	2.33	3.8	0.004	0.63	0.0	0.05	18.41	0.00	1.794	6.49	4.01	8.7	91.3	0.0	-1.78	0.92	0.70	0.79	2.28	8139	1043	4	0	6	0	0	logfile
✔	9MDR	48178	2025-09-18	2024-12-05	3.33	3.58	3.35	3.6	0.003	0.64	0.0	0.05	18.00	0.00	2.322	6.77	0.39	5.2	94.8	0.0	-1.58	0.72	0.86	2.31	3.6	0.003	0.70	0.0	0.04	18.08	0.00	2.140	5.37	2.38	6.2	93.8	0.0	-0.89	0.89	0.73	0.86	1.89	18389	2352	14	0	14	0	0	logfile
✔	9KWC	62607	2025-09-18	2024-12-05	2.9	3.22	3.03	3.2	0.009	1.51	6.0	0.10	26.63	0.01	1.061	37.33	44.05	16.4	80.0	3.7	-5.01	0.58	0.60	1.44	3.2	0.004	0.88	0.0	0.05	20.71	0.00	2.356	16.11	3.90	10.2	89.0	0.7	-2.06	1.34	0.65	0.70	1.51	9614	1121	2	25	0	0	0	logfile
✔	9HLW	52273	2025-09-18	2024-12-05	2.66	3.39	2.70	3.2	0.004	0.72	0.0	0.05	17.57	0.00	1.993	12.06	1.29	3.9	96.1	0.0	0.18	0.86	0.85	3.39	3.2	0.005	0.72	0.0	0.05	14.18	0.00	1.957	9.51	1.51	3.6	96.4	0.0	0.13	0.33	0.83	0.82	3.57	13375	1632	12	0	35	0	0	logfile
✔	9MDL	48173	2025-09-18	2024-12-05	4.19	4.42	4.21	4.3	0.003	0.77	0.0	0.05	14.40	0.00	2.243	5.30	0.14	9.2	90.8	0.0	-2.10	0.71	0.68	—	4.3	0.002	0.60	0.0	0.04	14.38	0.00	1.814	7.09	0.07	8.0	92.0	0.0	-1.88	0.98	0.71	0.68	—	12237	1569	6	0	9	0	0	logfile
✔	9KWi	62611	2025-09-17	2024-12-05	3.19	3.45	3.24	3.4	0.003	0.52	0.0	0.04	16.98	0.00	1.952	8.06	2.94	3.0	96.9	0.2	1.98	0.69	0.86	2.15	3.4	0.002	0.51	0.0	0.04	17.35	0.00	1.984	6.26	2.94	3.3	96.6	0.1	2.33	0.92	0.70	0.87	1.85	9127	1190	4	0	4	0	0	logfile
✔	9ELY	48162	2025-09-17	2024-12-05	2.9	3.17	2.91	3.1	0.003	0.70	0.0	0.06	21.92	0.01	2.339	0.15	0.00	0.0	0.0	0.0	—	0.62	0.82	—	3.1	0.007	0.83	0.0	0.05	21.99	0.01	2.524	3.07	0.00	0.0	0.0	0.0	—	0.96	0.67	0.90	—	4334	0	1	202	0	0	0	logfile
✔	9KWB	62606	2025-09-18	2024-12-05	2.6	2.91	2.77	2.9	0.010	1.44	5.0	0.10	25.39	0.01	2.371	7.07	35.76	10.7	87.4	1.9	-3.80	0.53	0.69	3.44	2.9	0.004	0.67	0.0	0.04	20.36	0.00	2.538	9.09	3.35	7.2	92.6	0.2	-0.47	1.07	0.66	0.83	3.27	10514	1209	3	34	0	0	0	logfile
✔	9ELi	48150	2025-09-19	2024-12-04	2.82	3.02	2.91	3.1	0.019	1.30	3.0	0.06	13.85	0.01	2.066	2.18	0.00	3.3	96.7	0.0	0.03	0.68	0.86	3.16	3.0	0.003	0.63	0.0	0.04	14.63	0.00	2.450	5.48	1.80	2.6	97.2	0.2	0.11	0.45	0.71	0.84	3.15	25509	3153	21	0	57	0	0	logfile
✔	9ELG	48148	2025-09-17	2024-12-04	3.71	3.92	3.68	3.9	0.008	1.33	3.0	0.09	13.82	0.02	2.006	2.64	0.00	3.8	96.2	0.0	0.30	0.63	0.77	3.66	3.9	0.004	0.69	0.0	0.05	13.39	0.00	2.508	7.43	2.86	4.6	95.4	0.0	-0.82	0.56	0.65	0.79	2.94	4255	510	5	0	11	0	0	logfile
✔	9KUS	62579	2025-09-17	2024-12-04	3.42	3.70	3.45	3.8	0.003	0.60	0.0	0.04	15.11	0.01	2.305	4.44	0.33	2.0	98.0	0.0	0.84	0.67	0.81	2.58	3.8	0.002	0.58	0.0	0.04	15.94	0.00	2.409	4.35	1.17	1.9	98.1	0.0	2.30	0.84	0.59	0.78	2.03	5488	710	2	0	0	0	0	logfile
✔	9ELN	48156	2025-09-19	2024-12-04	2.93	3.18	3.03	3.2	0.012	1.41	4.0	0.07	14.55	0.01	1.539	6.02	0.25	4.2	95.7	0.0	0.54	0.68	0.84	3.22	3.2	0.006	0.98	2.0	0.05	14.83	0.00	2.133	8.03	2.69	3.7	96.2	0.1	0.29	0.96	0.70	0.87	3.00	25446	3150	20	0	56	0	0	logfile
✔	9ELK	48152	2025-09-19	2024-12-04	2.82	3.06	2.96	3.1	0.007	1.21	0.0	0.07	14.59	0.01	1.697	4.17	0.00	2.7	97.3	0.0	0.59	0.67	0.85	3.59	3.1	0.003	0.61	0.0	0.04	14.47	0.00	2.464	5.07	1.89	2.9	97.1	0.0	0.60	0.87	0.66	0.86	3.14	25299	3123	21	0	57	0	0	logfile
✔	9ELM	48155	2025-09-19	2024-12-04	2.68	2.91	2.78	2.9	0.011	1.44	0.0	0.07	14.72	0.01	2.205	4.09	0.00	2.1	97.9	0.0	0.56	0.62	0.84	3.98	2.9	0.004	0.66	0.0	0.05	14.38	0.00	2.445	5.41	2.00	2.6	97.3	0.1	0.38	0.46	0.62	0.85	3.80	25275	3117	21	0	57	0	0	logfile
✔	9ELP	48158	2025-09-19	2024-12-04	2.94	3.17	3.10	3.2	0.008	1.23	2.0	0.07	14.38	0.01	1.127	2.69	0.16	3.3	96.7	0.0	0.61	0.66	0.84	3.60	3.2	0.006	0.71	0.0	0.05	14.38	0.00	2.484	5.79	1.76	4.4	95.6	0.1	0.11	0.52	0.65	0.86	3.45	23543	2916	21	0	54	0	0	logfile
✔	9ELL	48153	2025-09-19	2024-12-04	2.93	3.19	3.04	3.2	0.008	1.21	0.0	0.07	15.40	0.01	1.798	5.83	0.14	3.6	96.4	0.0	0.45	0.69	0.86	3.44	3.2	0.004	0.68	0.0	0.05	14.68	0.00	2.464	6.32	1.99	4.6	95.4	0.0	0.30	0.49	0.68	0.87	3.25	25567	3157	21	0	59	0	0	logfile
✔	9ELJ	48151	2025-09-19	2024-12-04	2.92	3.19	3.06	3.2	0.007	1.11	0.0	0.06	14.94	0.01	1.501	3.55	0.00	3.6	96.4	0.0	0.60	0.68	0.85	3.71	3.2	0.003	0.68	0.0	0.05	14.51	0.00	2.326	6.29	2.21	3.9	96.1	0.0	0.25	0.48	0.69	0.86	3.27	25558	3159	20	0	57	0	0	logfile
✔	9ELH	48149	2025-09-19	2024-12-04	2.98	3.23	3.07	3.2	0.008	1.23	0.0	0.06	14.91	0.01	1.909	5.30	0.04	3.6	96.4	0.0	0.59	0.69	0.86	3.76	3.2	0.004	0.70	0.0	0.05	14.60	0.00	2.327	5.52	2.32	3.7	96.3	0.1	0.22	0.47	0.66	0.86	3.48	25512	3152	20	0	59	0	0	logfile
✔	9ELE	48146	2025-09-17	2024-12-04	3.16	3.42	3.20	3.4	0.006	1.27	0.0	0.06	13.42	0.01	1.965	2.83	0.00	1.0	99.0	0.0	0.59	0.68	0.85	4.29	3.4	0.003	0.59	0.0	0.04	14.51	0.00	2.529	5.58	3.06	1.3	98.7	0.0	1.18	0.48	0.65	0.86	3.82	6529	780	8	0	13	0	0	logfile
✔	9ELo	48157	2025-09-19	2024-12-04	2.74	2.96	2.82	3.0	0.008	1.31	3.0	0.07	13.70	0.02	1.564	5.75	0.11	2.9	97.1	0.0	0.80	0.62	0.83	4.00	3.0	0.003	0.63	0.0	0.04	14.44	0.00	2.432	5.83	1.63	3.0	97.0	0.0	0.49	1.15	0.62	0.84	3.41	25446	3150	21	0	54	0	0	logfile

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