Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9EKU	48137	2025-09-18	2024-12-03	2.68	3.50	2.93	3.3	0.006	0.99	4.0	0.05	17.58	0.01	2.219	9.64	0.52	3.1	96.9	0.0	0.13	0.66	0.86	2.39	3.3	0.003	0.65	0.0	0.04	16.98	0.00	2.510	6.18	1.70	2.4	97.6	0.0	1.56	0.95	0.61	0.84	2.74	13956	1732	8	0	4	0	0	logfile
✔	9EKT	48136	2025-09-18	2024-12-03	2.35	2.76	2.56	2.7	0.003	0.58	0.0	0.04	16.23	0.00	2.170	6.46	0.64	3.7	96.3	0.0	1.61	0.66	0.86	2.98	2.7	0.003	0.55	0.0	0.04	17.20	0.00	2.471	4.12	2.19	3.5	96.5	0.0	2.02	0.94	0.61	0.86	3.20	14052	1756	4	0	0	0	0	logfile
✔	9EKY	48141	2025-09-18	2024-12-03	2.67	3.03	2.74	2.9	0.008	1.02	8.0	0.06	14.89	0.01	2.180	8.97	0.72	3.3	96.7	0.0	0.95	0.64	0.83	3.74	2.9	0.003	0.54	0.0	0.04	15.98	0.00	2.156	5.24	2.15	2.1	97.9	0.0	3.06	1.42	0.63	0.82	2.96	15216	1836	8	0	4	0	0	logfile
✔	9EKZ	48142	2025-09-18	2024-12-03	2.61	2.97	2.72	2.9	0.008	0.94	9.0	0.06	16.50	0.01	2.309	7.55	0.95	1.8	98.2	0.0	1.33	0.61	0.81	3.70	2.9	0.003	0.54	0.0	0.04	16.19	0.00	2.499	5.96	2.49	1.8	98.2	0.0	2.89	1.02	0.63	0.82	2.81	15312	1844	8	0	4	0	0	logfile
✔	9EKW	48139	2025-09-18	2024-12-03	3.01	3.55	3.25	3.4	0.005	0.85	0.0	0.05	13.44	0.01	2.000	6.46	0.48	4.6	95.4	0.0	0.68	0.57	0.78	3.69	3.4	0.004	0.57	0.0	0.04	15.38	0.00	2.447	3.76	1.98	3.5	96.5	0.0	2.44	1.38	0.59	0.82	2.53	15188	1868	4	0	0	0	0	logfile
✔	9KTo	62304	2025-09-18	2024-12-02	2.6	2.61	2.85	3.3	0.007	0.71	0.0	0.05	14.52	0.00	2.183	11.33	6.23	6.3	93.7	0.0	-1.68	0.47	0.59	1.81	2.6	0.004	0.73	0.0	0.05	18.75	0.00	2.272	8.06	5.03	6.7	93.3	0.0	-1.20	1.60	0.66	0.77	2.80	15974	1960	12	0	7	0	0	logfile
✔	9KTM	62305	2025-09-18	2024-12-02	2.9	2.94	2.92	3.3	0.005	0.81	0.0	0.05	17.39	0.00	1.801	39.07	2.73	15.0	84.6	0.4	-4.34	0.47	0.42	0.82	3.3	0.003	0.83	0.0	0.05	19.46	0.00	2.520	15.99	4.81	7.6	91.5	0.9	-3.45	1.50	0.52	0.49	0.77	14084	1694	14	0	7	0	0	logfile
✔	9KTR	62563	2025-09-19	2024-12-02	2.55	3.39	2.77	3.1	0.006	1.10	0.0	0.06	17.37	0.00	2.076	7.28	1.53	2.4	97.6	0.0	0.32	0.89	0.86	3.99	3.1	0.009	1.18	0.0	0.04	16.75	0.00	2.278	6.38	1.22	2.5	97.5	0.0	1.03	1.01	0.85	0.88	3.85	25368	3324	14	0	24	0	0	logfile
✔	9EKC	48119	2025-09-17	2024-12-02	3.8	4.21	3.74	18.0	0.004	0.86	0.0	0.03	15.02	0.01	2.625	5.52	0.10	0.8	99.2	0.0	1.16	0.58	0.87	0.29	19.0	0.002	0.64	0.0	0.03	17.09	0.00	2.619	5.96	4.51	0.0	100.0	0.0	7.64	1.63	0.59	0.87	-0.37	10659	1326	102	0	0	0	0	logfile
✔	9HJT	52226	2025-09-19	2024-12-02	3.26	3.97	3.46	3.6	0.003	0.53	0.0	0.04	16.96	0.00	2.164	5.10	0.00	2.3	97.7	0.0	-0.24	0.83	0.75	2.72	3.6	0.003	0.57	0.0	0.04	18.28	0.00	2.394	5.18	0.91	3.2	96.8	0.0	0.56	2.26	0.83	0.79	2.41	26083	1518	8	62	5	0	12764	logfile
✔	9KTL	62562	2025-09-19	2024-12-02	3.09	3.40	2.74	3.1	0.008	1.00	0.0	0.05	17.54	0.01	2.227	8.28	2.82	3.1	96.8	0.1	-0.37	0.90	0.88	4.02	3.2	0.005	1.04	0.0	0.04	16.97	0.00	2.494	6.66	2.31	2.8	97.2	0.1	0.91	0.37	0.89	0.90	3.93	25368	3324	14	0	24	0	0	logfile
✔	9EKB	48117	2025-09-18	2024-12-02	3.65	4.27	3.76	4.2	0.005	1.02	0.0	0.04	9.44	0.00	2.205	4.69	1.91	3.5	96.4	0.1	1.07	0.77	0.76	1.86	4.2	0.003	0.54	0.0	0.04	12.60	0.00	2.584	4.47	1.91	3.0	96.8	0.1	1.56	1.29	0.78	0.77	1.29	13324	1694	5	0	2	0	0	logfile
✔	9EK8	48112	2025-09-17	2024-12-01	2.35	2.31	2.54	1.5	0.032	2.22	0.0	0.09	17.07	0.02	2.182	4.14	0.79	0.1	99.9	0.0	1.81	0.92	0.88	5.78	1.6	0.007	0.68	0.0	0.03	13.33	0.00	2.540	5.56	1.59	0.4	99.6	0.0	4.15	1.02	0.95	0.93	6.92	8847	801	36	0	54	0	0	logfile
✔	9EJK	48103	2025-09-17	2024-11-28	3.08	3.28	3.10	3.3	0.002	0.49	0.0	0.04	15.77	0.00	2.199	3.71	0.49	4.6	95.4	0.0	-1.07	0.69	0.82	3.07	3.3	0.004	0.58	0.0	0.04	16.44	0.00	2.484	4.12	3.71	3.9	96.1	0.0	-0.46	0.45	0.70	0.84	3.01	9854	1293	3	0	0	0	0	logfile
✔	9EJM	48105	2025-09-17	2024-11-28	3.33	3.56	3.38	3.6	0.002	0.50	0.0	0.04	13.26	0.01	2.071	4.83	0.85	3.5	96.5	0.0	-0.46	0.67	0.82	3.66	3.6	0.003	0.56	0.0	0.04	14.75	0.00	2.003	4.58	1.80	5.4	94.6	0.0	-0.56	0.65	0.68	0.83	3.41	10056	1301	4	0	2	0	0	logfile
✔	9HJC	52212	2025-09-17	2024-11-28	2.1	2.26	2.09	2.3	0.006	0.71	0.0	0.05	14.74	0.00	2.469	2.21	0.00	2.5	97.5	0.0	1.01	0.60	0.79	6.45	2.3	0.003	0.54	0.0	0.04	15.93	0.00	1.846	1.43	0.23	2.7	97.3	0.0	0.65	0.24	0.60	0.80	6.28	7674	486	4	0	4	0	3806	logfile
✔	9EJL	48104	2025-09-17	2024-11-28	3.48	3.73	3.52	3.8	0.003	0.56	0.0	0.04	15.65	0.01	2.181	5.36	0.60	4.7	95.3	0.0	-0.70	0.72	0.79	2.59	3.8	0.004	0.62	0.0	0.04	16.63	0.00	2.600	6.06	2.72	4.3	95.7	0.0	-0.64	0.80	0.71	0.80	2.16	11764	1564	3	0	0	0	0	logfile
✔	9KRF	62310	2025-09-18	2024-11-27	2.8	2.85	2.99	3.1	0.005	0.48	0.0	0.04	12.53	0.00	2.237	20.51	1.76	7.0	93.0	0.0	-0.92	0.37	0.53	3.96	3.1	0.004	0.67	0.0	0.05	16.95	0.00	2.515	6.10	2.80	6.9	93.1	0.0	-0.58	0.71	0.67	0.82	3.52	16744	2051	14	0	7	0	0	logfile
✔	9KRH	62527	2025-09-17	2024-11-27	3.4	3.59	3.40	3.6	0.005	0.72	1.0	0.04	13.22	0.00	2.213	14.04	0.23	4.5	95.3	0.2	0.13	0.58	0.76	2.46	3.6	0.004	0.73	0.0	0.04	16.22	0.00	2.269	12.02	4.09	3.0	97.0	0.0	1.39	0.87	0.59	0.79	1.78	4231	532	2	0	3	0	0	logfile
✔	9KR6	62520	2025-09-17	2024-11-27	2.77	2.95	2.78	3.0	0.011	0.93	0.0	0.06	14.33	0.01	1.801	7.12	0.78	7.6	91.9	0.5	-3.04	0.74	0.84	4.83	3.0	0.002	0.61	0.0	0.04	17.08	0.00	2.466	4.89	2.73	4.0	96.0	0.0	0.08	0.50	0.69	0.84	3.67	6760	830	4	0	0	0	0	logfile

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