Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JN0	61617	2025-09-17	2024-09-22	2.84	3.91	2.92	3.4	0.003	0.71	0.0	0.05	14.14	0.00	2.199	4.38	0.70	3.5	96.5	0.0	0.44	0.90	0.89	3.49	3.4	0.003	0.64	0.0	0.04	14.08	0.00	2.488	3.02	1.25	4.3	95.7	0.0	0.40	0.29	0.90	0.89	3.63	12001	1459	11	0	22	0	0	logfile
✔	9DPE	47104	2025-09-17	2024-09-21	3.86	4.57	3.79	3.9	0.002	0.45	0.0	0.04	7.39	0.00	2.119	3.63	0.15	1.8	98.2	0.0	1.23	0.86	0.79	2.16	3.9	0.004	0.60	0.0	0.04	11.04	0.00	2.399	7.93	1.66	5.2	94.8	0.0	-0.28	1.34	0.87	0.81	2.51	11800	779	5	0	4	0	5786	logfile
✔	9JMJ	61604	2025-09-18	2024-09-20	3.4	3.37	3.33	3.3	0.004	0.66	0.0	0.05	16.06	0.01	2.232	4.67	0.20	3.6	96.4	0.0	-1.33	0.79	0.86	2.89	3.3	0.003	0.51	0.0	0.04	15.57	0.00	2.440	5.27	2.43	3.6	96.4	0.0	-0.74	0.38	0.80	0.87	3.07	13813	1656	13	0	25	0	0	logfile
✔	9DPC	47102	2025-09-18	2024-09-20	2.65	2.16	2.66	1.9	0.004	0.65	1.0	0.05	16.56	0.00	2.198	8.29	2.95	5.1	94.9	0.0	-1.16	0.82	0.83	3.47	1.9	0.003	0.60	0.0	0.05	16.62	0.00	2.263	6.40	2.59	4.3	95.7	0.0	-1.00	0.23	0.81	0.83	3.60	13370	1777	6	0	0	0	0	logfile
✔	9DP9	47099	2025-09-17	2024-09-20	4.1	5.32	4.14	4.1	0.002	0.47	0.0	0.03	24.28	0.00	1.014	17.50	0.00	0.0	0.0	0.0	—	0.92	0.83	—	4.1	0.009	0.83	0.0	0.04	25.93	0.01	1.790	46.85	0.00	0.0	0.0	0.0	—	4.15	0.93	0.89	—	9435	0	2	440	19	0	0	logfile
✔	9JMP	61609	2025-09-19	2024-09-20	3.1	2.99	2.99	3.1	0.009	0.76	0.0	0.05	16.53	0.01	2.270	3.13	0.29	3.3	96.7	0.0	-0.66	0.78	0.88	2.94	3.1	0.004	0.56	0.0	0.04	15.53	0.00	2.539	4.28	2.25	3.1	96.9	0.0	0.16	1.35	0.79	0.89	2.95	25407	3195	18	0	51	0	0	logfile
✔	9JMM	61606	2025-09-18	2024-09-20	2.8	2.93	2.79	2.9	0.008	0.91	0.0	0.06	16.11	0.01	2.132	6.36	1.02	3.7	96.3	0.0	-0.59	0.77	0.91	4.55	2.9	0.004	0.79	1.0	0.05	15.79	0.00	2.450	5.13	1.50	3.3	96.7	0.0	-0.40	0.93	0.77	0.91	4.38	13761	1645	13	0	27	0	0	logfile
✔	9DPA	47100	2025-09-18	2024-09-20	3.0	3.66	3.07	3.5	0.007	0.85	0.0	0.05	20.53	0.01	2.196	10.69	1.56	3.6	96.4	0.0	-0.62	0.83	0.83	2.66	3.5	0.005	0.72	0.0	0.04	20.43	0.00	2.446	7.57	1.90	4.0	96.0	0.0	-0.14	1.14	0.85	0.86	2.46	9878	1013	7	76	3	0	0	logfile
✔	9JMD	61598	2025-09-18	2024-09-20	2.74	3.44	2.87	3.3	0.004	0.74	0.0	0.04	16.97	0.02	2.139	7.54	0.82	3.6	96.3	0.1	0.01	0.69	0.78	2.41	3.2	0.003	0.62	0.0	0.04	16.62	0.00	2.156	5.79	2.14	3.1	96.9	0.0	1.10	1.29	0.62	0.79	3.10	18132	1149	6	0	3	2	8989	logfile
✔	9DPB	47101	2025-09-18	2024-09-20	2.9	3.52	2.89	3.3	0.005	0.77	0.0	0.04	19.84	0.00	2.231	9.93	1.45	3.3	96.7	0.0	-0.31	0.83	0.76	3.02	3.3	0.003	0.59	0.0	0.04	19.59	0.00	2.479	7.86	1.34	3.3	96.7	0.0	0.33	0.33	0.88	0.86	2.73	9836	1013	8	73	7	0	0	logfile
✔	9DoU	47091	2025-09-17	2024-09-19	3.2	2.74	3.14	3.1	0.006	1.12	0.0	0.06	21.23	0.01	2.173	1.07	0.24	2.1	97.9	0.0	-0.83	0.63	0.83	3.59	3.0	0.007	0.63	0.0	0.04	21.59	0.00	2.075	4.17	1.10	3.6	96.4	0.0	0.77	0.99	0.64	0.84	2.69	10494	924	6	145	6	0	0	logfile
✔	9GU9	51605	2025-09-19	2024-09-19	2.74	3.98	2.81	3.2	0.004	0.77	0.0	0.04	17.28	0.00	2.076	4.87	0.90	4.2	95.8	0.0	1.11	0.84	0.89	3.08	3.2	0.003	0.68	0.0	0.04	17.50	0.00	2.501	6.70	1.42	3.3	96.7	0.0	1.98	0.50	0.84	0.89	2.91	21574	2695	14	0	7	0	0	logfile
✔	9DoW	47094	2025-09-18	2024-09-19	3.1	3.74	3.14	3.6	0.004	0.73	0.0	0.04	20.02	0.01	2.236	10.10	1.56	3.4	96.6	0.0	-0.31	0.77	0.72	2.30	3.6	0.002	0.56	0.0	0.04	19.64	0.00	2.462	7.87	2.56	4.0	96.0	0.0	0.19	1.54	0.80	0.79	2.33	9816	1013	8	73	3	0	0	logfile
✔	9JLi	61589	2025-09-18	2024-09-19	2.84	3.79	2.87	3.3	0.005	0.60	0.0	0.20	15.95	0.00	1.868	8.12	0.00	5.0	95.0	0.0	0.04	0.87	0.87	3.39	3.3	0.003	0.60	0.0	0.04	16.06	0.00	2.569	4.60	1.06	6.0	94.0	0.0	0.02	0.73	0.87	0.87	3.54	14104	1806	6	0	6	0	0	logfile
✔	9GTR	51565	2025-09-18	2024-09-18	3.8	3.21	3.76	3.7	0.005	0.77	0.0	0.06	13.19	0.01	2.210	8.80	0.07	7.9	92.1	0.0	-1.81	0.48	0.67	1.99	3.7	0.003	0.64	0.0	0.05	14.29	0.00	2.439	7.65	0.72	6.6	93.4	0.0	-1.16	1.26	0.54	0.80	1.91	14343	1923	3	0	0	0	0	logfile
✔	9Do0	47070	2025-09-19	2024-09-18	2.54	3.28	2.57	3.1	0.002	0.43	0.0	0.03	14.96	0.00	2.125	2.83	0.17	1.5	98.5	0.0	1.87	0.69	0.85	3.34	3.1	0.003	0.49	0.0	0.04	14.78	0.00	2.366	2.20	0.52	1.4	98.6	0.0	2.42	1.77	0.58	0.81	3.37	22148	1394	6	0	8	104	11018	logfile
✔	9JLB	61582	2025-09-18	2024-09-18	3.0	3.25	3.05	3.2	0.004	0.58	0.0	0.05	14.32	0.01	2.024	4.60	0.78	2.1	97.9	0.0	2.13	0.61	0.84	4.06	3.2	0.004	0.52	0.0	0.04	14.97	0.01	2.308	3.81	0.56	3.2	96.8	0.0	1.87	0.31	0.62	0.85	3.65	16462	1052	5	0	2	0	8173	logfile
✔	9Do2	47071	2025-09-17	2024-09-18	3.45	3.80	3.49	3.8	0.003	0.62	0.0	0.05	12.85	0.00	2.491	5.10	2.05	3.6	96.4	0.0	-0.70	0.71	0.77	3.30	3.7	0.003	0.66	0.0	0.05	14.19	0.00	2.446	7.84	3.29	4.2	95.8	0.0	-0.76	0.63	0.74	0.79	2.82	9327	1109	23	0	45	0	0	logfile
✔	9DNB	47033	2025-09-19	2024-09-17	3.0	3.28	3.13	3.3	0.002	0.52	0.0	0.04	13.69	0.00	2.051	6.71	0.00	1.7	98.3	0.0	0.85	0.72	0.82	2.61	3.3	0.004	0.58	0.0	0.04	15.81	0.00	1.952	7.88	1.73	2.0	98.0	0.0	1.10	0.35	0.70	0.82	2.48	22963	3020	4	0	5	0	0	logfile
✔	9DNM	47042	2025-09-17	2024-09-17	3.47	2.46	3.46	2.1	0.004	0.63	0.0	0.04	16.43	0.01	2.222	7.96	0.18	4.7	95.3	0.0	-0.32	0.74	0.75	2.76	2.1	0.003	0.61	0.0	0.04	16.37	0.00	2.369	4.99	2.64	4.7	95.3	0.0	0.18	0.31	0.75	0.78	2.44	5235	668	4	0	1	0	0	logfile

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