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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 9DNB | 47033 | 2025-09-19 | 2024-09-17 | 3.0 | 3.28 | 3.13 | 3.3 | 0.002 | 0.52 | 0.0 | 0.04 | 13.69 | 0.00 | 2.051 | 6.71 | 0.00 | 1.7 | 98.3 | 0.0 | 0.85 | 0.72 | 0.82 | 2.61 | 3.3 | 0.004 | 0.58 | 0.0 | 0.04 | 15.81 | 0.00 | 1.952 | 7.88 | 1.73 | 2.0 | 98.0 | 0.0 | 1.10 | 0.35 | 0.70 | 0.82 | 2.48 | 22963 | 3020 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 9DN5 | 47026 | 2025-09-19 | 2024-09-16 | 3.3 | 3.59 | 3.44 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 14.32 | 0.00 | 2.148 | 6.43 | 0.00 | 1.5 | 98.5 | 0.0 | 0.29 | 0.70 | 0.76 | 1.63 | 3.6 | 0.002 | 0.54 | 0.0 | 0.04 | 15.73 | 0.00 | 2.107 | 8.34 | 1.31 | 1.9 | 98.1 | 0.0 | 1.56 | 0.95 | 0.70 | 0.76 | 1.48 | 21000 | 2679 | 3 | 0 | 5 | 0 | 0 | logfile |
✔ | 9GSJ | 51550 | 2025-09-17 | 2024-09-16 | 3.6 | 3.94 | 3.69 | 3.9 | 0.003 | 0.73 | 0.0 | 0.04 | 16.58 | 0.00 | 2.108 | 13.61 | 2.49 | 6.8 | 92.7 | 0.4 | 0.30 | 0.62 | 0.80 | 0.84 | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 17.27 | 0.00 | 2.418 | 9.96 | 3.63 | 7.0 | 92.7 | 0.3 | 1.19 | 0.48 | 0.62 | 0.80 | 0.78 | 8870 | 1144 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 9DMY | 47020 | 2025-09-17 | 2024-09-16 | 2.8 | 2.57 | 2.75 | 2.5 | 0.002 | 0.48 | 0.0 | 0.05 | 13.08 | 0.00 | 2.331 | 10.31 | 0.00 | 1.5 | 98.5 | 0.0 | -3.48 | 0.44 | 0.78 | 3.76 | 2.5 | 0.004 | 0.73 | 0.0 | 0.05 | 18.33 | 0.00 | 2.628 | 15.42 | 2.56 | 6.0 | 94.0 | 0.0 | -4.19 | 1.36 | 0.45 | 0.80 | 3.19 | 5550 | 690 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 9JKQ | 61567 | 2025-09-17 | 2024-09-16 | 2.66 | 2.84 | 2.68 | 2.9 | 0.003 | 0.53 | 0.0 | 0.04 | 13.25 | 0.00 | 2.097 | 5.82 | 0.00 | 2.9 | 97.1 | 0.0 | 0.84 | 0.67 | 0.82 | 3.46 | 2.9 | 0.004 | 0.59 | 0.0 | 0.04 | 15.89 | 0.00 | 2.522 | 5.64 | 2.30 | 3.1 | 96.9 | 0.0 | 1.08 | 1.24 | 0.67 | 0.85 | 3.08 | 8386 | 1055 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 9DN0 | 47022 | 2025-09-19 | 2024-09-16 | 3.1 | 3.40 | 3.16 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 12.72 | 0.00 | 2.525 | 1.58 | 0.00 | 2.2 | 97.8 | 0.0 | 0.56 | 0.62 | 0.84 | 3.49 | 3.3 | 0.003 | 0.51 | 0.0 | 0.04 | 13.55 | 0.00 | 2.577 | 1.62 | 0.93 | 4.1 | 95.9 | 0.0 | 1.23 | 0.42 | 0.61 | 0.83 | 2.48 | 22176 | 1364 | 11 | 0 | 0 | 0 | 11088 | logfile |
✔ | 9DMW | 47019 | 2025-09-19 | 2024-09-16 | 3.7 | 4.03 | 3.80 | 4.0 | 0.003 | 0.70 | 0.0 | 0.05 | 14.81 | 0.00 | 2.135 | 5.16 | 0.00 | 2.6 | 97.4 | 0.0 | -0.63 | 0.76 | 0.76 | 0.91 | 4.0 | 0.003 | 0.59 | 0.0 | 0.04 | 16.33 | 0.00 | 2.004 | 8.00 | 2.16 | 2.2 | 97.8 | 0.0 | 1.08 | 1.21 | 0.77 | 0.77 | 0.80 | 21212 | 2729 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 9GSN | 51552 | 2025-09-19 | 2024-09-16 | 2.58 | 3.80 | 2.62 | 3.1 | 0.009 | 0.76 | 0.0 | 0.04 | 16.58 | 0.01 | 2.086 | 5.93 | 0.73 | 4.0 | 96.0 | 0.0 | 1.02 | 0.81 | 0.89 | 3.38 | 3.1 | 0.003 | 0.68 | 0.0 | 0.04 | 17.02 | 0.00 | 2.432 | 5.61 | 1.24 | 3.3 | 96.6 | 0.0 | 1.64 | 0.37 | 0.81 | 0.89 | 2.93 | 21574 | 2695 | 12 | 0 | 7 | 0 | 0 | logfile |
✔ | 9DN2 | 47024 | 2025-09-18 | 2024-09-16 | 3.24 | 3.82 | 3.50 | 3.8 | 0.002 | 0.61 | 0.0 | 0.05 | 13.02 | 0.00 | 2.531 | 4.07 | 1.96 | 4.6 | 95.4 | 0.0 | -1.02 | 0.64 | 0.73 | 3.03 | 3.8 | 0.003 | 0.66 | 0.0 | 0.05 | 14.85 | 0.00 | 2.506 | 6.33 | 3.76 | 6.2 | 93.8 | 0.0 | -0.77 | 0.34 | 0.60 | 0.71 | 2.60 | 17397 | 2148 | 27 | 0 | 48 | 0 | 0 | logfile |
✔ | 9DN7 | 47032 | 2025-09-19 | 2024-09-16 | 3.25 | 3.50 | 3.38 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 14.43 | 0.00 | 1.975 | 6.17 | 0.00 | 3.1 | 96.9 | 0.0 | 0.32 | 0.71 | 0.80 | 2.09 | 3.5 | 0.003 | 0.55 | 0.0 | 0.04 | 15.79 | 0.00 | 1.948 | 7.75 | 1.10 | 2.9 | 97.1 | 0.0 | 1.21 | 0.32 | 0.71 | 0.81 | 1.82 | 23772 | 3021 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 9JK5 | 61544 | 2025-09-17 | 2024-09-15 | 2.92 | 3.26 | 2.94 | 3.2 | 0.003 | 0.60 | 0.0 | 0.04 | 18.88 | 0.01 | 2.202 | 6.87 | 5.95 | 4.1 | 95.9 | 0.0 | 1.12 | 0.57 | 0.80 | 1.50 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 17.95 | 0.00 | 2.444 | 5.27 | 2.66 | 3.8 | 96.2 | 0.0 | 1.55 | 0.90 | 0.60 | 0.82 | 1.69 | 8359 | 1052 | 2 | 0 | 3 | 0 | 0 | logfile |
✔ | 9JK9 | 61548 | 2025-09-18 | 2024-09-15 | 2.2 | 2.48 | 2.29 | 2.5 | 0.006 | 0.97 | 0.0 | 0.05 | 9.35 | 0.01 | 2.249 | 5.96 | 0.30 | 3.0 | 97.0 | 0.0 | -2.48 | 0.64 | 0.78 | 4.58 | 2.5 | 0.004 | 0.90 | 0.0 | 0.04 | 15.19 | 0.01 | 1.721 | 9.96 | 2.06 | 2.8 | 97.2 | 0.0 | 2.00 | 1.24 | 0.66 | 0.82 | 3.06 | 18582 | 2268 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 9JK8 | 61547 | 2025-09-18 | 2024-09-15 | 2.6 | 2.84 | 2.62 | 2.9 | 0.005 | 0.82 | 0.0 | 0.05 | 9.73 | 0.01 | 2.286 | 13.47 | 0.00 | 3.1 | 96.9 | 0.0 | -1.32 | 0.64 | 0.80 | 3.74 | 2.9 | 0.003 | 0.61 | 0.0 | 0.04 | 14.90 | 0.00 | 2.356 | 9.07 | 1.61 | 3.1 | 96.9 | 0.0 | 1.72 | 1.62 | 0.66 | 0.83 | 3.47 | 18504 | 2256 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 9JK7 | 61546 | 2025-09-18 | 2024-09-15 | 2.9 | 3.10 | 2.95 | 3.1 | 0.005 | 0.67 | 0.0 | 0.05 | 7.69 | 0.00 | 2.218 | 12.11 | 0.00 | 0.8 | 99.2 | 0.0 | -0.76 | 0.65 | 0.79 | 3.59 | 3.1 | 0.004 | 0.58 | 0.0 | 0.04 | 14.82 | 0.00 | 2.599 | 9.60 | 1.85 | 2.2 | 97.8 | 0.0 | 2.05 | 0.54 | 0.66 | 0.82 | 2.60 | 17820 | 2172 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 9GSG | 51547 | 2025-09-17 | 2024-09-15 | 2.83 | 3.09 | 2.90 | 3.1 | 0.006 | 1.22 | 0.0 | 0.05 | 12.45 | 0.01 | 1.976 | 6.81 | 0.00 | 4.9 | 95.0 | 0.1 | -1.03 | 0.55 | 0.78 | 3.02 | 3.1 | 0.005 | 0.67 | 0.0 | 0.05 | 14.86 | 0.01 | 1.934 | 4.96 | 1.50 | 4.8 | 95.2 | 0.0 | 0.55 | 0.35 | 0.59 | 0.82 | 2.65 | 9093 | 1153 | 5 | 0 | 8 | 10 | 0 | logfile |
✔ | 9JK6 | 61545 | 2025-09-18 | 2024-09-15 | 3.0 | 3.22 | 3.01 | 3.2 | 0.005 | 0.87 | 0.0 | 0.05 | 8.38 | 0.01 | 2.269 | 3.49 | 0.00 | 1.4 | 98.6 | 0.0 | -2.44 | 0.67 | 0.78 | 3.24 | 3.2 | 0.003 | 0.63 | 0.0 | 0.04 | 15.07 | 0.00 | 2.554 | 6.76 | 3.52 | 3.0 | 97.0 | 0.0 | 1.69 | 1.37 | 0.71 | 0.83 | 2.36 | 18504 | 2256 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 9JKA | 61549 | 2025-09-18 | 2024-09-15 | 2.5 | 2.91 | 2.70 | 2.9 | 0.007 | 0.90 | 0.0 | 0.05 | 8.50 | 0.01 | 2.264 | 4.45 | 0.00 | 1.4 | 98.6 | 0.0 | -2.23 | 0.63 | 0.80 | 3.84 | 2.9 | 0.003 | 0.57 | 0.0 | 0.04 | 15.85 | 0.00 | 2.604 | 7.05 | 1.58 | 1.0 | 99.0 | 0.0 | 2.40 | 0.68 | 0.65 | 0.83 | 2.78 | 17820 | 2172 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 9JKB | 61550 | 2025-09-17 | 2024-09-15 | 3.93 | 4.21 | 3.97 | 4.1 | 0.003 | 0.67 | 0.0 | 0.04 | 15.64 | 0.01 | 2.253 | 7.86 | 0.19 | 4.6 | 95.4 | 0.0 | -0.64 | 0.78 | 0.81 | 0.96 | 4.1 | 0.004 | 0.73 | 0.0 | 0.04 | 17.50 | 0.00 | 2.530 | 14.40 | 2.75 | 4.5 | 95.5 | 0.0 | 0.20 | 1.33 | 0.78 | 0.80 | 1.08 | 9532 | 1179 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 9JK3 | 61542 | 2025-09-17 | 2024-09-14 | 2.45 | 2.81 | 2.57 | 2.7 | 0.006 | 0.63 | 0.0 | 0.04 | 18.94 | 0.00 | 2.279 | 4.30 | 3.61 | 2.7 | 97.3 | 0.0 | 2.18 | 0.66 | 0.90 | 2.96 | 2.7 | 0.003 | 0.54 | 0.0 | 0.04 | 17.23 | 0.00 | 2.463 | 4.07 | 3.18 | 2.4 | 97.6 | 0.0 | 2.78 | 0.25 | 0.63 | 0.89 | 2.27 | 8401 | 1054 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 9JJo | 61534 | 2025-09-17 | 2024-09-14 | 3.24 | 3.70 | 3.33 | 3.6 | 0.002 | 0.76 | 3.0 | 0.04 | 17.59 | 0.00 | 2.217 | 7.39 | 0.21 | 3.0 | 97.0 | 0.0 | 1.91 | 0.47 | 0.69 | 1.74 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 17.18 | 0.00 | 2.568 | 5.14 | 2.34 | 3.5 | 96.5 | 0.0 | 2.06 | 0.97 | 0.65 | 0.88 | 1.63 | 8379 | 1051 | 4 | 0 | 5 | 0 | 0 | logfile |