Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JJN	61533	2025-09-17	2024-09-14	2.49	2.74	2.55	2.7	0.003	0.57	0.0	0.04	19.06	0.01	2.262	4.15	2.03	2.0	98.0	0.0	2.44	0.62	0.85	2.13	2.7	0.003	0.53	0.0	0.04	17.36	0.00	2.511	3.02	2.13	2.5	97.5	0.0	2.54	0.88	0.62	0.86	2.55	8358	1048	4	0	5	0	0	logfile
✔	9JJo	61534	2025-09-17	2024-09-14	3.24	3.70	3.33	3.6	0.002	0.76	3.0	0.04	17.59	0.00	2.217	7.39	0.21	3.0	97.0	0.0	1.91	0.47	0.69	1.74	3.6	0.003	0.60	0.0	0.04	17.18	0.00	2.568	5.14	2.34	3.5	96.5	0.0	2.06	0.97	0.65	0.88	1.63	8379	1051	4	0	5	0	0	logfile
✔	9GS2	51537	2025-09-19	2024-09-13	3.46	4.48	3.70	4.0	0.008	0.81	0.0	0.04	15.28	0.00	2.066	5.80	0.08	4.7	95.2	0.1	-0.49	0.83	0.84	1.40	4.0	0.005	0.91	0.0	0.04	16.12	0.00	2.432	12.48	2.49	5.3	94.6	0.1	-0.23	0.87	0.83	0.85	1.40	22365	2798	9	0	1	0	0	logfile
✔	9JJB	61522	2025-09-17	2024-09-13	2.68	2.96	2.79	3.1	0.002	0.52	0.0	0.04	15.92	0.00	1.453	6.62	1.53	1.4	98.6	0.0	1.12	0.63	0.81	3.67	3.1	0.003	0.53	0.0	0.04	16.28	0.00	2.562	3.95	3.30	2.0	98.0	0.0	1.10	0.29	0.66	0.84	3.64	8280	1102	6	0	2	0	0	logfile
✔	9DME	47002	2025-09-17	2024-09-13	3.2	3.04	2.64	3.3	0.035	0.82	0.0	0.07	8.68	0.01	2.273	17.68	0.00	0.0	100.0	0.0	-0.67	0.34	0.70	5.54	3.3	0.061	0.76	0.0	0.07	10.09	0.01	2.324	10.38	0.74	5.3	94.7	0.0	-1.16	1.21	0.33	0.70	6.07	2475	315	45	0	45	0	0	logfile
✔	9JJ6	61517	2025-09-17	2024-09-13	2.94	3.09	2.94	3.1	0.007	0.66	0.0	0.04	28.52	0.00	2.241	7.93	0.73	2.2	97.8	0.0	0.54	0.70	0.86	2.93	3.1	0.003	0.55	0.0	0.04	17.01	0.00	2.318	6.23	2.20	1.7	98.3	0.0	1.43	0.80	0.68	0.86	3.14	6314	771	3	0	6	0	0	logfile
✔	9JJ9	61520	2025-09-17	2024-09-13	2.71	2.95	2.76	3.0	0.002	0.45	0.0	0.04	16.01	0.00	2.282	6.57	0.76	1.4	98.6	0.0	1.40	0.60	0.76	2.89	3.0	0.003	0.56	0.0	0.04	16.64	0.01	1.417	4.49	3.80	3.1	96.9	0.0	0.27	0.65	0.63	0.80	3.47	7716	1033	4	0	1	0	0	logfile
✔	9JJi	61528	2025-09-17	2024-09-13	3.4	2.52	3.40	2.2	0.005	0.60	0.0	0.05	12.41	0.00	2.221	4.62	0.00	2.6	97.4	0.0	-0.45	0.60	0.80	3.64	2.1	0.003	0.64	0.0	0.05	15.09	0.00	2.546	4.41	3.04	3.0	97.0	0.0	-0.67	2.01	0.61	0.82	3.17	10021	1332	4	0	0	0	0	logfile
✔	9DMB	47000	2025-09-18	2024-09-12	4.27	5.77	4.35	4.3	0.002	0.57	0.0	0.04	12.96	0.00	2.144	3.74	0.14	5.5	94.5	0.0	-1.05	0.82	0.76	—	4.3	0.004	0.83	0.0	0.05	12.91	0.00	2.470	13.18	0.00	8.9	91.1	0.0	-1.88	1.30	0.86	0.86	—	21021	2448	54	0	141	0	0	logfile
✔	9DM7	46999	2025-09-17	2024-09-12	3.02	3.12	3.04	3.1	0.003	0.67	0.0	0.04	12.69	0.00	1.675	7.45	0.00	6.7	93.3	0.0	-0.87	0.59	0.75	1.57	3.1	0.003	0.60	0.0	0.04	14.72	0.00	2.624	5.29	1.86	6.8	93.2	0.0	-0.45	0.32	0.60	0.78	1.43	4646	598	3	0	0	0	0	logfile
✔	9JiK	61508	2025-09-17	2024-09-12	2.91	2.01	2.92	1.9	0.007	0.84	0.0	0.05	9.67	0.01	2.323	2.79	0.00	5.2	94.8	0.0	-2.82	0.75	0.78	4.92	1.9	0.005	0.72	0.0	0.04	12.88	0.00	2.500	8.03	3.49	6.1	93.9	0.0	-1.05	1.03	0.77	0.80	4.83	5850	766	6	0	0	0	0	logfile
✔	9Jio	61512	2025-09-17	2024-09-12	2.87	2.04	2.89	1.9	0.007	1.12	0.0	0.04	16.81	0.01	2.292	6.20	0.95	7.0	93.0	0.0	-1.82	0.74	0.76	2.82	1.8	0.004	0.70	0.0	0.04	17.53	0.01	2.540	8.12	5.85	7.8	92.2	0.0	-1.12	0.46	0.75	0.77	2.96	5808	760	6	0	0	0	0	logfile
✔	9JJ2	61515	2025-09-17	2024-09-12	3.0	3.64	2.95	3.4	0.004	0.80	0.0	0.04	17.56	0.00	2.484	9.79	1.44	2.4	97.6	0.0	2.59	0.64	0.85	2.03	3.5	0.003	0.72	0.0	0.04	17.65	0.00	2.512	9.54	3.61	2.4	97.6	0.0	2.71	0.90	0.66	0.87	1.90	3916	516	2	0	0	0	0	logfile
✔	9JJ1	61514	2025-09-17	2024-09-12	2.72	3.42	2.74	3.2	0.003	0.50	0.0	0.04	19.01	0.00	1.693	5.35	0.60	2.8	97.2	0.0	4.37	0.65	0.86	2.93	3.2	0.003	0.54	0.0	0.03	18.60	0.00	1.926	4.83	1.40	2.1	97.9	0.0	4.22	1.18	0.65	0.86	2.86	4842	614	4	0	8	0	0	logfile
✔	9JJ3	61516	2025-09-17	2024-09-12	3.03	3.86	3.02	3.6	0.004	0.71	0.0	0.04	16.42	0.01	2.247	10.65	0.20	7.0	93.0	0.0	2.17	0.65	0.85	1.70	3.6	0.003	0.64	0.0	0.04	17.02	0.00	2.485	7.88	5.14	5.7	94.3	0.0	2.52	0.29	0.65	0.85	1.70	4586	582	2	0	0	0	0	logfile
✔	9JiL	61509	2025-09-17	2024-09-12	2.44	1.92	2.47	1.7	0.004	0.58	0.0	0.04	15.65	0.01	2.337	5.61	0.94	3.5	96.2	0.3	1.41	0.77	0.83	4.70	1.7	0.002	0.54	0.0	0.04	16.84	0.00	2.529	3.54	3.13	3.7	96.3	0.0	0.75	0.99	0.79	0.83	5.16	5916	774	6	0	0	0	0	logfile
✔	9JiM	61510	2025-09-17	2024-09-12	2.86	1.99	2.85	2.0	0.004	0.55	0.0	0.04	12.48	0.00	2.280	4.62	0.00	4.6	95.4	0.0	-1.61	0.76	0.80	4.91	1.8	0.005	0.65	0.0	0.04	14.67	0.00	2.555	7.19	2.48	7.0	93.0	0.0	-0.81	0.45	0.77	0.81	4.78	5968	778	6	0	0	0	0	logfile
✔	9JiN	61511	2025-09-17	2024-09-12	2.56	2.06	2.56	2.0	0.005	0.63	0.0	0.05	15.59	0.01	2.197	7.07	0.31	7.3	92.7	0.0	-0.80	0.74	0.77	3.42	1.8	0.004	0.62	0.0	0.04	16.80	0.01	2.587	7.60	5.03	7.6	92.4	0.0	-0.92	0.75	0.74	0.76	3.72	5914	764	6	0	0	0	0	logfile
✔	9GRC	51520	2025-09-17	2024-09-11	3.5	4.03	3.54	15.0	0.002	0.66	0.0	0.04	13.80	0.00	2.197	7.53	0.00	3.9	96.1	0.0	-1.19	0.41	0.06	0.59	9.8	0.003	0.70	0.0	0.04	16.02	0.00	2.438	10.57	1.34	4.7	95.3	0.0	-0.77	1.50	0.47	0.16	0.63	9717	1263	6	0	2	0	0	logfile
✔	9Jii	61506	2025-09-17	2024-09-11	2.54	1.93	2.54	1.8	0.007	0.68	0.0	0.05	14.72	0.02	2.083	5.76	0.63	5.5	94.5	0.0	-0.24	0.78	0.77	3.75	1.7	0.005	0.66	0.0	0.05	15.88	0.01	2.465	7.31	4.89	5.6	94.4	0.0	-0.61	0.41	0.78	0.77	4.17	5928	774	6	0	0	0	0	logfile

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