Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9GQo	51510	2025-09-17	2024-09-09	3.46	4.74	3.51	3.6	0.003	0.71	0.0	0.04	18.40	0.01	2.090	14.91	0.41	6.2	93.8	0.0	-1.32	0.77	0.70	0.13	3.6	0.003	0.81	0.0	0.04	18.33	0.00	1.966	18.37	3.45	6.1	93.9	0.0	-0.93	0.55	0.82	0.81	0.04	6716	880	2	0	3	0	0	logfile
✔	9JHJ	61484	2025-09-17	2024-09-09	3.2	3.66	3.24	1.8	0.005	0.77	1.0	0.05	13.23	0.00	2.208	8.68	0.15	5.2	94.8	0.0	-0.60	0.89	0.88	2.66	1.5	0.004	0.61	0.0	0.04	14.26	0.00	2.429	7.05	1.50	4.5	95.5	0.0	0.20	1.21	0.89	0.89	2.39	7761	1105	6	0	1	0	0	logfile
✔	9JH9	61476	2025-09-18	2024-09-09	3.42	4.52	3.54	4.0	0.009	0.96	0.0	0.06	15.13	0.01	1.407	5.87	0.15	4.6	95.4	0.0	-2.74	0.89	0.78	2.69	4.0	0.022	0.82	0.0	0.16	17.74	0.00	2.082	14.42	1.72	5.3	94.7	0.0	0.09	1.12	0.90	0.86	2.22	13509	1490	10	70	4	0	0	logfile
✔	9JH8	61475	2025-09-17	2024-09-09	3.81	5.42	3.84	4.4	0.012	1.20	0.0	0.07	16.96	0.01	1.844	11.82	0.15	7.4	92.5	0.1	-3.72	0.84	0.67	-0.06	4.5	0.003	0.75	0.0	0.04	19.00	0.00	2.104	18.68	1.95	4.8	95.2	0.0	-0.62	1.49	0.87	0.81	0.41	6754	745	4	35	1	0	0	logfile
✔	9DKD	46953	2025-09-18	2024-09-08	3.3	3.62	3.43	3.6	0.003	0.66	0.0	0.04	15.11	0.00	2.072	7.00	0.00	2.6	97.4	0.0	0.12	0.72	0.75	2.00	3.6	0.004	0.81	1.0	0.04	16.62	0.00	2.026	11.00	1.84	3.5	96.5	0.0	0.87	0.35	0.73	0.76	1.56	17901	2313	2	0	5	0	0	logfile
✔	9DKH	46958	2025-09-19	2024-09-08	3.9	4.26	4.05	4.1	0.003	0.65	0.0	0.04	14.62	0.00	1.991	6.29	0.00	2.9	97.1	0.0	-0.12	0.80	0.78	1.06	4.1	0.003	0.60	0.0	0.04	16.24	0.00	1.954	8.83	1.67	2.1	97.9	0.0	1.10	0.40	0.80	0.79	0.78	21004	2691	3	0	5	0	0	logfile
✔	9DK9	46948	2025-09-17	2024-09-08	2.68	2.76	2.74	3.4	0.003	0.56	0.0	0.04	17.61	0.00	2.166	5.61	0.78	1.2	98.8	0.0	1.20	0.44	0.68	1.44	3.4	0.003	0.55	0.0	0.04	17.92	0.00	2.388	5.74	2.60	2.3	97.7	0.0	1.36	1.07	0.46	0.74	2.08	7660	517	1	0	0	0	3844	logfile
✔	9DKE	46954	2025-09-18	2024-09-08	3.6	3.97	3.75	3.8	0.003	0.71	0.0	0.04	14.22	0.00	2.155	6.20	0.00	2.4	97.6	0.0	0.44	0.74	0.66	1.05	3.8	0.002	0.61	0.0	0.04	15.85	0.00	2.226	8.89	1.48	2.8	97.2	0.0	1.63	0.43	0.74	0.67	0.76	17457	2291	2	0	5	0	0	logfile
✔	9DK8	46946	2025-09-17	2024-09-08	3.3	3.83	3.42	3.8	0.003	0.56	0.0	0.04	14.36	0.00	2.207	9.10	0.00	6.4	93.6	0.0	-0.16	0.61	0.83	2.88	3.8	0.004	0.67	0.0	0.04	17.19	0.00	2.375	8.13	1.36	6.5	93.5	0.0	-0.15	0.43	0.61	0.83	2.17	6678	858	6	0	0	0	0	logfile
✔	9DKA	46949	2025-09-17	2024-09-08	3.0	4.00	3.07	3.7	0.004	0.61	0.0	0.04	17.10	0.01	2.147	5.04	0.52	1.6	98.3	0.2	0.64	0.64	0.80	2.00	3.7	0.010	1.27	1.0	0.11	17.10	0.00	2.078	9.05	2.58	3.1	96.9	0.0	2.04	1.22	0.55	0.81	1.91	7726	517	2	0	1	0	3879	logfile
✔	9DJY	46940	2025-09-18	2024-09-07	3.6	3.97	3.78	3.9	0.003	0.59	0.0	0.04	14.62	0.00	2.031	4.84	0.00	2.2	97.8	0.0	0.56	0.74	0.81	1.41	3.9	0.002	0.51	0.0	0.04	16.06	0.00	1.965	7.01	1.53	2.3	97.7	0.0	2.12	0.33	0.75	0.82	1.34	18424	2341	2	0	5	0	0	logfile
✔	9DK0	46942	2025-09-19	2024-09-07	3.7	3.93	3.76	3.9	0.003	0.60	0.0	0.04	14.38	0.00	2.029	5.96	0.00	2.6	97.4	0.0	0.48	0.77	0.82	1.50	3.9	0.002	0.55	0.0	0.04	15.85	0.00	2.007	6.08	1.57	2.8	97.2	0.0	1.85	0.31	0.77	0.82	1.24	21050	2690	3	0	5	0	0	logfile
✔	9JGH	61464	2025-09-19	2024-09-07	3.7	5.24	3.93	4.1	0.002	0.68	0.0	0.04	18.39	0.00	2.158	13.54	0.07	9.2	90.5	0.3	-1.91	0.88	0.74	0.42	4.2	0.003	0.71	0.0	0.05	18.71	0.00	2.269	16.02	4.78	10.5	89.2	0.3	-2.33	1.01	0.90	0.82	0.82	25621	3233	15	0	0	0	0	logfile
✔	9DJZ	46941	2025-09-19	2024-09-07	3.9	4.28	4.13	4.2	0.003	0.62	0.0	0.04	14.44	0.00	2.020	7.21	0.04	2.9	97.1	0.0	-0.13	0.81	0.79	1.19	4.2	0.003	0.61	0.0	0.04	15.95	0.00	1.932	10.60	1.56	3.1	96.9	0.0	0.66	0.39	0.81	0.80	1.06	23913	3047	4	0	5	0	0	logfile
✔	9DJ7	46935	2025-09-19	2024-09-06	3.8	4.10	3.89	4.0	0.003	0.61	0.0	0.04	14.38	0.00	2.023	6.46	0.00	2.9	97.1	0.0	0.04	0.79	0.83	1.14	4.0	0.002	0.55	0.0	0.04	15.86	0.00	2.023	7.52	1.68	2.4	97.6	0.0	1.24	0.31	0.79	0.83	1.17	23851	3026	4	0	5	0	0	logfile
✔	9DJU	46938	2025-09-18	2024-09-06	4.0	4.31	4.14	4.2	0.003	0.71	0.0	0.05	14.72	0.00	2.208	7.56	0.00	2.9	97.1	0.0	-0.41	0.75	0.74	—	4.2	0.005	0.92	2.0	0.05	16.79	0.01	2.240	15.62	3.44	4.2	95.8	0.0	0.18	0.49	0.77	0.76	—	20656	2643	3	0	4	0	0	logfile
✔	9DiU	46919	2025-09-18	2024-09-06	4.1	4.42	4.18	4.2	0.003	0.72	0.0	0.04	14.95	0.00	2.257	7.72	0.05	2.4	97.6	0.0	-0.10	0.78	0.64	—	4.2	0.003	0.64	0.0	0.04	14.52	0.00	2.436	11.41	0.00	3.0	97.0	0.0	1.01	0.33	0.81	0.73	—	17847	2302	2	0	4	0	0	logfile
✔	9DJ8	46936	2025-09-18	2024-09-06	2.58	3.37	2.52	3.0	0.007	0.94	4.0	0.05	14.20	0.01	1.772	3.23	2.66	5.0	95.0	0.0	-1.93	0.66	0.85	5.05	3.0	0.003	0.54	0.0	0.04	14.43	0.00	2.211	1.48	0.48	4.4	95.6	0.0	0.20	0.49	0.66	0.87	4.23	14846	938	4	0	3	0	7277	logfile
✔	9JFV	61441	2025-09-17	2024-09-05	2.67	2.24	2.67	1.8	0.005	0.84	2.0	0.05	16.64	0.00	2.199	16.59	0.83	5.4	94.2	0.4	-0.54	0.67	0.67	1.00	1.8	0.004	0.66	0.0	0.05	17.55	0.00	2.532	10.99	4.54	5.7	94.3	0.0	-0.32	1.26	0.67	0.68	1.53	7035	920	4	0	0	0	0	logfile
✔	9DiL	46912	2025-09-17	2024-09-05	3.3	3.74	3.09	3.5	0.003	0.52	0.0	0.04	10.16	0.00	2.211	4.20	1.55	3.8	96.2	0.0	2.06	0.69	0.88	2.33	3.5	0.003	0.64	0.0	0.04	13.99	0.00	2.477	4.81	1.35	3.9	96.0	0.1	1.94	0.60	0.68	0.89	2.08	9783	1236	5	0	4	0	0	logfile

• ← previous
• Page 43 of 600
• next →