Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JFV	61441	2025-09-17	2024-09-05	2.67	2.24	2.67	1.8	0.005	0.84	2.0	0.05	16.64	0.00	2.199	16.59	0.83	5.4	94.2	0.4	-0.54	0.67	0.67	1.00	1.8	0.004	0.66	0.0	0.05	17.55	0.00	2.532	10.99	4.54	5.7	94.3	0.0	-0.32	1.26	0.67	0.68	1.53	7035	920	4	0	0	0	0	logfile
✔	9Di3	46897	2025-09-18	2024-09-05	4.1	4.34	4.15	4.2	0.004	0.68	0.0	0.05	14.95	0.00	2.237	9.29	0.00	3.7	96.3	0.0	0.12	0.78	0.75	—	4.2	0.003	0.66	0.0	0.04	14.61	0.00	2.252	11.36	0.05	2.7	97.3	0.0	0.93	1.21	0.78	0.75	—	17694	2282	2	0	4	0	0	logfile
✔	9DiA	46902	2025-09-18	2024-09-05	2.97	3.51	3.01	3.4	0.003	0.56	0.0	0.05	15.04	0.00	1.649	7.05	0.42	4.7	95.3	0.0	-0.34	0.78	0.81	3.59	3.4	0.004	0.94	1.0	0.05	14.94	0.00	1.910	5.49	0.99	4.7	95.3	0.0	-0.56	1.17	0.78	0.82	3.80	12709	883	10	0	23	0	5806	logfile
✔	9JFW	61442	2025-09-17	2024-09-05	3.13	2.26	3.17	2.1	0.003	0.62	1.0	0.04	16.74	0.00	2.156	10.42	0.48	4.8	95.2	0.0	-0.38	0.75	0.74	2.09	2.0	0.003	0.62	0.0	0.04	17.18	0.00	2.524	9.46	4.57	4.0	96.0	0.0	-0.09	0.50	0.77	0.76	1.77	7990	1037	5	0	0	0	0	logfile
✔	9JG0	61446	2025-09-17	2024-09-05	2.91	3.16	2.93	3.2	0.003	0.51	0.0	0.04	14.67	0.00	2.239	8.70	0.13	1.9	98.1	0.0	0.72	0.56	0.64	2.97	3.2	0.005	0.71	0.0	0.04	16.68	0.00	2.501	8.77	4.53	1.9	98.1	0.0	1.02	1.28	0.64	0.79	2.75	7271	950	4	0	0	0	0	logfile
✔	9JFY	61444	2025-09-17	2024-09-05	3.21	3.44	3.23	3.5	0.003	0.46	0.0	0.04	15.56	0.00	2.208	5.34	0.00	1.9	98.1	0.0	1.40	0.58	0.66	1.94	3.5	0.003	0.58	0.0	0.04	16.63	0.00	2.317	5.00	3.29	1.8	98.2	0.0	1.13	0.72	0.63	0.77	1.70	8805	1133	7	0	1	0	0	logfile
✔	9JFZ	61445	2025-09-17	2024-09-05	2.9	2.20	2.96	2.1	0.003	0.69	1.0	0.04	16.11	0.01	2.203	8.79	0.57	4.4	95.6	0.0	0.21	0.75	0.75	2.61	2.0	0.004	0.67	0.0	0.04	17.10	0.00	2.481	4.77	2.76	4.1	95.9	0.0	0.30	1.02	0.79	0.78	2.66	8198	1049	5	0	0	0	0	logfile
✔	9Dii	46906	2025-09-17	2024-09-05	4.0	4.29	4.06	4.1	0.008	0.89	0.0	0.04	27.18	0.00	2.190	46.50	0.00	0.0	0.0	0.0	—	0.83	0.84	—	4.1	0.008	0.92	0.0	0.04	26.42	0.01	2.452	30.72	0.00	0.0	0.0	0.0	—	0.31	0.84	0.85	—	3894	0	2	184	0	0	0	logfile
✔	9DiL	46912	2025-09-17	2024-09-05	3.3	3.74	3.09	3.5	0.003	0.52	0.0	0.04	10.16	0.00	2.211	4.20	1.55	3.8	96.2	0.0	2.06	0.69	0.88	2.33	3.5	0.003	0.64	0.0	0.04	13.99	0.00	2.477	4.81	1.35	3.9	96.0	0.1	1.94	0.60	0.68	0.89	2.08	9783	1236	5	0	4	0	0	logfile
✔	9JFX	61443	2025-09-17	2024-09-05	2.87	2.19	2.93	2.0	0.005	0.76	0.0	0.05	16.45	0.01	2.245	5.82	1.52	5.0	94.6	0.4	-0.14	0.76	0.77	2.43	2.0	0.003	0.58	0.0	0.04	17.20	0.00	2.524	4.25	4.32	3.3	96.7	0.0	0.81	0.40	0.79	0.78	2.14	8154	1053	5	0	0	0	0	logfile
✔	9DiG	46905	2025-09-17	2024-09-05	3.22	3.49	3.26	4.0	0.007	0.76	0.0	0.03	25.27	0.00	2.126	19.21	0.00	0.0	0.0	0.0	—	0.83	0.83	—	4.0	0.007	0.74	0.0	0.04	24.63	0.00	2.153	17.74	0.00	0.0	0.0	0.0	—	0.94	0.83	0.85	—	4066	0	4	192	6	0	0	logfile
✔	9DiR	46916	2025-09-17	2024-09-05	2.97	3.27	3.04	3.3	0.004	0.58	0.0	0.04	12.37	0.00	2.124	10.27	0.00	3.3	96.7	0.0	0.24	0.37	0.56	1.55	3.3	0.003	0.60	0.0	0.04	16.61	0.00	2.492	10.01	3.85	3.2	96.8	0.0	-0.32	1.29	0.48	0.72	2.98	5889	756	2	0	0	0	0	logfile
✔	9GoB	51496	2025-09-18	2024-09-05	3.2	4.17	3.23	3.5	0.008	0.73	0.0	0.05	13.18	0.01	1.947	4.96	0.00	3.9	96.1	0.0	-1.88	0.78	0.88	3.69	3.4	0.005	0.72	0.0	0.04	13.85	0.00	1.863	6.29	0.32	3.0	97.0	0.0	1.58	1.20	0.79	0.90	2.92	14814	1879	11	0	10	0	0	logfile
✔	9Go5	51491	2025-09-18	2024-09-04	2.5	2.73	2.46	2.6	0.004	0.71	0.0	0.05	19.45	0.01	2.037	3.04	2.10	1.6	98.4	0.0	0.07	0.75	0.90	3.99	2.6	0.004	0.61	0.0	0.05	18.19	0.00	1.944	5.22	1.08	1.5	98.5	0.0	2.04	0.31	0.74	0.91	4.00	14930	1850	15	0	10	350	0	logfile
✔	9DHT	46876	2025-09-18	2024-09-04	4.31	4.40	4.35	4.3	0.003	0.66	0.0	0.04	12.37	0.01	2.147	2.94	0.31	5.4	94.3	0.3	-0.97	0.71	0.73	—	4.3	0.004	0.75	0.0	0.04	13.00	0.00	2.391	10.02	0.00	4.0	95.7	0.3	0.29	1.52	0.73	0.77	—	18294	2350	12	0	0	0	0	logfile
✔	9DHS	46875	2025-09-18	2024-09-04	4.48	4.57	4.51	4.5	0.003	0.71	0.0	0.04	12.44	0.01	2.118	3.11	0.20	5.8	93.5	0.7	-1.38	0.68	0.70	—	4.5	0.003	0.71	0.0	0.04	13.49	0.00	2.402	8.77	0.05	4.0	95.7	0.3	0.38	1.36	0.73	0.77	—	18294	2350	12	0	0	0	0	logfile
✔	9JF8	61430	2025-09-17	2024-09-04	3.05	3.21	2.98	3.2	0.005	1.05	2.0	0.07	13.51	0.01	1.759	3.98	0.00	8.7	91.3	0.0	-6.51	0.54	0.82	3.74	3.2	0.004	0.75	0.0	0.04	15.81	0.00	2.499	3.36	3.16	8.9	91.1	0.0	-0.38	0.96	0.52	0.82	3.60	3266	395	2	0	1	0	0	logfile
✔	9DHP	46872	2025-09-18	2024-09-04	4.18	4.33	4.27	4.3	0.003	0.67	0.0	0.04	12.42	0.01	2.218	3.18	0.16	5.8	94.0	0.2	-1.48	0.73	0.80	—	4.3	0.003	0.68	0.0	0.04	13.50	0.00	2.481	5.22	0.00	3.9	96.0	0.0	0.84	1.29	0.73	0.80	—	18069	2328	8	0	0	0	0	logfile
✔	9DHQ	46873	2025-09-18	2024-09-04	4.78	4.82	4.75	4.7	0.003	0.88	0.0	0.04	12.68	0.01	2.205	3.53	0.16	6.7	92.7	0.6	-2.09	0.71	0.76	—	4.7	0.003	0.72	0.0	0.04	13.54	0.00	2.311	7.73	0.00	4.0	95.8	0.2	-0.43	1.61	0.73	0.78	—	18069	2328	8	0	0	0	0	logfile
✔	9Go3	51489	2025-09-17	2024-09-04	3.15	4.71	2.83	3.1	0.003	0.54	0.0	0.04	15.18	0.00	2.215	5.47	0.38	1.5	98.2	0.3	2.64	0.68	0.70	2.22	3.1	0.002	0.55	0.0	0.04	15.06	0.00	2.436	7.53	1.52	2.2	97.8	0.0	3.07	1.44	0.74	0.87	2.48	12187	1771	7	0	0	0	0	logfile

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