Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9DHD	46867	2025-09-17	2024-09-03	2.9	3.41	2.99	3.2	0.006	0.69	0.0	0.05	16.29	0.00	2.433	8.70	1.88	2.9	97.1	0.0	-0.84	0.81	0.86	3.56	3.2	0.003	0.60	0.0	0.04	16.62	0.00	2.412	7.00	1.52	2.8	97.2	0.0	-0.18	0.32	0.83	0.87	3.14	10063	1259	3	0	0	0	0	logfile
✔	9JEE	61414	2025-09-18	2024-09-03	3.51	3.69	3.48	3.6	0.003	0.74	0.0	0.04	18.11	0.00	2.032	10.34	0.00	7.2	92.8	0.0	-2.34	0.67	0.71	1.40	3.6	0.003	0.67	0.0	0.04	18.53	0.00	2.431	9.43	4.06	8.0	92.0	0.0	-0.99	0.48	0.70	0.77	1.30	20660	2448	8	0	24	0	0	logfile
✔	9DH7	46858	2025-09-19	2024-09-03	3.4	3.75	3.62	3.7	0.004	0.63	0.0	0.04	14.47	0.00	1.891	6.99	0.04	1.4	98.6	0.0	2.13	0.72	0.77	1.94	3.7	0.003	0.59	0.0	0.04	16.54	0.00	1.927	6.12	1.46	1.5	98.5	0.0	2.41	0.81	0.75	0.85	1.96	23020	2857	2	0	5	0	0	logfile
✔	9DH5	46856	2025-09-19	2024-09-03	2.6	2.92	2.75	2.9	0.004	0.62	0.0	0.04	14.20	0.01	1.745	6.54	0.00	1.5	98.4	0.1	1.58	0.73	0.81	3.51	2.9	0.003	0.56	0.0	0.04	16.88	0.00	1.981	5.85	1.73	1.3	98.7	0.0	2.18	0.65	0.69	0.85	3.37	23689	2935	2	0	6	0	0	logfile
✔	9DH8	46859	2025-09-19	2024-09-03	3.5	3.83	3.62	3.7	0.004	0.66	0.0	0.04	14.59	0.00	2.108	11.31	0.00	2.7	97.3	0.0	1.36	0.77	0.77	1.72	3.8	0.003	0.63	0.0	0.04	16.54	0.00	2.483	9.69	1.58	2.0	98.0	0.0	1.74	0.77	0.78	0.78	1.19	21847	2709	2	0	4	0	0	logfile
✔	9GNQ	51477	2025-09-17	2024-09-03	2.9	3.52	2.88	3.3	0.011	0.69	0.0	0.05	17.14	0.01	2.084	5.13	0.99	2.8	97.1	0.1	0.45	0.76	0.89	3.67	3.3	0.003	0.65	0.0	0.04	16.09	0.00	2.012	4.91	1.39	2.6	97.4	0.0	1.22	2.02	0.72	0.89	3.49	9309	1166	7	1	4	0	0	logfile
✔	9DHA	46861	2025-09-19	2024-09-03	3.6	4.00	3.82	3.8	0.003	0.62	0.0	0.04	14.92	0.00	1.985	11.01	0.00	2.9	97.1	0.0	1.17	0.82	0.85	1.62	3.8	0.004	0.60	0.0	0.04	16.18	0.00	1.932	8.77	1.11	2.3	97.7	0.0	1.97	1.22	0.82	0.85	1.54	24588	3038	2	0	5	0	0	logfile
✔	9GNR	51478	2025-09-17	2024-09-03	2.92	3.35	2.94	3.2	0.003	0.59	0.0	0.05	18.05	0.00	1.955	9.03	4.98	3.6	96.3	0.1	0.42	0.48	0.88	3.84	3.2	0.003	0.62	0.0	0.05	17.74	0.01	2.021	5.88	1.56	3.3	96.5	0.1	0.62	0.38	0.49	0.90	3.49	6054	792	4	0	3	0	0	logfile
✔	9DH9	46860	2025-09-19	2024-09-03	3.4	3.46	3.32	3.5	0.005	0.83	0.0	0.05	15.96	0.01	1.955	14.35	0.24	3.2	96.7	0.0	0.80	0.75	0.83	1.82	3.5	0.004	0.63	0.0	0.04	17.67	0.00	1.885	8.80	2.16	3.1	96.9	0.1	1.66	0.46	0.77	0.87	1.91	23113	2858	2	0	7	0	0	logfile
✔	9DGi	46828	2025-09-17	2024-09-02	3.35	3.68	3.43	3.7	0.008	1.48	0.0	0.07	13.49	0.01	2.462	1.47	0.99	10.1	89.5	0.4	-8.28	0.46	0.77	2.93	3.7	0.004	0.78	0.0	0.04	14.22	0.01	2.541	0.98	4.43	7.8	92.2	0.0	-5.39	0.55	0.47	0.78	3.03	2048	265	2	0	1	0	0	logfile
✔	9DGG	46823	2025-09-18	2024-09-02	2.98	3.95	3.12	3.3	0.004	0.63	0.0	0.04	27.08	0.01	2.243	8.46	0.26	2.2	97.8	0.0	2.29	0.90	0.88	2.50	3.3	0.004	0.68	0.0	0.03	27.31	0.00	2.501	9.54	2.69	3.3	96.7	0.0	2.50	0.55	0.90	0.89	2.37	13339	959	14	286	4	0	0	logfile
✔	9DG3	46822	2025-09-17	2024-09-01	3.46	4.35	3.61	3.6	0.005	0.79	0.0	0.05	28.10	0.01	2.182	9.07	0.15	2.6	97.4	0.0	1.39	0.92	0.86	1.88	3.6	0.004	0.65	0.0	0.04	27.98	0.00	2.127	10.85	2.13	3.1	96.9	0.0	1.97	0.45	0.92	0.87	1.68	12553	860	13	292	1	0	0	logfile
✔	9JDR	61397	2025-09-17	2024-09-01	3.5	3.86	3.66	4.0	0.008	1.25	5.0	0.06	11.08	0.01	2.246	4.31	0.29	7.2	92.8	0.0	-6.89	0.54	0.73	3.36	4.0	0.003	0.62	0.0	0.04	14.08	0.00	2.605	6.09	1.71	4.3	95.7	0.0	-2.81	0.64	0.52	0.71	1.83	3371	422	1	0	0	0	0	logfile
✔	9JDS	61398	2025-09-17	2024-09-01	3.4	3.56	3.61	3.7	0.009	1.48	15.0	0.17	10.59	0.01	2.228	3.63	1.12	8.0	92.0	0.0	-6.75	0.50	0.75	3.91	3.7	0.003	0.64	0.0	0.04	13.45	0.00	2.574	2.47	3.65	5.4	94.6	0.0	-2.61	0.50	0.47	0.74	2.32	3456	431	2	0	1	2	0	logfile
✔	9JDV	61399	2025-09-17	2024-09-01	3.32	3.91	3.55	3.9	0.013	0.71	0.0	0.03	13.99	0.00	2.150	9.73	2.03	2.8	97.2	0.0	-0.41	0.48	0.66	1.14	3.9	0.003	0.67	0.0	0.04	16.25	0.00	2.307	10.48	3.48	2.6	97.4	0.0	2.22	1.06	0.47	0.73	1.45	3311	435	2	0	1	1	0	logfile
✔	9JE0	61403	2025-09-17	2024-09-01	3.23	3.76	3.35	3.9	0.003	0.58	0.0	0.04	14.22	0.00	2.281	4.93	2.61	2.1	97.9	0.0	-0.32	0.44	0.66	1.06	3.8	0.003	0.68	0.0	0.04	16.17	0.00	2.588	7.46	3.48	2.6	97.4	0.0	2.07	0.95	0.43	0.71	1.10	3321	435	2	0	1	1	0	logfile
✔	9JDB	61387	2025-09-17	2024-08-31	2.64	2.91	2.73	2.9	0.008	1.10	0.0	0.04	18.08	0.00	2.250	4.26	1.41	2.0	98.0	0.0	0.01	0.70	0.87	4.46	2.9	0.003	0.60	0.0	0.04	17.74	0.00	2.610	3.25	0.85	1.1	98.9	0.0	0.50	0.21	0.70	0.86	4.06	6592	808	4	0	2	0	0	logfile
✔	9JDA	61386	2025-09-17	2024-08-31	3.23	3.40	3.13	3.3	0.004	0.61	0.0	0.04	12.99	0.01	2.130	8.38	0.00	2.9	97.1	0.0	-0.46	0.60	0.82	3.83	3.4	0.003	0.60	0.0	0.04	14.87	0.00	2.294	7.59	2.15	2.9	97.1	0.0	1.07	0.42	0.65	0.85	2.77	4417	552	2	0	8	0	0	logfile
✔	9JDJ	61393	2025-09-17	2024-08-31	3.5	3.49	3.35	3.5	0.007	0.90	0.0	0.06	13.19	0.02	2.200	10.27	1.13	1.5	98.5	0.0	0.01	0.54	0.70	2.08	3.5	0.003	0.64	0.0	0.04	15.06	0.00	2.508	11.63	1.47	1.9	98.1	0.0	1.31	1.66	0.63	0.76	1.80	8456	1048	4	0	10	0	0	logfile
✔	9JDM	61396	2025-09-18	2024-08-31	3.13	3.33	3.16	3.3	0.002	0.51	0.0	0.03	19.02	0.00	2.032	6.95	0.00	7.1	92.9	0.0	-1.89	0.67	0.79	2.02	3.4	0.003	0.54	0.0	0.04	18.70	0.00	2.475	6.27	3.81	6.7	93.2	0.2	-0.25	0.33	0.71	0.81	2.20	20992	2440	8	0	28	0	0	logfile

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