Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JDL	61395	2025-09-17	2024-08-31	3.98	4.27	4.02	4.1	0.003	0.58	0.0	0.04	13.09	0.01	2.186	15.79	0.12	3.2	96.8	0.0	0.18	0.57	0.68	0.83	4.1	0.003	0.94	0.0	0.05	15.82	0.00	2.326	18.63	1.86	2.1	97.9	0.0	0.17	1.24	0.58	0.69	0.58	8136	1024	4	0	2	0	0	logfile
✔	9JDM	61396	2025-09-18	2024-08-31	3.13	3.33	3.16	3.3	0.002	0.51	0.0	0.03	19.02	0.00	2.032	6.95	0.00	7.1	92.9	0.0	-1.89	0.67	0.79	2.02	3.4	0.003	0.54	0.0	0.04	18.70	0.00	2.475	6.27	3.81	6.7	93.2	0.2	-0.25	0.33	0.71	0.81	2.20	20992	2440	8	0	28	0	0	logfile
✔	9JD3	61379	2025-09-17	2024-08-30	3.2	3.48	3.28	3.5	0.011	1.22	0.0	0.07	13.32	0.01	1.080	8.12	0.00	3.1	96.7	0.2	-0.02	0.59	0.80	2.71	3.5	0.002	0.56	0.0	0.04	14.45	0.00	2.625	5.49	1.74	2.2	97.8	0.0	1.35	0.35	0.58	0.79	1.93	4496	545	2	0	20	7	0	logfile
✔	9GMZ	51458	2025-09-18	2024-08-30	3.2	3.86	3.43	3.6	0.003	0.64	0.0	0.05	17.08	0.00	1.922	8.94	1.38	2.9	97.1	0.0	1.67	0.83	0.84	2.12	3.6	0.003	0.55	0.0	0.04	17.63	0.00	1.907	7.56	2.09	2.7	97.3	0.0	1.72	1.03	0.84	0.86	2.18	20472	2433	22	32	14	0	0	logfile
✔	9JCV	61377	2025-09-17	2024-08-30	3.41	3.78	3.49	3.7	0.003	0.63	0.0	0.04	13.63	0.00	2.250	10.37	0.00	2.4	97.6	0.0	1.09	0.50	0.73	1.41	3.7	0.004	0.72	0.0	0.05	15.37	0.00	2.545	10.98	0.92	2.4	97.6	0.0	0.95	1.05	0.51	0.75	1.01	4111	512	2	0	4	0	0	logfile
✔	9JCZ	61378	2025-09-17	2024-08-30	2.64	3.06	2.79	3.0	0.004	0.75	0.0	0.04	14.87	0.00	1.897	5.83	0.00	2.9	97.1	0.0	0.88	0.57	0.74	2.43	3.0	0.003	0.64	0.0	0.04	14.42	0.00	2.261	5.95	0.67	2.7	97.3	0.0	1.22	0.48	0.51	0.72	1.66	4364	525	2	0	11	2	0	logfile
✔	9JD9	61385	2025-09-17	2024-08-30	3.05	3.25	2.90	3.2	0.011	0.81	0.0	0.04	13.11	0.00	2.107	8.07	0.43	3.8	96.2	0.0	-0.56	0.54	0.79	3.25	3.2	0.003	0.54	0.0	0.04	14.45	0.00	2.236	5.89	2.14	3.5	96.5	0.0	1.09	1.11	0.55	0.80	2.22	4530	552	2	0	19	2	0	logfile
✔	9JCE	61362	2025-09-17	2024-08-29	3.59	3.76	3.56	3.7	0.004	0.59	0.0	0.04	15.14	0.00	2.244	7.11	0.00	4.9	95.1	0.0	-0.51	0.71	0.81	1.24	3.7	0.003	0.63	0.0	0.04	16.99	0.00	2.497	9.47	3.36	5.8	94.2	0.0	1.20	0.59	0.73	0.82	1.30	5511	695	3	0	9	0	0	logfile
✔	9GML	51450	2025-09-17	2024-08-29	3.12	3.55	3.08	3.5	0.004	0.69	0.0	0.05	17.85	0.00	1.950	10.94	0.31	3.6	96.3	0.1	-0.23	0.51	0.81	2.06	3.5	0.005	0.74	0.0	0.05	17.88	0.00	1.869	8.30	4.98	5.0	94.9	0.1	-0.15	1.04	0.50	0.82	2.22	6052	792	4	0	3	2	0	logfile
✔	9GMX	51457	2025-09-18	2024-08-29	2.82	2.87	2.73	2.9	0.007	0.71	1.0	0.05	16.92	0.01	1.888	4.13	0.54	3.2	96.8	0.0	0.15	0.70	0.86	3.74	2.9	0.003	0.56	0.0	0.04	17.91	0.00	2.054	5.80	1.49	2.2	97.8	0.0	1.08	2.34	0.72	0.87	2.73	14540	1654	7	56	8	0	0	logfile
✔	9GMK	51449	2025-09-18	2024-08-29	3.5	4.09	3.74	3.7	0.004	0.74	0.0	0.04	26.23	0.00	2.126	21.60	0.33	2.0	98.0	0.0	0.41	0.73	0.64	0.36	3.8	0.007	1.04	2.0	0.05	27.83	0.01	2.056	20.38	4.21	2.6	97.2	0.2	1.05	1.62	0.80	0.80	0.58	14643	1081	11	296	0	0	0	logfile
✔	9DER	46794	2025-09-18	2024-08-29	3.9	5.17	4.02	4.0	0.003	0.59	0.0	0.05	15.30	0.00	2.080	5.89	0.90	3.7	96.3	0.0	-0.23	0.86	0.71	0.15	4.1	0.004	0.67	0.0	0.05	11.44	0.00	1.742	13.79	1.41	7.0	93.0	0.0	-0.82	1.79	0.88	0.76	0.19	14207	925	9	0	24	2	6843	logfile
✔	9DDN	46777	2025-09-17	2024-08-28	3.18	4.03	3.42	3.8	0.012	1.62	1.0	0.09	13.46	0.01	2.015	2.87	0.71	1.3	98.7	0.0	-1.07	0.69	0.84	1.92	3.8	0.003	0.81	0.0	0.04	16.93	0.00	2.484	9.43	2.04	1.5	98.5	0.0	2.72	1.47	0.69	0.84	0.76	9470	1206	9	0	0	0	0	logfile
✔	9DDP	46779	2025-09-17	2024-08-28	3.16	3.88	3.28	3.7	0.011	1.61	0.0	0.08	13.13	0.01	2.339	3.28	0.85	0.9	99.1	0.0	0.40	0.78	0.88	2.98	3.7	0.004	0.72	0.0	0.04	16.54	0.00	2.423	8.63	2.88	1.3	98.7	0.0	3.90	1.77	0.79	0.89	1.06	9072	1199	8	0	0	0	0	logfile
✔	9GMD	51448	2025-09-17	2024-08-28	4.0	4.41	4.02	4.2	0.004	0.61	0.0	0.03	16.62	0.01	1.992	9.59	0.19	3.5	96.5	0.0	1.67	0.85	0.78	—	4.2	0.003	0.58	0.0	0.03	17.48	0.00	2.318	6.76	1.86	2.2	97.8	0.0	2.44	0.86	0.85	0.80	—	9919	611	6	0	0	0	4925	logfile
✔	9JC2	61340	2025-09-17	2024-08-28	3.96	6.12	4.29	4.8	0.003	0.62	0.0	0.04	12.39	0.00	2.199	9.17	0.56	1.6	98.3	0.1	4.35	0.61	0.76	0.79	4.9	0.003	0.83	0.0	0.05	12.10	0.00	2.469	13.57	3.56	1.4	98.5	0.1	4.28	0.62	0.61	0.79	0.79	10815	1875	21	0	0	0	0	logfile
✔	9GMB	51447	2025-09-18	2024-08-28	4.2	4.40	4.01	4.1	0.009	0.89	14.0	0.09	16.35	0.01	1.992	9.29	0.51	3.1	96.9	0.0	1.82	0.80	0.69	—	4.1	0.003	0.54	0.0	0.03	13.96	0.00	2.196	4.98	0.00	2.8	97.2	0.0	2.61	1.75	0.84	0.79	—	17867	1111	6	0	0	0	8865	logfile
✔	9DDo	46778	2025-09-17	2024-08-28	2.8	3.75	2.98	3.4	0.011	1.61	0.0	0.08	13.50	0.01	2.442	0.91	0.74	0.5	99.5	0.0	0.89	0.80	0.88	3.52	3.4	0.004	0.74	0.0	0.04	16.43	0.00	2.480	6.78	2.32	1.0	99.0	0.0	4.33	1.03	0.78	0.88	1.91	9252	1209	10	0	2	0	0	logfile
✔	9DDQ	46780	2025-09-17	2024-08-28	3.19	3.99	3.33	3.7	0.011	1.59	0.0	0.08	13.66	0.01	2.368	1.91	0.75	0.7	99.3	0.0	0.35	0.80	0.88	2.20	3.7	0.004	0.76	0.0	0.04	16.86	0.00	2.396	9.56	3.42	0.7	99.3	0.0	4.06	1.08	0.81	0.89	1.30	9069	1199	8	0	0	0	0	logfile
✔	9DDE	46771	2025-09-18	2024-08-28	3.2	4.04	3.22	3.3	0.004	0.65	0.0	0.04	26.36	0.01	2.226	7.35	0.33	2.7	97.3	0.0	1.79	0.88	0.82	2.44	3.3	0.004	0.65	0.0	0.04	26.50	0.00	2.458	7.46	1.78	3.0	97.0	0.0	2.18	0.62	0.92	0.90	1.84	15394	1147	18	324	5	0	0	logfile

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