Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JBR	61323	2025-09-17	2024-08-27	3.4	2.56	3.45	2.1	0.006	0.73	0.0	0.05	12.73	0.01	2.120	15.73	0.00	4.0	95.9	0.1	0.07	0.69	0.65	1.47	2.2	0.003	0.63	0.0	0.04	15.10	0.01	2.526	9.34	2.18	2.2	97.7	0.1	0.95	0.44	0.69	0.68	1.05	7899	1009	1	0	0	0	0	logfile
✔	9JBZ	61331	2025-09-17	2024-08-27	3.67	2.72	3.81	2.9	0.003	0.58	0.0	0.04	11.94	0.00	2.179	11.34	0.00	2.3	97.6	0.1	1.45	0.69	0.71	1.12	2.3	0.003	0.68	0.0	0.04	14.94	0.00	2.361	8.97	2.28	1.8	98.1	0.1	1.05	0.48	0.69	0.70	1.34	7948	1016	1	0	0	0	0	logfile
✔	9JBH	61314	2025-09-17	2024-08-27	2.73	2.92	2.74	3.0	0.004	0.68	0.0	0.04	19.28	0.01	2.248	9.11	1.56	0.9	99.1	0.0	0.77	0.62	0.78	3.07	3.0	0.003	0.63	0.0	0.04	17.79	0.01	2.408	9.45	1.56	1.1	98.9	0.0	1.54	1.20	0.60	0.79	2.76	5724	668	4	0	8	0	0	logfile
✔	9JBi	61315	2025-09-17	2024-08-27	4.49	4.78	4.28	6.0	0.006	1.11	0.0	0.06	13.69	0.01	2.220	11.74	2.70	5.2	94.8	0.0	-2.32	0.54	0.74	—	6.5	0.003	0.70	0.0	0.04	12.78	0.00	2.525	9.30	0.00	2.9	97.1	0.0	1.41	1.63	0.56	0.74	—	7472	1034	2	0	0	0	0	logfile
✔	9JBG	61313	2025-09-17	2024-08-27	3.76	3.93	3.74	3.8	0.006	0.98	0.0	0.06	18.84	0.01	2.222	14.26	1.73	5.5	94.5	0.0	-1.18	0.56	0.74	1.30	3.8	0.004	0.87	0.0	0.05	18.14	0.00	2.536	15.93	3.74	4.7	95.3	0.0	-0.01	1.01	0.57	0.74	1.31	10187	1259	4	0	6	0	0	logfile
✔	9JBJ	61316	2025-09-17	2024-08-27	3.73	3.99	3.75	3.9	0.007	1.09	0.0	0.07	15.72	0.00	2.237	13.71	2.45	3.2	96.8	0.0	-0.95	0.53	0.69	1.56	3.9	0.003	0.77	0.0	0.04	16.34	0.00	2.424	12.33	3.36	1.7	98.3	0.0	0.48	0.96	0.54	0.70	1.14	7193	955	2	0	0	0	0	logfile
✔	9JBF	61312	2025-09-17	2024-08-27	3.21	3.43	2.40	3.6	0.004	0.68	0.0	0.04	21.15	0.00	2.196	12.67	0.33	3.0	97.0	0.0	0.69	0.62	0.82	2.22	3.6	0.003	0.61	0.0	0.04	18.21	0.00	2.385	11.35	2.82	2.3	97.7	0.0	1.68	0.98	0.64	0.82	1.94	11718	1382	4	0	18	0	0	logfile
✔	9JBo	61321	2025-09-17	2024-08-27	3.39	3.02	2.39	3.3	0.005	0.76	0.0	0.05	18.29	0.00	2.444	13.61	0.00	6.1	93.9	0.0	-3.03	0.38	0.71	2.65	3.3	0.002	0.62	0.0	0.05	18.81	0.00	2.614	6.41	2.42	9.8	90.2	0.0	-2.06	1.01	0.40	0.74	1.60	1872	258	3	0	0	0	0	logfile
✔	9JBX	61329	2025-09-17	2024-08-27	3.87	3.14	4.08	2.0	0.003	0.70	0.0	0.04	12.22	0.01	2.056	15.51	0.00	3.1	96.8	0.1	0.74	0.64	0.67	0.64	2.1	0.004	0.76	0.0	0.05	14.88	0.00	2.368	12.71	3.08	3.4	96.5	0.1	0.48	0.60	0.65	0.68	0.57	7948	1016	1	0	0	0	0	logfile
✔	9JBM	61319	2025-09-17	2024-08-27	3.83	2.93	3.89	3.3	0.005	1.20	0.0	0.06	11.97	0.01	2.181	17.24	0.00	3.3	96.5	0.2	0.41	0.70	0.70	1.37	3.0	0.003	0.77	0.0	0.04	15.33	0.01	2.512	12.67	3.45	2.3	97.6	0.1	0.71	1.09	0.71	0.72	1.71	8588	1089	2	0	22	0	0	logfile
✔	9JB1	61304	2025-09-17	2024-08-26	2.5	2.55	2.32	2.6	0.001	0.60	0.0	0.06	19.34	0.00	2.660	7.64	0.00	0.0	100.0	0.0	-0.86	0.66	0.90	6.53	2.6	0.004	0.56	0.0	0.06	18.87	0.00	2.639	4.65	1.74	2.0	98.0	0.0	-1.26	0.88	0.66	0.91	7.50	3012	396	24	0	12	0	0	logfile
✔	9DCH	46751	2025-09-19	2024-08-26	3.4	4.00	3.31	2.5	0.002	0.68	2.0	0.04	14.77	0.01	2.207	9.48	2.18	8.2	91.7	0.2	-1.21	0.65	0.47	0.55	2.4	0.003	0.72	0.0	0.04	15.40	0.00	2.449	11.00	3.53	9.7	90.1	0.2	-1.62	1.10	0.74	0.60	1.18	24433	3586	15	10	14	0	0	logfile
✔	9JB2	61305	2025-09-17	2024-08-26	2.9	2.11	2.74	3.0	0.003	0.43	0.0	0.05	12.57	0.00	2.256	5.78	0.27	0.9	99.1	0.0	-2.12	0.45	0.82	4.81	3.0	0.003	0.48	0.0	0.05	17.00	0.00	2.626	4.88	2.70	0.5	99.5	0.0	-2.27	0.29	0.40	0.81	4.85	3890	500	35	0	20	0	0	logfile
✔	9JB0	61303	2025-09-17	2024-08-26	2.9	3.06	2.31	3.1	0.004	0.40	0.0	0.06	18.89	0.00	2.623	6.97	0.69	6.9	93.1	0.0	-0.14	0.62	0.87	7.08	3.1	0.004	0.48	0.0	0.06	18.56	0.00	2.620	8.30	0.35	5.2	94.8	0.0	-0.36	0.86	0.60	0.87	7.08	3012	396	24	0	12	0	0	logfile
✔	9JAZ	61302	2025-09-17	2024-08-26	3.0	3.25	2.18	3.3	0.004	0.52	0.0	0.05	15.94	0.00	2.622	5.31	0.00	3.4	96.6	0.0	-0.70	0.56	0.87	7.33	3.3	0.005	0.58	0.0	0.06	16.93	0.00	2.680	6.81	3.12	4.0	96.0	0.0	-0.75	0.28	0.51	0.86	7.24	3012	396	24	0	12	0	0	logfile
✔	9GKM	51429	2025-09-17	2024-08-25	3.69	2.37	3.69	2.1	0.003	0.50	0.0	0.04	13.90	0.00	2.216	6.25	0.00	5.2	94.8	0.0	0.90	0.74	0.72	1.35	2.0	0.005	0.65	0.0	0.04	15.55	0.01	2.400	6.74	1.57	6.8	93.2	0.0	0.36	0.34	0.75	0.74	1.39	11231	1446	5	0	1	0	0	logfile
✔	9JAQ	61300	2025-09-17	2024-08-25	2.99	3.16	2.98	3.2	0.005	0.63	0.0	0.04	14.52	0.00	2.200	9.72	0.29	7.7	91.8	0.5	-3.44	0.71	0.79	3.90	3.2	0.003	0.64	0.0	0.04	17.24	0.00	2.542	7.20	3.08	5.5	94.5	0.0	-0.47	1.95	0.67	0.80	3.27	5998	736	2	0	0	0	0	logfile
✔	9JAo	61296	2025-09-18	2024-08-25	3.1	3.42	3.09	3.2	0.006	0.71	0.0	0.04	24.27	0.00	1.011	12.06	0.19	2.8	97.1	0.1	0.25	0.78	0.72	1.72	3.2	0.006	0.70	0.0	0.04	24.86	0.00	1.999	8.70	1.53	3.8	96.2	0.0	1.51	1.21	0.87	0.84	1.29	13916	1200	11	208	3	0	0	logfile
✔	9JA6	61291	2025-09-17	2024-08-24	4.4	3.40	4.32	5.3	0.008	0.94	0.0	0.04	16.51	0.00	2.211	19.59	9.56	2.8	97.2	0.0	-1.98	0.69	0.60	—	5.2	0.003	0.58	0.0	0.04	13.35	0.00	2.391	7.46	0.00	1.0	99.0	0.0	3.44	1.27	0.71	0.76	—	4880	588	4	0	0	0	0	logfile
✔	9DBY	46728	2025-09-18	2024-08-24	2.8	3.83	2.82	2.8	0.004	0.67	0.0	0.04	26.42	0.00	2.249	7.40	0.23	2.6	97.4	0.0	2.14	0.86	0.74	0.79	2.9	0.005	0.68	0.0	0.04	26.34	0.00	2.463	7.44	1.29	3.4	96.6	0.0	2.19	0.92	0.93	0.90	1.88	14368	1081	17	296	5	0	0	logfile

• ← previous
• Page 47 of 600
• next →