Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9DAZ	46708	2025-09-18	2024-08-23	2.5	2.75	2.55	2.8	0.002	0.48	0.0	0.04	9.52	0.00	2.245	2.21	0.74	2.1	97.9	0.0	0.74	0.73	0.83	5.26	2.8	0.004	0.63	0.0	0.05	13.47	0.00	2.483	3.38	1.84	2.4	97.6	0.0	0.54	0.29	0.71	0.82	4.86	15074	1926	20	0	30	220	0	logfile
✔	9DB0	46709	2025-09-19	2024-08-23	2.5	2.67	2.55	2.8	0.006	0.82	3.0	0.06	14.16	0.01	2.097	2.39	1.38	1.3	98.6	0.1	0.67	0.75	0.87	4.28	2.8	0.002	0.54	0.0	0.04	12.64	0.00	2.556	2.98	1.60	1.8	98.2	0.0	0.52	1.05	0.74	0.86	4.11	24012	2988	48	0	126	141	0	logfile
✔	9DB1	46710	2025-09-17	2024-08-23	3.2	3.34	3.14	3.3	0.003	0.58	0.0	0.04	9.17	0.00	2.340	2.37	1.20	2.0	98.0	0.0	-0.54	0.68	0.82	4.66	3.3	0.005	0.60	0.0	0.05	11.16	0.00	2.603	1.84	2.40	4.9	95.1	0.0	-0.21	0.27	0.70	0.84	4.37	2039	249	6	0	12	0	0	logfile
✔	9DBE	46716	2025-09-17	2024-08-23	2.4	2.55	2.39	2.5	0.003	0.62	0.0	0.05	10.74	0.00	2.258	2.96	1.51	3.3	96.7	0.0	0.06	0.68	0.85	6.37	2.5	0.003	0.61	0.0	0.05	13.13	0.00	2.547	2.71	2.51	2.9	97.1	0.0	0.19	1.02	0.67	0.85	5.76	2150	245	8	0	15	28	0	logfile
✔	9DBQ	46724	2025-09-17	2024-08-23	2.9	3.52	2.90	3.5	0.003	0.56	0.0	0.04	12.63	0.00	2.057	2.92	0.10	2.2	97.8	0.0	1.15	0.67	0.73	1.85	3.5	0.003	0.59	0.0	0.04	14.88	0.00	2.415	6.82	2.10	2.5	97.5	0.0	2.25	1.40	0.68	0.74	1.28	10062	1182	4	0	20	0	0	logfile
✔	9J9Z	61285	2025-09-17	2024-08-23	2.97	3.16	3.04	3.2	0.004	0.71	0.0	0.04	17.54	0.01	1.888	17.38	0.21	4.4	95.5	0.1	-0.20	0.52	0.69	1.99	3.2	0.005	0.75	0.0	0.04	17.29	0.00	2.493	14.03	4.29	5.8	94.2	0.0	-0.05	0.43	0.53	0.70	2.25	8820	1146	5	0	1	0	0	logfile
✔	9JA0	61286	2025-09-18	2024-08-23	3.14	3.38	3.16	3.4	0.003	0.67	0.0	0.04	11.92	0.01	2.319	8.79	0.00	2.8	97.2	0.0	-4.28	0.75	0.86	3.05	3.4	0.003	0.53	0.0	0.04	14.24	0.00	2.638	4.85	1.75	4.4	95.6	0.0	0.65	0.93	0.72	0.85	2.57	19716	2628	12	0	0	0	0	logfile
✔	9J98	61255	2025-09-17	2024-08-22	3.33	3.60	3.39	3.6	0.010	1.10	12.0	0.07	19.13	0.02	2.236	14.07	8.66	10.3	89.4	0.3	-3.04	0.60	0.84	1.66	3.6	0.003	0.59	0.0	0.04	16.72	0.00	2.610	7.22	5.82	7.1	92.6	0.3	0.96	0.49	0.57	0.83	1.80	6752	794	4	0	4	0	0	logfile
✔	9DAK	46691	2025-09-17	2024-08-22	2.4	2.74	2.43	2.6	0.014	1.29	0.0	0.09	13.17	0.00	1.935	1.68	0.47	1.5	98.5	0.0	0.51	0.78	0.84	4.93	2.6	0.003	0.68	0.0	0.05	14.04	0.00	2.347	1.98	0.94	1.0	99.0	0.0	1.97	0.44	0.74	0.85	4.15	7303	899	13	0	23	144	0	logfile
✔	9GJU	51403	2025-09-18	2024-08-22	2.8	2.29	—	2.7	0.002	0.47	0.0	0.04	15.98	0.00	1.865	5.75	0.95	1.5	98.4	0.1	1.92	0.85	0.84	2.69	2.7	0.004	0.55	0.0	0.04	16.71	0.00	1.958	4.79	2.46	1.4	98.6	0.1	2.22	0.93	0.86	0.88	2.98	20935	2540	8	21	4	0	0	logfile
✔	9J97	61254	2025-09-17	2024-08-22	3.3	3.54	3.13	3.6	0.014	1.86	15.0	0.09	19.36	0.01	2.155	12.71	12.25	6.8	92.2	0.9	-4.11	0.68	0.86	2.08	3.6	0.003	0.66	0.0	0.04	16.77	0.00	2.600	4.16	4.32	4.1	95.9	0.0	0.26	0.45	0.61	0.84	2.88	6704	786	4	0	6	0	0	logfile
✔	9DAX	46701	2025-09-17	2024-08-22	3.3	3.53	3.10	3.6	0.010	1.23	3.0	0.07	17.64	0.01	0.912	17.62	0.72	4.5	95.1	0.4	-2.15	0.60	0.66	2.32	3.6	0.004	0.82	0.0	0.05	17.64	0.01	1.926	13.73	2.59	5.8	94.0	0.1	-2.08	1.37	0.62	0.68	1.83	6401	825	4	0	7	6	0	logfile
✔	9DAo	46695	2025-09-17	2024-08-22	2.8	3.05	2.81	3.1	0.008	0.97	0.0	0.05	16.57	0.01	1.978	6.22	2.59	4.5	95.4	0.2	-0.40	0.66	0.82	3.69	3.1	0.004	0.69	0.0	0.05	16.66	0.01	1.984	4.76	3.06	4.5	95.4	0.2	-0.48	0.33	0.67	0.85	3.80	9804	1264	6	0	6	0	0	logfile
✔	9J8P	61237	2025-09-17	2024-08-21	3.21	3.65	—	1.5	0.007	0.90	0.0	0.05	20.97	0.01	2.235	10.53	0.00	5.4	94.6	0.0	-0.46	0.92	0.83	1.79	1.5	0.004	0.77	0.0	0.04	21.71	0.00	2.266	14.52	1.74	4.1	95.9	0.0	0.04	2.87	0.93	0.87	1.49	7061	623	3	106	1	0	0	logfile
✔	9D98	46670	2025-09-18	2024-08-21	4.19	4.40	4.15	4.4	0.005	1.08	0.0	0.06	15.31	0.01	2.288	5.01	0.15	6.0	93.8	0.3	-2.03	0.66	0.75	—	4.4	0.008	0.95	0.0	0.05	14.49	0.01	2.312	13.83	0.10	8.8	90.9	0.3	-1.76	1.26	0.69	0.76	—	19100	2441	18	0	15	0	0	logfile
✔	9J8Z	61249	2025-09-17	2024-08-21	3.36	4.09	3.52	3.9	0.004	0.79	0.0	0.05	17.03	0.01	2.128	12.58	1.42	5.4	94.6	0.0	-0.36	0.66	0.79	1.74	3.9	0.003	0.66	0.0	0.04	17.01	0.00	2.518	6.79	4.70	4.3	95.7	0.0	0.38	1.23	0.70	0.84	1.53	8611	1121	5	0	0	0	0	logfile
✔	9J8M	61231	2025-09-18	2024-08-21	3.82	4.29	3.81	3.8	0.003	0.52	0.0	0.03	26.32	0.00	2.264	5.47	1.49	0.9	99.1	0.0	3.02	0.83	0.75	1.17	3.9	0.007	0.70	0.0	0.04	27.38	0.00	2.391	11.25	2.07	2.9	97.1	0.0	2.40	0.72	0.91	0.85	1.39	15831	1047	13	368	0	0	0	logfile
✔	9J8B	61226	2025-09-17	2024-08-21	3.9	4.08	3.83	4.0	0.003	0.64	0.0	0.04	14.29	0.00	2.219	9.07	0.00	6.6	93.4	0.0	0.04	0.58	0.81	1.05	4.0	0.003	0.67	0.0	0.04	16.85	0.00	2.588	6.53	1.14	6.9	93.1	0.0	0.78	1.31	0.58	0.82	0.97	4158	524	1	0	0	0	0	logfile
✔	9D90	46655	2025-09-19	2024-08-20	3.91	4.13	3.87	4.1	0.005	1.02	0.0	0.06	15.81	0.01	2.258	4.78	0.11	5.7	94.2	0.1	-1.83	0.74	0.81	1.37	4.1	0.004	0.78	0.0	0.05	16.54	0.00	2.402	10.27	3.39	5.8	94.2	0.0	-0.92	0.51	0.75	0.83	1.55	24524	3151	27	0	18	0	0	logfile
✔	9D8Y	46653	2025-09-19	2024-08-20	4.06	4.25	4.08	4.2	0.005	1.00	0.0	0.06	15.18	0.01	2.268	4.25	0.10	6.2	93.8	0.1	-1.95	0.67	0.73	—	4.2	0.003	0.73	0.0	0.05	14.16	0.00	2.491	7.78	0.00	6.3	93.6	0.1	-1.00	0.51	0.68	0.76	—	18800	2384	21	0	19	0	0	logfile

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