Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9D90	46655	2025-09-19	2024-08-20	3.91	4.13	3.87	4.1	0.005	1.02	0.0	0.06	15.81	0.01	2.258	4.78	0.11	5.7	94.2	0.1	-1.83	0.74	0.81	1.37	4.1	0.004	0.78	0.0	0.05	16.54	0.00	2.402	10.27	3.39	5.8	94.2	0.0	-0.92	0.51	0.75	0.83	1.55	24524	3151	27	0	18	0	0	logfile
✔	9J7V	61211	2025-09-17	2024-08-19	3.3	3.54	3.37	3.6	0.007	0.97	0.0	0.04	16.85	0.00	2.210	2.17	0.00	4.6	95.4	0.0	1.94	0.60	0.84	1.45	3.6	0.003	0.49	0.0	0.04	16.11	0.00	2.633	1.67	0.65	3.1	96.9	0.0	1.99	0.26	0.59	0.85	1.69	2975	352	2	0	8	0	0	logfile
✔	9J7M	61207	2025-09-17	2024-08-19	2.82	3.08	2.92	3.1	0.006	0.82	0.0	0.06	15.91	0.01	2.205	4.34	3.43	3.0	97.0	0.0	1.19	0.62	0.87	3.49	3.1	0.002	0.48	0.0	0.04	14.99	0.00	2.319	3.15	2.58	2.4	97.6	0.0	1.85	0.88	0.52	0.82	3.17	4552	543	2	0	12	15	0	logfile
✔	9GiX	51380	2025-09-17	2024-08-19	3.65	3.92	3.56	3.9	0.007	0.89	0.0	0.07	12.01	0.01	2.488	0.92	0.00	0.9	99.1	0.0	0.66	0.57	0.77	2.38	3.8	0.003	0.66	0.0	0.04	16.43	0.00	2.631	6.82	4.64	0.9	99.1	0.0	2.73	1.40	0.62	0.79	1.22	2733	344	3	0	0	0	0	logfile
✔	9D8P	46645	2025-09-17	2024-08-19	3.2	3.70	3.12	3.5	0.003	0.48	0.0	0.04	15.51	0.00	2.213	9.90	0.00	2.1	97.9	0.0	0.36	0.80	0.84	3.38	3.5	0.003	0.53	0.0	0.04	15.74	0.00	2.504	6.52	3.39	2.3	97.7	0.0	0.10	0.18	0.80	0.85	3.21	4073	537	4	0	0	0	0	logfile
✔	9J7N	61208	2025-09-17	2024-08-19	3.14	3.44	3.25	3.5	0.006	0.83	1.0	0.06	17.16	0.01	2.229	6.75	2.16	4.5	95.5	0.0	0.85	0.47	0.79	2.15	3.5	0.003	0.53	1.0	0.04	16.89	0.00	2.612	4.25	3.23	3.9	96.1	0.0	1.20	0.25	0.55	0.84	2.22	4517	544	3	0	11	5	0	logfile
✔	9J7o	61209	2025-09-17	2024-08-19	2.77	2.99	2.82	3.0	0.006	0.79	0.0	0.05	16.11	0.01	2.292	5.95	5.31	2.3	97.7	0.0	0.97	0.63	0.86	2.66	3.0	0.003	0.56	0.0	0.04	15.71	0.00	2.628	3.66	2.65	1.7	98.3	0.0	1.50	0.34	0.62	0.87	2.72	4344	533	2	0	6	10	0	logfile
✔	9GiK	51373	2025-09-17	2024-08-19	3.58	3.80	3.59	3.7	0.003	0.51	0.0	0.04	8.97	0.00	2.248	5.13	2.23	3.5	96.5	0.0	-0.63	0.81	0.85	3.12	3.7	0.004	0.61	0.0	0.04	12.62	0.00	2.553	6.65	1.88	4.3	95.7	0.0	-0.26	0.99	0.82	0.85	2.48	5321	639	1	0	0	0	0	logfile
✔	9GiM	51374	2025-09-17	2024-08-19	4.11	4.26	4.07	4.1	0.002	0.48	0.0	0.04	10.04	0.00	2.242	9.22	1.71	6.6	93.2	0.2	-0.64	0.80	0.80	—	4.1	0.003	0.58	0.0	0.04	11.97	0.00	2.596	7.32	0.00	5.8	94.0	0.2	-1.05	0.93	0.81	0.80	—	5321	639	1	0	0	0	0	logfile
✔	9J7L	61206	2025-09-18	2024-08-19	2.89	3.15	2.87	3.1	0.004	0.52	0.0	0.04	13.83	0.00	2.152	11.14	0.06	3.8	96.2	0.0	-0.21	0.76	0.86	3.73	3.0	0.003	0.55	0.0	0.04	15.90	0.00	2.233	8.45	1.64	3.6	96.4	0.0	0.09	1.24	0.76	0.88	3.79	15720	1968	7	0	0	0	0	logfile
✔	9GiU	51377	2025-09-17	2024-08-19	2.8	3.12	2.79	3.2	0.003	0.53	0.0	0.04	15.79	0.00	2.230	6.94	0.00	1.6	98.4	0.0	2.05	0.56	0.81	4.02	3.2	0.004	0.58	0.0	0.04	15.58	0.00	2.615	5.62	2.69	1.8	98.2	0.0	1.98	0.78	0.56	0.81	4.02	4127	493	2	0	8	17	0	logfile
✔	9J7C	61201	2025-09-17	2024-08-18	3.0	3.30	3.01	3.3	0.005	0.89	4.0	0.05	15.07	0.02	2.235	6.26	0.63	5.9	93.8	0.3	-4.19	0.62	0.85	2.34	3.3	0.003	0.65	0.0	0.04	14.85	0.00	2.570	3.55	2.00	4.6	95.4	0.0	-1.34	0.98	0.70	0.89	3.13	9252	1192	6	0	9	6	0	logfile
✔	9D85	46630	2025-09-17	2024-08-18	3.59	3.91	3.63	3.5	0.005	1.21	6.0	0.08	21.01	0.02	0.994	27.09	0.33	6.4	93.4	0.1	-1.10	0.68	0.44	0.21	3.6	0.004	0.86	0.0	0.05	21.68	0.00	2.307	18.09	3.09	4.9	95.1	0.0	-1.32	1.65	0.74	0.58	0.88	7201	739	5	65	0	0	0	logfile
✔	9D84	46628	2025-09-18	2024-08-18	2.4	2.91	2.25	3.0	0.005	0.73	0.0	0.05	14.82	0.00	1.924	22.28	1.25	3.1	96.8	0.1	0.12	0.64	0.45	0.64	2.7	0.005	0.69	0.0	0.05	16.40	0.00	2.409	11.76	2.40	2.7	97.3	0.0	-0.08	1.53	0.87	0.93	4.56	19029	2529	6	0	0	0	0	logfile
✔	9D81	46624	2025-09-18	2024-08-18	2.4	3.06	2.43	3.0	0.008	0.89	3.0	0.05	14.87	0.01	1.518	75.25	1.41	3.9	95.5	0.6	-0.83	0.66	0.47	0.36	2.9	0.004	0.78	0.0	0.05	16.61	0.01	1.336	15.35	1.74	4.8	94.7	0.5	-1.34	2.00	0.82	0.88	4.06	14475	1875	3	0	0	0	0	logfile
✔	9J7B	61200	2025-09-18	2024-08-18	4.12	4.43	4.20	4.2	0.003	0.61	0.0	0.04	14.97	0.00	2.190	10.64	0.00	5.5	94.5	0.0	-1.08	0.80	0.69	—	4.2	0.003	0.68	0.0	0.04	14.66	0.00	2.343	15.90	0.00	6.5	93.5	0.0	-0.16	1.11	0.83	0.78	—	20578	2679	11	0	21	0	0	logfile
✔	9J7D	61202	2025-09-17	2024-08-18	2.8	3.07	2.81	3.1	0.004	0.69	0.0	0.04	16.17	0.02	2.228	4.84	0.21	3.9	95.9	0.2	-0.46	0.56	0.81	2.15	3.1	0.006	0.74	0.0	0.05	16.45	0.01	2.505	2.82	3.16	4.8	95.2	0.0	0.22	0.37	0.63	0.86	2.16	9222	1194	6	0	7	4	0	logfile
✔	9J7A	61199	2025-09-17	2024-08-18	4.13	4.32	4.10	4.2	0.003	0.66	0.0	0.04	14.85	0.01	2.244	8.46	0.08	6.4	93.6	0.0	-0.81	0.74	0.78	—	4.2	0.004	0.70	0.0	0.04	14.82	0.00	2.499	15.38	0.00	7.3	92.7	0.0	0.21	0.68	0.75	0.80	—	11036	1389	6	0	22	0	0	logfile
✔	9J6X	61188	2025-09-18	2024-08-17	2.4	2.57	2.47	2.6	0.003	0.54	0.0	0.04	16.82	0.00	2.520	3.29	1.87	3.1	96.9	0.0	0.35	0.68	0.86	4.24	2.6	0.002	0.52	0.0	0.04	16.85	0.00	2.486	3.65	2.09	2.7	97.3	0.0	0.69	0.88	0.72	0.89	4.17	16969	2156	3	0	0	0	0	logfile
✔	9D7H	46605	2025-09-18	2024-08-16	3.59	3.87	3.62	3.9	0.006	1.03	1.0	0.06	16.05	0.01	2.267	2.87	0.06	4.6	95.4	0.0	-2.25	0.73	0.83	2.44	3.8	0.003	0.69	0.0	0.05	14.43	0.00	2.025	4.87	2.08	4.7	95.3	0.0	-0.78	3.26	0.74	0.83	2.42	16948	2018	38	0	84	0	0	logfile

• ← previous
• Page 49 of 600
• next →