Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XN2	38495	2024-10-11	2023-12-28	2.79	2.29	2.72	2.9	0.004	0.63	0.0	0.06	14.75	0.01	2.206	7.92	0.00	3.3	96.7	0.0	1.32	0.63	0.64	1.62	3.0	0.003	0.72	0.0	0.04	16.52	0.00	2.295	9.65	1.44	3.3	96.7	0.0	0.92	0.72	0.74	0.75	1.53	6527	791	4	0	9	0	0	logfile
✔	8XM7	38466	2024-10-14	2023-12-27	4.91	3.77	4.50	7.7	0.007	1.01	0.0	0.05	14.71	0.01	2.009	51.04	0.00	11.1	88.9	0.0	-2.89	0.86	0.80	—	7.7	0.004	0.77	0.0	0.05	14.79	0.01	1.989	22.88	0.00	7.1	92.9	0.0	-1.31	0.57	0.86	0.79	—	17190	2123	4	0	2	0	0	logfile
✔	8XLN	38454	2024-10-11	2023-12-26	3.78	3.92	3.75	3.8	0.004	0.65	0.0	0.04	17.14	0.00	2.162	7.15	0.00	6.2	93.8	0.0	0.46	0.78	0.81	1.72	3.8	0.002	0.60	0.0	0.04	16.27	0.00	2.495	4.82	1.01	5.2	94.8	0.0	0.55	0.38	0.79	0.82	1.37	6593	789	8	0	15	0	0	logfile
✔	8RK9	19265	2024-10-10	2023-12-23	3.95	3.73	3.78	20.0	0.002	0.67	0.0	0.05	15.38	0.00	2.268	15.65	0.00	12.8	87.2	0.0	-3.79	0.16	0.00	1.69	7.8	0.003	0.77	0.0	0.05	16.84	0.01	2.538	15.49	3.53	7.1	92.9	0.0	-3.47	4.08	0.30	0.09	0.60	6138	816	6	0	0	0	0	logfile
✔	8RKA	19266	2024-10-10	2023-12-23	3.12	3.09	3.24	3.1	0.002	0.49	0.0	0.04	13.37	0.00	2.094	8.66	0.00	4.5	95.5	0.0	2.40	0.74	0.69	0.79	3.0	0.003	0.58	0.0	0.04	16.64	0.00	2.395	6.34	2.12	4.0	96.0	0.0	2.24	1.09	0.83	0.86	2.36	50484	6504	24	0	0	0	0	logfile
✔	8RK4	19259	2024-10-10	2023-12-23	4.74	6.78	6.17	3.7	0.003	0.72	0.0	0.05	11.12	0.00	0.920	21.20	0.00	4.0	95.7	0.3	-1.38	0.94	0.75	—	3.8	0.002	0.65	0.0	0.04	11.91	0.00	2.570	9.10	0.00	4.0	95.7	0.3	-0.96	0.95	0.94	0.72	—	8373	1119	3	0	0	0	0	logfile
✔	8RK8	19264	2024-10-12	2023-12-23	3.88	3.77	3.91	4.0	0.003	0.55	0.0	0.05	14.93	0.01	0.476	17.22	0.00	3.2	96.8	0.0	0.36	0.71	0.64	0.77	4.0	0.047	1.13	0.0	0.05	16.96	0.01	2.284	25.27	5.13	4.3	95.7	0.0	-0.52	1.27	0.78	0.84	1.16	11226	1512	6	0	0	0	0	logfile
✔	8RKB	19267	2024-10-10	2023-12-23	3.12	2.74	3.26	3.0	0.003	0.50	0.0	0.03	13.64	0.00	0.214	21.59	0.00	4.5	95.4	0.2	2.03	0.65	0.68	0.98	2.9	0.003	0.64	0.0	0.04	16.90	0.00	2.455	6.30	2.27	4.5	95.3	0.2	1.71	0.94	0.77	0.85	2.55	50484	6504	24	0	0	0	0	logfile
✔	8RK0	19254	2024-10-10	2023-12-22	3.38	4.52	3.57	4.1	0.005	0.92	0.0	0.06	23.31	0.01	2.111	16.47	0.14	12.9	87.1	0.0	-2.41	0.73	0.81	1.31	4.1	0.003	0.83	0.0	0.05	14.18	0.01	2.272	11.92	5.10	12.7	87.3	0.0	-2.24	0.40	0.73	0.81	1.22	6940	812	24	0	46	0	0	logfile
✔	8VFX	43193	2024-10-13	2023-12-22	2.65	3.26	2.73	3.1	0.005	0.64	0.0	0.04	24.47	0.00	2.067	1.29	0.39	1.8	98.2	0.0	2.04	0.80	0.83	4.19	3.1	0.004	0.61	0.0	0.04	26.77	0.00	2.507	5.11	2.22	1.8	98.2	0.0	2.06	0.42	0.84	0.87	3.45	16124	1222	12	316	0	0	0	logfile
✔	8VFY	43194	2024-10-13	2023-12-22	2.89	3.58	2.87	3.2	0.005	0.68	0.0	0.04	26.42	0.00	2.203	1.42	0.27	1.7	98.1	0.1	2.05	0.88	0.85	2.26	3.2	0.004	0.65	0.0	0.03	28.08	0.00	2.400	7.36	1.62	2.1	97.8	0.1	2.28	1.41	0.88	0.85	1.74	14046	881	11	342	0	0	0	logfile
✔	8VFZ	43195	2024-10-13	2023-12-22	4.1	4.63	4.39	4.2	0.005	0.68	0.0	0.04	25.93	0.01	2.063	1.78	1.20	2.0	97.7	0.3	3.06	0.82	0.78	—	4.2	0.008	0.86	0.0	0.05	27.59	0.01	2.337	24.55	0.00	4.5	95.3	0.2	0.35	2.79	0.84	0.83	—	14906	984	12	342	0	0	0	logfile
✔	8VG0	43196	2024-10-12	2023-12-22	3.07	3.70	3.12	3.5	0.005	0.71	0.0	0.04	27.18	0.00	2.082	1.11	0.00	0.9	99.1	0.0	2.77	0.80	0.82	2.89	3.5	0.005	0.59	0.0	0.03	27.96	0.00	2.541	5.36	1.46	1.7	98.3	0.0	3.11	0.29	0.83	0.85	2.38	13042	823	12	318	1	0	0	logfile
✔	8VG1	43197	2024-10-13	2023-12-22	2.48	3.12	2.46	2.9	0.005	0.68	0.0	0.04	26.21	0.00	2.351	0.69	0.51	1.3	98.6	0.1	2.20	0.82	0.85	3.37	2.9	0.005	0.61	0.0	0.04	27.92	0.00	2.435	4.68	1.91	1.8	98.1	0.1	2.38	0.30	0.82	0.85	3.17	14434	930	13	342	1	0	0	logfile
✔	8VG2	43198	2024-10-13	2023-12-22	3.04	3.43	3.01	3.2	0.004	0.63	0.0	0.04	25.72	0.00	2.219	0.78	0.25	1.7	98.2	0.1	2.46	0.86	0.89	3.91	3.2	0.004	0.58	0.0	0.03	27.51	0.00	2.529	3.62	1.24	2.5	97.4	0.1	2.64	0.26	0.87	0.90	3.33	15689	965	12	392	0	0	0	logfile
✔	8XJN	38402	2024-10-11	2023-12-21	3.06	3.28	3.09	3.2	0.004	0.43	0.0	0.04	10.30	0.00	2.207	4.41	0.85	1.6	98.4	0.0	0.92	0.66	0.82	3.85	3.2	0.006	0.64	0.0	0.04	14.33	0.00	2.425	6.34	2.43	2.2	97.8	0.0	1.46	0.60	0.68	0.84	2.92	8948	1164	6	0	1	0	0	logfile
✔	8RJJ	19243	2024-10-10	2023-12-21	3.55	4.74	3.73	4.2	0.005	0.88	0.0	0.06	22.55	0.00	2.086	18.05	0.24	12.0	88.0	0.0	-1.62	0.74	0.81	1.22	4.2	0.003	0.79	0.0	0.05	14.69	0.00	2.280	13.43	3.85	11.9	88.1	0.0	-1.28	0.90	0.74	0.81	1.47	8672	1078	24	0	46	0	0	logfile
✔	8XJM	38401	2024-10-10	2023-12-21	2.85	3.04	2.79	3.0	0.003	0.42	0.0	0.04	10.25	0.00	2.256	4.68	1.05	1.3	98.7	0.0	1.55	0.67	0.82	4.65	3.0	0.003	0.54	0.0	0.04	14.74	0.00	2.440	5.71	2.22	1.6	98.4	0.0	2.22	0.53	0.68	0.83	3.80	8849	1140	6	0	1	0	0	logfile
✔	8XJL	38400	2024-10-10	2023-12-21	2.77	2.89	2.74	2.9	0.004	0.48	0.0	0.04	10.36	0.00	2.225	5.03	1.05	1.1	98.9	0.0	1.28	0.70	0.80	3.93	2.9	0.002	0.54	0.0	0.04	14.58	0.00	2.382	5.14	1.69	1.6	98.4	0.0	2.17	0.59	0.67	0.79	2.95	8846	1140	6	0	1	0	0	logfile
✔	8XJK	38399	2024-10-10	2023-12-21	2.63	2.89	2.67	2.9	0.004	0.43	0.0	0.04	9.76	0.00	2.232	4.34	0.84	1.3	98.7	0.0	1.56	0.70	0.85	4.80	2.9	0.002	0.49	0.0	0.04	15.09	0.00	2.493	4.05	2.22	1.9	98.1	0.0	2.46	1.21	0.68	0.84	3.98	8850	1140	6	0	1	0	0	logfile

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