Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XCM	38247	2024-10-10	2023-12-09	3.08	3.84	3.13	3.7	0.030	1.33	0.0	0.46	17.72	0.01	2.118	18.72	0.68	4.8	95.2	0.0	-0.04	0.75	0.83	2.38	3.7	0.004	1.07	0.0	0.06	17.61	0.00	1.803	11.43	3.95	4.8	95.2	0.0	0.41	0.48	0.74	0.83	2.43	8605	1089	5	0	6	0	0	logfile
✔	8RDU	19075	2024-10-12	2023-12-08	2.3	2.53	—	2.6	0.006	0.89	0.0	0.06	19.92	0.01	1.739	3.45	0.77	2.7	97.3	0.0	-1.13	0.69	0.77	4.20	2.6	0.005	0.69	0.0	0.04	21.43	0.01	1.855	7.64	1.32	2.5	97.5	0.0	1.06	0.86	0.69	0.81	3.20	61430	6103	71	526	33	862	0	logfile
✔	8XC1	38236	2024-10-12	2023-12-07	2.21	2.60	2.41	2.6	0.004	1.19	21.0	0.09	24.88	0.01	1.869	10.58	2.05	3.9	96.1	0.0	1.19	0.63	0.81	3.49	2.6	0.003	0.65	0.0	0.04	21.09	0.00	2.297	6.36	2.22	3.3	96.7	0.0	1.04	1.58	0.62	0.80	3.31	13542	1320	12	120	22	0	0	logfile
✔	8XBW	38231	2024-10-09	2023-12-07	2.89	5.59	1.82	5.3	0.006	1.06	0.0	0.05	23.74	0.01	1.155	13.10	0.00	0.8	99.2	0.0	-0.65	0.76	0.71	-0.50	5.3	0.005	1.27	0.0	0.06	23.55	0.00	2.473	27.75	2.48	3.4	96.6	0.0	-2.17	2.02	0.81	0.81	0.77	2671	242	5	36	0	0	0	logfile
✔	8RC6	19049	2024-10-12	2023-12-06	3.3	2.08	3.27	3.4	0.005	0.59	0.0	0.04	12.31	0.00	1.989	6.15	0.58	1.4	98.4	0.1	-1.45	0.77	0.77	3.60	3.4	0.004	0.60	0.0	0.04	15.83	0.00	2.375	6.81	2.47	5.5	94.4	0.1	-0.70	0.66	0.76	0.77	3.05	12194	780	6	0	0	0	6076	logfile
✔	8XB8	38214	2024-10-10	2023-12-06	3.4	3.65	3.41	3.6	0.003	0.50	0.0	0.05	16.09	0.00	2.241	12.12	0.30	2.0	98.0	0.0	1.47	0.75	0.78	3.23	3.6	0.003	0.51	0.0	0.05	16.65	0.00	2.631	10.73	2.65	2.6	97.4	0.0	1.82	0.22	0.76	0.80	2.86	50400	5940	60	0	0	0	0	logfile
✔	8XAY	38207	2024-10-09	2023-12-05	2.81	3.06	2.92	3.1	0.005	0.83	1.0	0.05	17.84	0.01	1.996	6.40	0.29	2.5	97.5	0.0	-1.94	0.75	0.85	3.21	3.1	0.005	0.59	0.0	0.05	18.25	0.00	1.863	7.16	2.56	2.5	97.5	0.0	-0.04	0.48	0.68	0.84	3.49	48987	5887	26	26	12	0	0	logfile
✔	8RC1	19042	2024-10-12	2023-12-05	3.7	4.09	3.53	3.9	0.002	0.47	0.0	0.04	11.15	0.00	1.994	5.65	1.71	2.3	97.7	0.0	1.63	0.75	0.85	3.10	3.9	0.003	0.58	0.0	0.04	13.52	0.00	1.957	6.72	2.20	2.3	97.7	0.0	1.41	0.47	0.75	0.84	2.45	13235	1722	9	2	93	0	0	logfile
✔	8XAW	38205	2024-10-09	2023-12-05	2.73	2.98	2.85	3.0	0.005	0.81	1.0	0.05	18.55	0.01	2.039	6.68	0.60	2.9	97.1	0.0	-2.09	0.73	0.81	2.86	3.0	0.003	0.55	0.0	0.04	18.55	0.00	1.955	8.11	3.07	2.6	97.4	0.0	0.02	1.46	0.64	0.81	3.44	48983	5887	26	26	12	0	0	logfile
✔	8V8B	43033	2024-10-10	2023-12-05	2.4	2.48	2.49	2.5	0.005	0.87	0.0	0.06	13.66	0.01	2.319	1.00	0.23	2.7	97.3	0.0	-0.78	0.77	0.85	4.46	2.5	0.004	0.72	1.0	0.04	15.99	0.00	1.821	2.70	2.24	2.0	98.0	0.0	1.17	1.63	0.76	0.86	3.41	50700	6188	13	0	0	0	0	logfile
✔	8XAX	38206	2024-10-09	2023-12-05	2.92	3.17	3.05	3.2	0.004	0.81	2.0	0.05	18.85	0.01	2.068	7.34	0.88	3.4	96.6	0.0	-2.30	0.73	0.83	2.52	3.2	0.004	0.58	0.0	0.04	18.58	0.00	1.950	8.60	2.27	3.0	97.0	0.0	-0.23	0.50	0.71	0.85	2.96	48954	5887	25	26	9	0	0	logfile
✔	8XAV	38204	2024-10-09	2023-12-05	2.87	3.10	2.96	3.1	0.004	0.84	0.0	0.05	18.06	0.01	2.191	7.44	0.55	3.1	96.9	0.0	-2.35	0.57	0.71	2.67	3.1	0.004	0.57	0.0	0.04	18.17	0.00	2.418	9.53	2.94	3.1	96.9	0.0	-0.18	1.05	0.74	0.86	3.16	48264	5886	18	0	0	0	0	logfile
✔	8V85	43023	2024-10-09	2023-12-04	2.9	5.78	4.39	8.6	0.002	0.50	0.0	0.04	8.92	0.00	2.342	5.38	0.00	2.1	97.9	0.0	1.33	0.20	0.11	0.76	5.7	0.004	0.93	0.0	0.05	13.63	0.00	2.434	26.60	0.58	4.6	95.4	0.0	-1.13	4.15	0.34	0.27	1.13	1539	197	1	0	0	0	0	logfile
✔	8V81	43014	2024-10-11	2023-12-04	3.6	2.82	3.57	3.6	0.003	0.53	0.0	0.04	19.32	0.00	1.993	6.01	0.50	3.7	96.3	0.0	-0.73	0.63	0.79	1.20	3.6	0.003	0.52	0.0	0.04	18.96	0.00	1.992	5.16	5.84	2.9	97.1	0.0	-0.08	0.28	0.62	0.78	0.98	9258	1132	2	0	11	0	0	logfile
✔	8V7Z	43011	2024-10-11	2023-12-04	3.4	2.66	3.42	3.5	0.002	0.58	0.0	0.04	19.31	0.00	2.004	11.77	0.41	4.8	95.2	0.0	-0.10	0.50	0.72	1.84	3.5	0.005	0.66	0.0	0.04	19.28	0.00	1.920	10.18	6.18	5.8	94.1	0.1	-0.23	0.22	0.57	0.76	1.67	8977	1104	2	0	10	0	0	logfile
✔	8XAJ	38200	2024-10-12	2023-12-04	3.29	3.52	4.38	3.4	0.009	1.09	0.0	0.05	16.78	0.01	1.547	16.03	0.00	11.3	88.7	0.0	-1.52	0.68	0.76	2.25	3.4	0.003	0.71	0.0	0.04	17.42	0.01	2.561	11.13	1.93	9.7	90.3	0.0	0.08	1.14	0.65	0.75	1.70	11668	1410	3	0	7	0	0	logfile
✔	8RBM	19032	2024-10-12	2023-12-04	3.24	3.96	3.31	3.8	0.007	0.91	0.0	0.23	19.32	0.00	2.218	6.53	2.06	3.2	96.5	0.3	0.31	0.76	0.83	2.56	3.8	0.003	0.71	0.0	0.04	13.82	0.00	2.440	7.01	1.88	5.2	94.5	0.2	1.38	0.53	0.75	0.88	2.18	11259	1425	12	0	20	0	0	logfile
✔	8RB8	19028	2024-10-12	2023-12-03	3.41	4.14	3.49	3.8	0.006	0.87	0.0	0.22	19.00	0.00	2.169	5.23	1.51	4.5	95.3	0.2	0.92	0.77	0.84	1.81	3.9	0.003	0.65	0.0	0.04	13.60	0.00	2.465	6.21	1.03	4.7	95.3	0.1	1.79	0.61	0.77	0.90	1.64	12585	1605	13	0	22	0	0	logfile
✔	8RB7	19027	2024-10-10	2023-12-03	3.2	3.80	3.05	3.8	0.014	1.83	0.0	0.10	14.96	0.02	2.398	0.86	0.96	4.2	95.8	0.0	-1.02	0.28	0.71	1.70	3.8	0.003	0.61	0.0	0.04	17.94	0.00	2.317	8.21	0.32	2.5	97.5	0.0	1.87	2.08	0.28	0.76	1.70	5848	360	2	0	0	0	2948	logfile
✔	8RB9	19029	2024-10-12	2023-12-03	3.19	3.83	3.27	3.6	0.007	0.94	0.0	0.22	20.53	0.00	2.148	5.77	1.99	5.0	94.9	0.1	0.54	0.79	0.85	2.38	3.6	0.003	0.63	0.0	0.04	14.07	0.00	2.440	5.69	1.51	4.7	95.2	0.1	1.54	1.02	0.77	0.90	1.95	12743	1605	13	0	26	0	0	logfile

• ← previous
• Page 29 of 418
• next →