Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CF0	45525	2024-10-14	2024-06-27	3.47	3.80	3.65	3.7	0.013	1.83	2.0	0.10	20.15	0.02	1.887	0.70	0.00	4.3	95.2	0.5	-1.20	0.71	0.62	2.71	3.7	0.003	0.63	0.0	0.04	20.47	0.00	2.339	5.33	0.76	4.5	95.4	0.1	0.65	0.99	0.77	0.80	2.31	17040	888	5	79	0	0	8166	logfile
✔	9CF2	45527	2024-10-14	2024-06-27	3.15	2.38	3.26	2.8	0.002	0.61	0.0	0.04	18.51	0.00	1.441	3.97	0.00	1.4	98.6	0.0	2.60	0.67	0.60	2.80	2.8	0.003	0.58	0.0	0.04	21.00	0.00	2.383	5.11	0.51	2.9	97.1	0.0	1.38	1.44	0.73	0.77	3.26	18387	888	7	121	0	0	8649	logfile
✔	9CES	45517	2024-10-13	2024-06-27	3.28	3.52	3.31	3.5	0.013	1.96	0.0	0.10	23.23	0.03	2.515	1.01	0.91	4.1	95.9	0.0	-0.87	0.56	0.46	2.49	3.4	0.003	0.62	0.0	0.03	23.35	0.00	2.185	6.00	2.18	4.1	95.9	0.0	0.99	1.27	0.71	0.74	2.42	15839	612	4	181	0	0	7001	logfile
✔	9CF1	45526	2024-10-14	2024-06-27	3.52	3.91	3.74	3.8	0.013	1.84	1.0	0.10	20.92	0.02	1.358	1.05	0.76	6.0	93.5	0.5	-1.31	0.72	0.61	2.15	3.7	0.003	0.64	0.0	0.04	21.26	0.00	2.353	7.69	1.14	4.8	95.1	0.1	0.14	1.09	0.77	0.74	1.45	17138	888	5	82	0	0	8199	logfile
✔	9CF3	45528	2024-10-14	2024-06-27	3.2	3.49	3.29	3.5	0.002	0.72	0.0	0.05	18.41	0.00	1.968	5.72	0.00	2.2	97.8	0.0	2.31	0.66	0.61	3.23	3.5	0.004	0.59	0.0	0.04	20.49	0.00	2.210	5.21	1.52	3.4	96.6	0.0	1.28	2.77	0.74	0.80	3.10	17651	888	5	98	0	0	8383	logfile
✔	9CEJ	45503	2024-10-14	2024-06-26	2.53	2.84	2.56	2.8	0.003	0.60	0.0	0.04	12.85	0.00	2.060	7.19	0.04	1.7	98.2	0.1	0.38	0.56	0.84	3.63	2.8	0.003	0.47	0.0	0.03	15.13	0.00	2.281	4.37	1.59	0.7	99.3	0.0	4.44	0.90	0.55	0.85	3.29	69696	9720	36	0	0	0	0	logfile
✔	9CEM	45504	2024-10-14	2024-06-26	2.46	2.77	2.48	2.8	0.003	0.61	0.0	0.04	13.44	0.00	2.021	7.74	0.04	1.1	98.9	0.0	0.00	0.57	0.85	3.87	2.8	0.002	0.48	0.0	0.03	15.79	0.00	2.306	4.50	1.48	0.6	99.4	0.0	4.35	0.37	0.55	0.86	3.46	72372	9990	37	0	0	0	0	logfile
✔	9FTJ	50747	2024-10-12	2024-06-24	4.0	4.14	3.87	4.0	0.007	0.64	0.0	0.05	15.42	0.00	2.304	5.97	0.00	5.1	94.9	0.0	-0.50	0.75	0.88	—	4.0	0.004	0.59	0.0	0.04	16.05	0.00	2.565	5.08	5.00	3.7	96.3	0.0	0.46	0.92	0.74	0.87	—	12045	1570	5	0	0	0	0	logfile
✔	9iJD	60628	2024-10-11	2024-06-22	2.76	3.23	2.98	3.2	0.006	0.78	1.0	0.05	16.98	0.01	2.181	14.24	1.73	3.1	96.8	0.2	0.20	0.55	0.73	2.81	3.2	0.002	0.58	0.0	0.04	17.63	0.00	2.473	6.31	3.05	2.8	97.2	0.0	0.82	1.15	0.56	0.74	2.12	9371	1227	7	0	1	0	0	logfile
✔	9iJE	60629	2024-10-11	2024-06-22	2.34	2.89	2.69	2.9	0.005	0.70	0.0	0.05	15.99	0.01	2.240	6.01	2.15	2.2	97.8	0.0	1.09	0.60	0.79	3.56	2.9	0.003	0.55	0.0	0.04	16.72	0.00	2.562	2.71	2.86	2.2	97.8	0.0	1.57	0.37	0.60	0.80	3.36	9340	1227	7	0	1	1	0	logfile
✔	8ZYQ	60576	2024-10-10	2024-06-18	3.18	3.41	3.17	3.4	0.005	0.59	0.0	0.04	16.95	0.00	2.234	6.78	0.46	2.8	97.2	0.0	1.48	0.57	0.85	2.58	3.4	0.003	0.54	0.0	0.04	16.19	0.00	2.535	5.53	2.28	2.7	97.3	0.0	1.80	0.36	0.55	0.83	2.58	6329	796	5	0	1	0	0	logfile
✔	8ZYN	60573	2024-10-10	2024-06-18	3.27	3.51	3.26	3.5	0.003	0.56	0.0	0.04	15.25	0.00	2.256	5.78	0.86	2.1	97.9	0.0	1.18	0.59	0.83	1.15	3.5	0.003	0.55	0.0	0.04	15.72	0.00	2.627	5.49	3.03	2.5	97.5	0.0	1.36	0.33	0.58	0.83	1.42	6640	840	4	0	0	0	0	logfile
✔	8ZYo	60574	2024-10-10	2024-06-18	3.29	3.53	3.28	3.5	0.005	0.68	0.0	0.04	17.02	0.00	2.227	8.41	0.46	2.6	97.4	0.0	1.70	0.56	0.85	1.85	3.5	0.004	0.58	0.0	0.04	16.49	0.00	2.540	6.82	4.18	3.1	96.9	0.0	1.94	0.31	0.58	0.85	1.94	6238	785	5	0	1	0	0	logfile
✔	9C9Y	45376	2024-10-10	2024-06-16	3.35	2.51	3.35	2.2	0.005	0.66	0.0	0.04	16.02	0.01	2.041	6.79	0.15	6.0	93.9	0.1	-0.01	0.77	0.79	2.18	2.2	0.004	0.65	0.0	0.04	18.29	0.00	2.062	4.93	2.54	4.7	95.3	0.0	0.16	0.39	0.78	0.82	1.64	6225	773	4	8	2	0	0	logfile
✔	9CA0	45378	2024-10-10	2024-06-16	3.48	2.47	3.49	2.2	0.004	0.58	0.0	0.04	14.95	0.01	2.104	6.67	0.15	4.2	95.8	0.0	-0.73	0.77	0.78	2.35	2.2	0.004	0.57	0.0	0.04	17.36	0.00	2.492	6.35	2.25	3.9	96.1	0.0	-0.52	0.35	0.79	0.82	1.63	6265	773	5	10	1	0	0	logfile
✔	9CA1	45379	2024-10-10	2024-06-16	3.26	2.47	3.27	2.2	0.004	0.59	0.0	0.04	15.56	0.01	2.120	5.31	0.00	4.2	95.7	0.1	0.28	0.77	0.80	2.18	2.2	0.003	0.59	0.0	0.04	17.49	0.00	2.111	5.23	3.60	3.7	96.3	0.0	0.26	0.31	0.79	0.83	1.90	6265	773	5	10	2	0	0	logfile
✔	8ZWJ	60529	2024-10-09	2024-06-13	3.1	2.80	2.17	3.2	0.006	0.74	0.0	0.05	15.84	0.00	2.218	14.51	0.00	10.1	89.9	0.0	-4.10	0.44	0.86	4.88	3.2	0.003	0.52	0.0	0.05	15.38	0.00	2.601	3.22	2.59	8.2	91.8	0.0	-2.28	1.29	0.42	0.86	4.51	2760	378	8	6	0	0	0	logfile
✔	8ZWL	60532	2024-10-09	2024-06-13	3.4	3.16	3.10	3.5	0.008	0.92	0.0	0.06	11.35	0.00	2.273	8.06	0.00	5.4	94.6	0.0	-4.31	0.30	0.81	4.89	3.4	0.006	0.75	0.0	0.05	13.97	0.00	2.607	5.80	2.53	6.3	93.7	0.0	-3.25	0.57	0.33	0.85	4.75	3468	456	6	0	0	0	0	logfile
✔	8ZX6	60539	2024-10-09	2024-06-13	3.5	3.02	2.57	3.5	0.004	0.77	0.0	0.05	12.49	0.00	2.338	7.64	0.00	2.5	97.5	0.0	-4.38	0.32	0.81	5.08	3.5	0.005	0.72	0.0	0.05	13.99	0.00	2.640	5.23	1.52	9.2	90.8	0.0	-3.33	0.71	0.35	0.83	4.87	3468	456	6	0	0	0	0	logfile
✔	8ZWH	60527	2024-10-09	2024-06-13	2.5	3.26	—	3.0	0.011	0.91	0.0	0.06	9.45	0.00	2.284	18.21	0.00	3.8	96.2	0.0	-4.12	0.42	0.85	2.37	3.0	0.002	0.54	0.0	0.05	11.67	0.00	2.575	6.43	0.88	5.0	95.0	0.0	-3.11	1.18	0.43	0.84	3.55	2268	330	6	0	0	0	0	logfile

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