Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8X7A	38096	2024-10-13	2023-11-23	2.56	3.58	2.64	3.3	0.019	0.99	2.0	0.04	8.42	0.01	2.199	4.74	0.12	2.1	97.9	0.0	-0.63	0.67	0.71	2.35	3.3	0.003	0.65	0.0	0.04	14.57	0.00	2.353	6.53	2.23	3.0	97.0	0.0	1.24	1.25	0.65	0.80	2.57	15628	1044	6	0	1	0	7679	logfile
✔	8R6U	18963	2024-10-12	2023-11-23	2.98	2.77	3.03	3.0	0.007	0.73	0.0	0.05	17.13	0.01	1.964	4.89	6.46	6.6	93.4	0.0	-1.04	0.74	0.87	3.08	3.0	0.003	0.58	0.0	0.04	17.48	0.00	2.041	5.46	2.25	4.9	95.1	0.0	-0.03	0.91	0.73	0.85	2.27	13408	1566	6	43	1	0	0	logfile
✔	8V28	42901	2024-10-12	2023-11-22	3.36	3.62	3.37	3.4	0.004	0.58	0.0	0.04	27.27	0.00	2.295	5.26	0.56	2.7	97.3	0.0	2.83	0.89	0.88	1.19	3.4	0.003	0.53	0.0	0.03	27.37	0.00	2.480	5.43	1.27	2.8	97.2	0.0	3.17	1.41	0.89	0.89	1.32	12659	845	11	290	0	0	0	logfile
✔	8V25	42898	2024-10-12	2023-11-21	3.32	3.58	3.33	3.3	0.004	0.60	0.0	0.04	27.35	0.00	2.287	6.50	0.42	3.0	97.0	0.0	2.59	0.90	0.89	1.48	3.3	0.004	0.58	0.0	0.03	27.32	0.00	2.501	5.85	2.38	3.6	96.4	0.0	2.61	0.28	0.90	0.90	1.00	12689	849	11	290	0	0	0	logfile
✔	8V1S	42889	2024-10-12	2023-11-21	3.26	3.30	3.25	3.2	0.018	1.64	1.0	0.08	22.66	0.01	1.841	11.72	0.18	0.3	99.6	0.1	-4.48	0.70	0.70	2.44	3.2	0.004	0.79	0.0	0.05	21.98	0.01	2.045	15.37	4.08	6.6	93.4	0.0	-1.43	1.29	0.69	0.68	1.67	11889	1360	5	59	1	0	0	logfile
✔	8V24	42897	2024-10-15	2023-11-21	3.6	3.75	3.54	3.8	0.004	0.63	1.0	0.04	20.51	0.00	1.879	8.74	0.48	5.7	94.1	0.2	0.06	0.62	0.77	2.14	3.8	0.003	0.50	0.0	0.04	17.77	0.00	1.903	8.04	1.62	5.3	94.5	0.2	0.23	0.34	0.64	0.78	1.98	19652	1253	8	0	8	0	9601	logfile
✔	8X61	38077	2024-10-10	2023-11-20	3.05	3.26	3.01	3.3	0.004	0.60	0.0	0.04	16.00	0.00	2.218	5.90	0.34	3.2	96.8	0.0	0.61	0.69	0.80	2.83	3.3	0.003	0.56	0.0	0.04	16.31	0.00	2.568	4.86	2.57	2.7	97.3	0.0	2.03	1.25	0.66	0.81	2.67	5737	756	6	0	2	0	0	logfile
✔	8X5X	38074	2024-10-09	2023-11-20	3.5	3.67	4.06	3.8	0.004	0.77	0.0	0.04	14.15	0.00	2.094	14.97	0.43	5.3	94.7	0.0	1.03	0.42	0.53	1.42	3.8	0.003	0.78	0.0	0.04	17.52	0.00	2.610	12.40	4.74	4.5	95.5	0.0	0.94	1.34	0.44	0.57	0.65	2105	256	1	0	0	0	0	logfile
✔	8X5Y	38075	2024-10-09	2023-11-20	3.0	3.88	3.52	3.9	0.013	0.90	0.0	0.05	14.80	0.01	2.346	8.21	0.40	7.5	92.5	0.0	-0.78	0.38	0.58	2.00	3.9	0.004	0.80	0.0	0.04	16.86	0.01	2.588	9.07	2.81	6.7	93.3	0.0	-0.34	0.31	0.33	0.54	1.31	2292	274	2	0	1	0	0	logfile
✔	8X63	38078	2024-10-09	2023-11-20	3.2	4.09	3.72	4.5	0.006	0.77	1.0	0.05	15.29	0.01	2.411	9.43	0.81	8.0	92.0	0.0	-0.11	0.13	0.13	0.69	4.1	0.003	0.75	0.0	0.04	16.99	0.01	2.632	7.24	3.25	8.3	91.7	0.0	0.37	1.30	0.29	0.47	1.06	2252	270	2	0	1	0	0	logfile
✔	8X5E	38067	2024-10-09	2023-11-17	3.61	3.77	3.58	3.7	0.007	1.27	1.0	0.07	14.32	0.00	2.438	11.64	2.53	7.8	92.2	0.0	-1.30	0.51	0.81	2.40	3.7	0.003	0.62	0.0	0.04	15.65	0.00	2.406	5.50	6.01	5.2	94.8	0.0	1.42	1.42	0.51	0.81	2.38	3216	390	2	0	8	0	0	logfile
✔	8R5o	18935	2024-10-11	2023-11-17	2.49	2.13	—	1.4	0.002	0.45	0.0	0.04	11.77	0.00	2.042	4.11	0.44	2.7	97.2	0.0	0.35	0.83	0.86	5.83	1.4	0.003	0.56	0.0	0.04	15.18	0.00	1.964	4.42	1.03	2.9	97.0	0.0	1.14	0.38	0.84	0.87	5.34	54473	6680	41	0	3	255	0	logfile
✔	8X5D	38066	2024-10-14	2023-11-17	3.1	3.23	3.05	3.2	0.004	0.65	0.0	0.04	15.44	0.01	2.263	3.62	5.46	4.0	96.0	0.0	-5.02	0.78	0.87	3.03	3.2	0.003	0.60	0.0	0.04	16.55	0.00	2.512	4.59	3.37	4.4	95.6	0.0	-0.97	0.47	0.80	0.89	2.20	18477	2225	13	47	0	0	0	logfile
✔	8X5i	38070	2024-10-14	2023-11-17	3.01	3.31	3.19	3.2	0.007	1.05	0.0	0.06	15.26	0.01	2.113	3.05	0.64	4.8	95.2	0.0	-3.57	0.69	0.85	3.46	3.2	0.004	0.81	1.0	0.05	16.15	0.00	2.033	4.90	1.75	4.3	95.7	0.0	0.26	0.53	0.75	0.88	3.16	17006	2063	8	0	8	0	0	logfile
✔	8X5B	38065	2024-10-10	2023-11-16	2.84	3.12	2.88	3.1	0.014	1.74	10.0	0.11	18.03	0.02	2.248	11.12	1.65	4.1	95.8	0.1	-1.37	0.64	0.84	3.27	3.1	0.002	0.52	0.0	0.04	16.42	0.00	2.430	2.92	1.35	2.2	97.8	0.0	2.45	0.98	0.62	0.84	2.95	6973	786	6	0	28	14	0	logfile
✔	8X52	38059	2024-10-12	2023-11-16	2.9	3.11	2.86	3.3	0.009	1.13	7.0	0.07	14.34	0.01	1.598	7.57	0.88	4.7	95.2	0.2	-3.49	0.49	0.63	2.82	3.2	0.003	0.63	0.0	0.04	14.80	0.00	2.422	6.94	2.10	2.9	97.0	0.1	0.80	0.78	0.66	0.83	2.78	10907	1334	14	0	25	0	0	logfile
✔	8X51	38058	2024-10-10	2023-11-16	2.92	3.16	2.94	3.2	0.008	1.27	0.0	0.07	18.47	0.01	2.328	1.89	0.00	7.3	92.3	0.3	-3.65	0.56	0.76	3.45	3.2	0.004	0.69	0.0	0.05	20.56	0.00	2.336	5.72	3.07	6.2	93.5	0.3	-0.69	1.34	0.61	0.80	2.69	8095	885	6	42	2	0	0	logfile
✔	8X53	38060	2024-10-11	2023-11-16	3.0	3.15	2.99	3.2	0.010	1.21	12.0	0.08	14.53	0.01	1.597	5.63	0.53	4.8	95.1	0.1	-3.49	0.35	0.54	2.55	3.2	0.003	0.63	0.0	0.04	14.40	0.00	2.382	6.36	2.46	3.1	96.8	0.1	0.85	0.58	0.60	0.80	2.39	10947	1334	14	0	26	0	0	logfile
✔	8X54	38061	2024-10-11	2023-11-16	2.9	3.26	3.00	3.2	0.010	1.15	6.0	0.07	14.62	0.01	1.597	6.23	1.05	4.6	95.4	0.0	-3.47	0.40	0.59	2.75	3.2	0.003	0.62	0.0	0.04	14.49	0.00	2.407	4.65	2.01	2.7	97.2	0.1	0.94	1.28	0.61	0.82	2.69	11009	1337	14	0	27	0	0	logfile
✔	8R51	18890	2024-10-13	2023-11-15	3.2	3.29	3.12	3.3	0.004	0.52	0.0	0.05	16.46	0.00	2.103	6.56	0.57	5.9	94.1	0.0	-0.39	0.77	0.88	3.90	3.3	0.003	0.54	0.0	0.04	16.59	0.00	2.346	5.94	3.53	4.9	95.1	0.0	-0.53	0.26	0.78	0.90	3.57	13978	1793	6	0	13	0	0	logfile

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