Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WMH	37652	2024-10-12	2023-10-03	2.6	2.23	2.67	1.8	0.003	0.54	0.0	0.04	19.42	0.00	2.196	9.02	0.36	4.1	95.9	0.0	-0.02	0.60	0.62	2.31	1.8	0.004	0.59	0.0	0.04	20.27	0.00	2.512	7.27	1.81	4.5	95.5	0.0	-0.18	0.66	0.73	0.74	2.32	12942	1198	4	141	0	0	0	logfile
✔	8UF7	42185	2024-10-09	2023-10-03	3.2	2.40	3.23	2.0	0.005	0.70	0.0	0.05	18.21	0.01	2.204	18.82	0.89	12.8	86.6	0.6	-2.23	0.68	0.67	1.77	2.1	0.005	0.74	0.0	0.05	18.48	0.01	2.487	16.88	7.61	12.6	86.8	0.6	-2.27	0.30	0.68	0.67	1.43	3927	514	3	0	0	0	0	logfile
✔	8WM5	37641	2024-10-10	2023-10-03	3.04	3.42	3.11	3.4	0.007	0.77	0.0	0.04	18.60	0.01	1.284	12.25	0.00	4.3	95.6	0.1	1.57	0.66	0.85	2.35	3.4	0.004	0.58	0.0	0.04	16.86	0.00	2.376	9.34	2.54	2.2	97.8	0.0	2.45	0.92	0.58	0.86	2.17	7179	950	4	0	5	0	0	logfile
✔	8QPZ	18570	2024-10-09	2023-10-03	2.5	2.74	2.49	2.9	0.004	0.70	0.0	0.05	10.84	0.00	2.495	9.26	8.57	0.0	100.0	0.0	-1.32	0.50	0.78	4.05	2.9	0.007	0.69	0.0	0.05	12.95	0.00	2.520	4.15	8.33	6.1	93.9	0.0	-2.53	0.43	0.53	0.81	4.63	4116	612	12	0	0	0	0	logfile
✔	8WMC	37649	2024-10-14	2023-10-03	2.9	3.27	3.05	3.3	0.004	0.68	0.0	0.04	14.80	0.00	2.108	1.47	0.00	2.6	97.4	0.0	-0.05	0.70	0.83	3.00	3.3	0.003	0.55	0.0	0.04	17.03	0.00	2.358	3.07	1.85	2.9	97.1	0.0	0.39	0.40	0.69	0.85	2.73	16929	1983	4	38	4	0	0	logfile
✔	8QPV	18563	2024-10-13	2023-10-03	4.0	3.74	3.84	3.7	0.003	0.65	0.0	0.04	13.78	0.00	2.138	10.79	0.34	6.3	93.6	0.1	-0.37	0.70	0.82	—	3.7	0.004	0.82	0.0	0.04	15.95	0.00	1.721	8.87	3.02	6.7	93.3	0.1	-0.29	0.40	0.70	0.83	—	14088	1802	7	0	23	0	0	logfile
✔	8WMA	37647	2024-10-09	2023-10-03	3.47	2.40	3.36	2.3	0.007	0.80	0.0	0.05	11.97	0.00	1.739	5.91	0.31	4.4	95.6	0.0	-0.62	0.68	0.73	3.00	2.0	0.004	0.63	0.0	0.04	14.99	0.00	2.535	7.03	2.48	3.7	96.3	0.0	0.70	0.43	0.70	0.74	2.30	3172	413	2	0	0	0	0	logfile
✔	8WMi	37653	2024-10-11	2023-10-03	3.53	4.01	3.72	3.9	0.003	0.66	0.0	0.04	16.40	0.00	2.226	3.76	0.00	5.3	94.7	0.0	-1.01	0.74	0.77	1.61	3.9	0.002	0.60	0.0	0.04	17.64	0.00	2.440	5.47	1.31	5.5	94.5	0.0	-0.86	0.45	0.75	0.79	2.04	10763	1237	3	39	4	0	0	logfile
✔	8WML	37655	2024-10-12	2023-10-03	2.86	3.12	3.00	3.1	0.005	0.86	0.0	0.06	16.12	0.01	2.070	2.65	0.00	4.4	95.6	0.0	-1.13	0.70	0.83	3.08	3.1	0.003	0.59	0.0	0.04	17.41	0.00	2.352	3.92	1.26	4.1	95.9	0.0	-0.38	0.49	0.72	0.85	2.69	13283	1543	4	38	4	0	0	logfile
✔	8WM8	37645	2024-10-14	2023-10-03	3.54	3.92	3.62	3.9	0.002	0.58	0.0	0.04	14.85	0.00	1.963	8.64	0.00	7.3	92.7	0.0	-2.51	0.59	0.76	1.77	3.9	0.003	0.63	0.0	0.04	16.22	0.00	2.358	7.63	1.23	7.2	92.8	0.0	-1.95	0.39	0.56	0.73	1.52	16776	1055	5	0	1	0	8522	logfile
✔	8WM4	37640	2024-10-12	2023-10-02	2.93	3.34	3.10	3.3	0.004	0.87	0.0	0.05	17.05	0.01	2.291	4.80	0.78	5.9	94.1	0.0	-2.05	0.71	0.73	1.32	3.3	0.003	0.67	0.0	0.04	17.88	0.00	2.379	8.21	2.60	6.5	93.5	0.0	-0.90	0.55	0.73	0.75	1.38	11530	1331	3	38	4	0	0	logfile
✔	8QPE	18548	2024-10-11	2023-10-01	3.1	3.23	3.01	3.0	0.002	0.47	0.0	0.11	15.70	0.00	2.202	8.57	0.00	1.9	98.1	0.0	1.39	0.69	0.83	2.26	2.9	0.003	0.52	0.0	0.04	16.39	0.00	2.401	7.48	0.75	2.0	98.0	0.0	1.39	0.29	0.70	0.86	2.29	54566	6251	21	236	1	0	0	logfile
✔	8QPF	18549	2024-10-11	2023-10-01	2.53	3.55	2.56	3.3	0.005	0.84	0.0	0.05	14.75	0.01	2.257	3.31	0.75	2.3	97.5	0.3	-0.50	0.78	0.84	3.52	3.3	0.004	0.62	0.0	0.04	15.54	0.00	2.508	7.01	1.70	2.1	97.7	0.3	2.74	1.03	0.65	0.84	3.30	9085	1167	6	0	0	202	0	logfile
✔	8WLM	37624	2024-10-09	2023-09-30	3.57	3.69	3.72	3.8	0.004	0.80	0.0	0.05	14.40	0.00	2.198	10.34	0.00	3.4	96.6	0.0	0.52	0.43	0.74	1.11	3.8	0.003	0.72	0.0	0.04	16.75	0.00	2.598	11.04	2.38	3.4	96.6	0.0	1.02	0.48	0.44	0.75	1.16	2804	382	2	0	1	0	0	logfile
✔	8WLK	37622	2024-10-09	2023-09-30	3.37	3.55	3.44	3.6	0.006	0.91	0.0	0.05	15.66	0.01	2.227	9.42	0.00	2.6	97.4	0.0	-0.01	0.44	0.72	1.86	3.6	0.003	0.75	0.0	0.04	17.35	0.00	2.469	10.45	5.32	1.8	98.2	0.0	0.82	1.04	0.43	0.73	1.88	2873	383	2	0	1	0	0	logfile
✔	8WLR	37629	2024-10-10	2023-09-30	3.12	3.43	3.11	3.3	0.003	0.53	0.0	0.04	16.12	0.00	2.266	4.86	0.14	1.9	98.1	0.0	0.16	0.70	0.88	3.10	3.3	0.004	0.55	0.0	0.04	16.20	0.00	2.325	3.03	1.59	2.0	98.0	0.0	0.71	0.35	0.73	0.90	3.05	6431	792	4	0	2	0	0	logfile
✔	8WLL	37623	2024-10-09	2023-09-30	3.74	3.82	3.77	3.9	0.024	1.06	0.0	0.10	13.07	0.01	2.238	10.14	0.00	2.9	97.1	0.0	0.58	0.50	0.76	1.39	3.8	0.004	0.91	0.0	0.05	15.79	0.00	2.553	13.35	4.68	2.9	97.1	0.0	0.73	0.51	0.49	0.77	0.17	2815	389	2	0	1	0	0	logfile
✔	8WLJ	37621	2024-10-09	2023-09-30	3.6	3.72	3.64	3.7	0.005	0.82	1.0	0.05	14.05	0.01	2.283	8.82	0.00	2.5	97.5	0.0	0.69	0.50	0.75	2.07	3.7	0.003	0.72	0.0	0.04	16.59	0.01	2.408	9.68	3.47	1.9	98.1	0.0	1.32	1.05	0.49	0.74	1.80	4035	530	2	0	0	0	0	logfile
✔	8WLD	37616	2024-10-09	2023-09-29	3.48	3.88	3.62	3.7	0.002	0.52	0.0	0.04	12.16	0.00	2.045	6.46	0.02	5.5	94.3	0.2	-0.13	0.77	0.80	1.90	3.7	0.005	0.66	0.0	0.05	14.02	0.00	2.298	6.75	1.50	8.0	91.9	0.1	-0.18	0.48	0.78	0.83	1.93	48292	6850	15	0	0	0	0	logfile
✔	8QP5	18543	2024-10-12	2023-09-29	4.4	3.76	4.19	3.6	0.003	0.63	0.0	0.04	13.40	0.00	2.113	15.18	0.17	8.0	92.0	0.0	-1.49	0.69	0.79	—	3.6	0.003	0.65	0.0	0.04	13.63	0.00	2.315	10.60	0.09	7.1	92.9	0.0	-1.58	0.36	0.69	0.79	—	12554	1746	6	0	0	0	0	logfile

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