Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8J6R	36012	2024-11-15	2023-04-26	2.76	2.15	2.84	2.0	0.004	0.62	0.0	0.06	13.55	0.01	2.116	6.13	0.00	2.6	97.4	0.0	0.52	0.76	0.75	3.17	2.0	0.003	0.57	0.0	0.04	16.13	0.00	2.568	5.75	2.51	2.4	97.6	0.0	0.87	1.08	0.78	0.79	3.25	9120	1151	6	0	2	1	0	logfile
✔	8oUZ	17206	2024-11-18	2023-04-25	2.2	2.43	2.22	2.4	0.003	0.56	0.0	0.04	16.59	0.00	1.833	4.42	1.00	3.4	96.6	0.0	1.04	0.75	0.79	4.38	2.4	0.003	0.55	0.0	0.04	16.56	0.00	1.769	3.88	2.00	3.2	96.8	0.0	0.75	0.48	0.73	0.78	4.13	14822	924	11	0	6	142	7373	logfile
✔	8oUW	17204	2024-11-19	2023-04-25	3.75	3.90	3.25	3.5	0.006	0.91	0.0	0.05	14.71	0.01	2.008	0.19	0.38	2.0	98.0	0.0	0.31	0.81	0.65	1.53	3.4	0.003	0.65	0.0	0.04	16.19	0.00	1.912	5.99	1.00	2.7	97.3	0.0	1.33	0.91	0.89	0.82	1.33	53754	6564	25	67	13	0	0	logfile
✔	8J6D	36001	2024-11-15	2023-04-25	3.1	2.42	3.21	3.1	0.004	0.73	0.0	0.04	12.64	0.00	2.133	7.07	0.38	3.8	96.2	0.0	-1.02	0.77	0.76	3.05	3.1	0.003	0.65	0.0	0.04	14.72	0.00	2.527	7.45	2.54	4.1	95.9	0.0	0.02	1.24	0.77	0.76	2.12	8149	1123	6	0	0	0	0	logfile
✔	8oUY	17205	2024-11-17	2023-04-25	3.4	2.97	3.46	3.3	0.002	0.52	0.0	0.04	17.65	0.00	1.811	4.62	0.00	4.5	95.5	0.0	-0.78	0.71	0.78	2.26	3.3	0.004	0.56	0.0	0.04	17.38	0.00	1.718	4.01	1.74	5.8	94.2	0.0	-0.50	1.14	0.71	0.78	2.14	14695	925	7	0	6	0	7380	logfile
✔	8J6F	36003	2024-11-14	2023-04-25	3.3	3.50	3.25	3.5	0.009	1.06	0.0	0.06	14.30	0.01	2.208	7.88	0.00	9.8	90.2	0.0	-3.18	0.64	0.73	2.32	3.5	0.004	0.73	0.0	0.04	15.98	0.01	2.563	13.00	3.19	9.2	90.8	0.0	-2.25	0.40	0.64	0.76	2.55	3870	496	5	0	1	0	0	logfile
✔	8J5T	35993	2024-11-17	2023-04-24	2.98	3.29	3.03	3.2	0.007	0.96	2.0	0.05	16.08	0.01	2.004	13.98	0.65	8.0	92.0	0.0	-2.41	0.73	0.89	3.29	3.2	0.003	0.65	0.0	0.04	16.74	0.00	1.936	5.88	1.89	5.7	94.3	0.0	-0.55	1.25	0.73	0.90	2.48	13234	1740	5	0	5	0	0	logfile
✔	8J5S	35992	2024-11-17	2023-04-24	3.0	3.28	3.04	3.2	0.009	0.85	0.0	0.05	16.46	0.01	2.199	14.03	0.36	6.2	93.8	0.0	-2.34	0.75	0.87	2.41	3.2	0.004	0.68	0.0	0.04	16.63	0.00	1.888	5.87	2.33	4.3	95.7	0.0	-0.96	0.39	0.74	0.89	2.40	13275	1742	6	0	13	0	0	logfile
✔	8J5R	35991	2024-11-17	2023-04-24	3.28	3.61	3.32	3.5	0.007	0.96	8.0	0.07	15.64	0.01	2.145	14.34	0.22	6.2	93.8	0.0	-1.53	0.74	0.87	2.61	3.5	0.002	0.57	0.0	0.04	16.37	0.00	2.576	5.16	1.69	3.6	96.4	0.0	0.32	0.91	0.73	0.89	2.22	13050	1726	5	0	1	0	0	logfile
✔	8J62	35999	2024-11-16	2023-04-24	2.5	3.25	2.43	3.0	0.002	0.46	0.0	0.04	18.88	0.00	2.216	9.71	2.91	0.9	99.1	0.0	1.53	0.80	0.83	3.47	3.0	0.004	0.69	0.0	0.04	18.97	0.00	2.500	8.16	4.51	1.3	98.7	0.0	1.54	1.28	0.78	0.85	3.68	10448	1182	14	38	2	0	0	logfile
✔	8J5Y	33733	2024-11-16	2023-04-24	3.07	3.50	3.24	20.0	0.004	0.84	0.0	0.05	13.88	0.01	2.153	12.97	0.00	6.0	93.7	0.3	-1.55	0.08	0.00	0.39	3.4	0.005	0.94	0.0	0.05	16.17	0.01	2.453	16.44	1.82	9.2	90.6	0.1	-1.51	1.43	0.13	0.08	0.57	10905	1389	4	0	0	0	0	logfile
✔	8J5Q	35990	2024-11-17	2023-04-24	3.25	3.54	3.32	3.4	0.008	0.93	0.0	0.05	15.30	0.01	2.216	12.78	0.29	3.0	97.0	0.0	-1.09	0.72	0.86	3.25	3.4	0.002	0.59	0.0	0.04	15.99	0.00	2.499	6.39	1.39	2.5	97.5	0.0	0.96	0.43	0.69	0.86	2.34	13187	1737	6	0	10	0	0	logfile
✔	8SLY	40583	2024-11-19	2023-04-24	3.32	3.53	3.22	3.4	0.006	0.66	0.0	0.05	15.01	0.00	2.205	6.02	0.00	1.7	98.3	0.0	1.34	0.75	0.86	2.93	3.4	0.003	0.57	0.0	0.04	14.81	0.00	2.464	3.18	1.33	2.2	97.8	0.0	2.30	0.40	0.75	0.89	2.28	18257	2364	12	0	13	4	0	logfile
✔	8SLX	40582	2024-11-18	2023-04-24	3.23	3.68	3.11	3.5	0.004	0.48	0.0	0.04	13.46	0.00	2.353	5.45	0.00	1.2	98.8	0.0	1.44	0.76	0.83	3.04	3.5	0.002	0.48	0.0	0.03	14.27	0.00	2.626	5.14	2.04	1.7	98.3	0.0	2.46	0.40	0.76	0.84	2.30	17885	2376	10	0	5	4	0	logfile
✔	8oUF	17191	2024-11-18	2023-04-22	3.1	3.00	3.13	3.1	0.006	0.99	0.0	0.07	17.15	0.01	2.213	1.68	0.14	0.9	99.1	0.0	-0.59	0.64	0.76	4.67	3.1	0.003	0.59	0.0	0.04	18.11	0.00	2.126	5.32	1.83	1.6	98.4	0.0	0.16	1.20	0.75	0.84	3.22	15230	1674	10	86	0	0	0	logfile
✔	8oTX	17186	2024-11-18	2023-04-21	3.08	3.75	3.14	3.5	0.003	0.44	0.0	0.04	17.93	0.00	2.057	35.10	0.00	6.1	93.9	0.0	2.35	0.74	0.84	1.46	3.6	0.005	0.98	2.0	0.04	17.97	0.00	2.432	8.00	3.07	4.6	95.3	0.1	2.26	0.33	0.76	0.86	1.22	15966	2108	6	0	4	2	0	logfile
✔	8J57	35982	2024-11-14	2023-04-21	2.85	3.16	2.85	3.2	0.013	1.67	0.0	0.09	13.66	0.01	2.397	6.43	0.00	3.0	97.0	0.0	-0.42	0.63	0.88	4.02	3.2	0.003	0.65	0.0	0.04	15.09	0.00	2.587	7.35	1.10	1.4	98.6	0.0	4.42	0.87	0.51	0.84	1.85	7007	943	17	0	7	0	0	logfile
✔	8J5D	35985	2024-11-15	2023-04-21	3.0	3.25	3.07	3.2	0.003	0.71	0.0	0.04	15.67	0.00	2.144	12.52	2.43	5.0	95.0	0.0	0.07	0.69	0.73	2.71	3.2	0.003	0.70	0.0	0.04	16.48	0.00	2.407	10.26	3.01	5.6	94.4	0.0	-0.09	0.34	0.68	0.72	2.30	9531	1244	4	0	0	0	0	logfile
✔	8oTT	17184	2024-11-17	2023-04-21	3.3	3.86	3.31	3.4	0.005	0.77	0.0	0.05	24.30	0.01	2.513	1.15	0.16	1.3	98.7	0.0	1.04	0.89	0.82	2.67	3.4	0.004	0.71	4.0	0.04	26.65	0.00	2.318	7.40	0.48	2.4	97.6	0.0	3.94	0.77	0.91	0.88	2.07	12973	859	17	288	8	0	0	logfile
✔	8oTW	17185	2024-11-16	2023-04-21	3.68	4.23	3.73	4.0	0.004	0.85	0.0	0.04	18.41	0.00	2.149	13.11	0.09	3.7	96.3	0.0	1.81	0.64	0.81	0.82	4.0	0.003	0.73	0.0	0.04	18.23	0.00	2.458	10.45	3.51	3.8	96.2	0.0	2.49	0.35	0.63	0.81	0.83	11571	1522	4	0	2	0	0	logfile

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