Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iXL	35795	2024-11-16	2023-04-01	3.5	3.61	3.45	3.6	0.012	1.48	0.0	0.10	11.65	0.00	2.568	2.07	0.00	0.4	99.6	0.0	2.40	0.71	0.84	1.08	3.6	0.003	0.46	0.0	0.04	15.97	0.00	2.582	5.21	2.81	0.5	99.5	0.0	5.61	1.12	0.68	0.84	1.00	10970	1455	35	0	0	0	0	logfile
✔	8oNA	16984	2024-11-17	2023-04-01	3.0	2.29	2.92	2.1	0.004	0.74	0.0	0.05	13.10	0.00	2.029	3.79	0.43	2.5	97.5	0.0	0.59	0.71	0.75	4.09	2.0	0.003	0.65	0.0	0.04	15.72	0.00	2.557	5.32	2.14	2.4	97.6	0.0	1.92	1.16	0.80	0.81	3.51	12900	1581	12	0	18	0	0	logfile
✔	8iXK	35794	2024-11-17	2023-04-01	3.3	3.43	3.25	3.4	0.005	0.71	0.0	0.04	12.45	0.00	2.310	4.15	0.65	2.9	97.1	0.0	4.29	0.77	0.86	2.56	3.4	0.003	0.49	0.0	0.03	15.03	0.00	2.535	5.42	1.50	1.2	98.8	0.0	4.83	0.37	0.76	0.87	2.03	14790	1950	25	0	0	0	0	logfile
✔	8oN8	16982	2024-11-17	2023-04-01	2.7	2.28	2.63	2.1	0.003	0.65	0.0	0.04	12.58	0.00	2.295	3.01	0.00	1.9	98.1	0.0	1.34	0.72	0.76	4.15	2.1	0.003	0.62	0.0	0.04	15.46	0.00	2.524	4.98	1.58	2.4	97.6	0.0	1.18	0.48	0.81	0.82	3.90	12891	1572	12	0	21	0	0	logfile
✔	8oN7	16981	2024-11-17	2023-04-01	2.5	2.19	2.49	2.0	0.004	0.71	0.0	0.05	13.29	0.00	2.122	3.60	0.21	2.3	97.7	0.0	1.48	0.74	0.78	4.93	2.0	0.003	0.63	0.0	0.04	15.98	0.00	2.536	4.77	2.49	2.9	97.1	0.0	1.67	1.13	0.83	0.84	4.03	13032	1587	18	0	24	0	0	logfile
✔	8oMA	16972	2024-11-16	2023-03-31	3.29	2.61	3.29	3.2	0.008	1.30	1.0	0.09	19.92	0.01	1.878	28.14	2.97	7.9	92.1	0.0	-1.51	0.68	0.70	0.46	1.6	0.004	0.74	0.0	0.05	20.31	0.00	1.866	20.65	3.47	6.5	93.5	0.0	-0.35	1.95	0.64	0.60	0.54	11379	1337	6	34	3	0	0	logfile
✔	8iWR	35777	2024-11-14	2023-03-31	3.52	3.68	3.52	3.7	0.004	0.70	0.0	0.04	18.08	0.00	2.149	9.54	0.26	4.3	95.7	0.0	0.89	0.65	0.73	0.62	3.7	0.005	0.75	0.0	0.04	17.69	0.00	2.111	10.54	3.65	7.4	92.6	0.0	0.34	0.55	0.71	0.81	1.48	6871	893	2	0	3	0	0	logfile
✔	8oMR	16976	2024-11-17	2023-03-31	3.3	3.61	2.81	3.4	0.010	1.00	0.0	0.07	17.49	0.01	1.512	5.88	6.62	8.1	91.9	0.0	-1.83	0.88	0.88	3.71	3.4	0.002	0.53	0.0	0.04	18.12	0.00	2.525	4.22	3.61	4.3	95.7	0.0	-0.26	0.38	0.87	0.84	2.99	7626	772	5	75	3	0	0	logfile
✔	8oMU	16977	2024-11-14	2023-03-31	3.43	3.90	3.53	3.8	0.003	0.65	0.0	0.04	18.00	0.00	2.230	13.64	0.79	4.1	95.9	0.0	0.64	0.61	0.77	1.27	3.8	0.003	0.65	0.0	0.04	18.00	0.00	2.579	11.54	5.89	4.1	95.9	0.0	1.00	1.21	0.61	0.76	1.36	4737	612	2	0	0	0	0	logfile
✔	8iWT	35779	2024-11-14	2023-03-31	3.25	3.42	3.26	3.4	0.004	0.63	0.0	0.04	16.20	0.01	1.687	8.30	0.52	2.7	97.0	0.3	2.49	0.66	0.78	2.04	3.4	0.004	0.63	0.0	0.04	16.89	0.01	1.962	8.02	3.40	3.6	96.1	0.3	1.91	1.02	0.68	0.84	2.00	6820	891	2	0	2	0	0	logfile
✔	8iWS	35778	2024-11-14	2023-03-31	3.42	3.63	3.46	3.7	0.003	0.65	2.0	0.04	16.82	0.00	1.757	7.59	0.92	4.4	95.6	0.0	2.06	0.67	0.75	1.15	3.6	0.003	0.68	0.0	0.04	17.78	0.00	1.326	9.25	3.14	4.8	95.2	0.0	1.07	0.67	0.71	0.84	1.85	6809	890	2	0	3	0	0	logfile
✔	8iWW	35781	2024-11-14	2023-03-31	3.71	3.90	3.74	3.9	0.003	1.22	0.0	0.04	14.52	0.00	2.256	9.22	0.13	3.4	96.6	0.0	-1.69	0.70	0.73	1.36	3.8	0.003	1.02	0.0	0.04	17.14	0.00	2.272	11.52	2.09	4.3	95.7	0.0	0.80	1.47	0.75	0.80	1.25	6848	890	2	0	3	0	0	logfile
✔	8oM5	16969	2024-11-17	2023-03-31	3.52	2.68	3.58	2.9	0.007	1.08	1.0	0.08	17.61	0.00	1.974	21.73	1.93	7.9	92.0	0.1	-1.45	0.75	0.80	1.43	2.9	0.004	0.78	0.0	0.05	18.49	0.01	1.985	16.88	4.21	7.1	92.8	0.1	-0.79	1.02	0.70	0.70	1.12	13138	1640	4	0	4	0	0	logfile
✔	8oMo	16973	2024-11-16	2023-03-31	3.43	2.51	3.47	3.2	0.007	1.36	2.0	0.09	17.68	0.00	1.488	21.48	4.68	8.0	92.0	0.0	-3.82	0.75	0.80	1.33	2.1	0.005	1.00	1.0	0.05	18.82	0.00	1.916	21.04	4.41	5.0	95.0	0.0	-0.62	0.53	0.71	0.72	1.08	10290	1288	4	0	4	0	0	logfile
✔	8oM9	16971	2024-11-17	2023-03-31	3.32	2.45	3.31	2.0	0.008	1.29	3.0	0.09	18.88	0.00	2.025	25.29	2.76	6.3	93.7	0.0	-1.44	0.71	0.73	0.58	1.7	0.003	0.69	0.0	0.04	19.52	0.00	1.880	17.56	4.29	5.5	94.5	0.0	-0.72	0.47	0.68	0.66	0.50	13314	1548	6	44	4	0	0	logfile
✔	8iWU	35780	2024-11-14	2023-03-31	3.31	3.58	3.40	3.5	0.004	1.25	0.0	0.04	16.53	0.00	2.094	7.70	0.13	3.8	96.1	0.1	1.91	0.74	0.80	1.39	3.5	0.006	1.02	1.0	0.04	17.13	0.00	1.911	8.92	4.56	4.6	95.4	0.0	1.45	0.52	0.76	0.86	1.72	6843	893	2	0	2	0	0	logfile
✔	8oL5	16949	2024-11-13	2023-03-30	3.4	3.10	1.47	3.0	0.003	0.44	0.0	0.06	9.97	0.00	2.393	2.17	0.00	0.0	100.0	0.0	-0.75	0.53	0.87	5.76	3.0	0.002	0.40	0.0	0.05	15.49	0.00	2.613	3.26	3.04	1.4	98.6	0.0	-1.23	1.92	0.55	0.88	5.40	2260	310	10	0	0	0	0	logfile
✔	8oLQ	16961	2024-11-13	2023-03-30	4.0	3.17	3.52	3.7	0.003	0.49	0.0	0.05	7.64	0.00	2.207	3.69	0.00	0.0	100.0	0.0	-0.52	0.25	0.70	—	3.5	0.002	0.49	0.0	0.05	14.47	0.00	2.564	3.28	3.20	8.7	91.3	0.0	-2.19	1.58	0.24	0.71	—	2445	160	5	0	0	0	1185	logfile
✔	8oLU	16963	2024-11-18	2023-03-30	2.59	2.36	2.57	2.6	0.018	2.11	67.0	0.10	17.27	0.03	2.180	7.21	5.92	4.0	95.4	0.6	-2.77	0.82	0.89	4.42	2.5	0.005	0.66	0.0	0.05	17.49	0.00	2.498	7.24	2.11	1.8	98.2	0.0	0.97	1.20	0.77	0.86	3.98	48930	6316	30	0	2	0	0	logfile
✔	8oL3	16944	2024-11-14	2023-03-30	3.5	3.67	1.73	4.2	0.009	0.67	0.0	0.06	9.52	0.01	2.263	7.26	0.00	0.0	100.0	0.0	-0.18	0.42	0.77	3.49	4.2	0.002	0.46	0.0	0.06	16.12	0.00	2.592	10.69	2.00	7.7	92.3	0.0	-0.76	0.92	0.37	0.76	4.57	4970	330	10	0	0	0	2500	logfile

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