Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8C8K	16482	2024-11-16	2023-01-20	2.87	2.34	2.70	2.8	0.013	1.50	0.0	0.08	13.31	0.01	2.261	10.98	0.63	1.9	98.1	0.0	-1.75	0.29	0.70	3.14	2.8	0.006	0.79	0.0	0.05	16.99	0.00	2.314	9.15	4.25	3.0	97.0	0.0	-1.81	0.63	0.35	0.78	3.77	11430	1518	6	0	0	0	0	logfile
✔	8C8P	16490	2024-11-13	2023-01-20	4.1	5.09	4.13	5.5	0.002	0.67	0.0	0.05	13.50	0.00	2.267	6.06	0.00	2.6	97.4	0.0	-2.08	0.66	0.67	—	5.0	0.002	0.69	0.0	0.04	12.74	0.00	2.623	8.99	0.00	3.5	96.5	0.0	-1.34	1.11	0.67	0.71	—	2449	314	2	0	0	0	0	logfile
✔	8i4H	35173	2024-11-14	2023-01-19	3.81	3.30	3.92	3.7	0.001	0.43	0.0	0.04	9.23	0.00	2.262	10.14	5.85	7.4	92.6	0.0	-4.65	0.69	0.64	1.02	3.8	0.006	1.24	1.0	0.06	14.26	0.01	2.084	19.66	3.34	12.1	87.9	0.0	-3.22	1.85	0.72	0.68	1.34	6539	833	2	0	0	0	0	logfile
✔	8C89	16473	2024-11-14	2023-01-19	4.41	3.51	3.83	2.2	0.007	1.10	0.0	0.09	14.36	0.01	2.149	25.75	0.71	10.4	89.3	0.3	-2.47	0.75	0.77	—	2.2	0.004	0.86	0.0	0.05	13.54	0.01	2.401	25.25	0.00	11.0	89.0	0.0	-2.05	0.56	0.70	0.65	—	5106	652	5	0	4	0	0	logfile
✔	8FVU	29493	2024-11-19	2023-01-19	3.6	3.85	3.65	3.8	0.012	1.22	0.0	0.07	10.95	0.00	2.338	2.29	0.00	6.9	91.7	1.4	-1.70	0.80	0.83	2.31	3.8	0.003	0.67	0.0	0.04	15.49	0.00	2.429	6.05	1.62	8.1	91.8	0.1	-0.44	2.10	0.78	0.82	1.84	18758	2344	4	0	4	0	0	logfile
✔	8i4G	35172	2024-11-14	2023-01-19	3.68	2.81	3.67	3.8	0.002	0.63	0.0	0.04	10.19	0.00	2.246	6.82	5.71	9.0	91.0	0.0	-4.78	0.68	0.65	1.56	3.2	0.006	1.19	1.0	0.05	14.90	0.00	2.374	19.54	4.36	11.9	88.1	0.0	-3.43	1.84	0.70	0.68	1.67	6057	768	2	0	0	0	0	logfile
✔	8i41	35161	2024-11-17	2023-01-18	3.42	3.95	3.46	3.8	0.002	0.47	0.0	0.04	20.47	0.00	2.152	5.38	0.36	6.3	93.7	0.0	-0.66	0.83	0.85	2.51	3.8	0.003	0.53	0.0	0.04	16.91	0.00	2.436	5.53	3.13	5.3	94.7	0.0	-0.37	1.10	0.83	0.85	2.48	13515	1565	10	0	25	0	0	logfile
✔	8C81	16468	2024-11-18	2023-01-18	3.3	3.77	3.41	3.7	0.004	0.61	0.0	0.05	16.33	0.00	2.225	3.97	0.00	3.7	96.3	0.0	0.64	0.67	0.82	2.60	3.7	0.002	0.53	0.0	0.04	15.49	0.00	2.467	3.11	0.94	3.6	96.4	0.0	1.01	0.28	0.74	0.87	1.84	15709	1938	8	0	6	0	0	logfile
✔	8C82	16469	2024-11-20	2023-01-18	3.4	3.85	3.56	3.8	0.003	0.62	0.0	0.04	17.02	0.00	2.108	4.64	0.09	3.0	97.0	0.0	0.90	0.70	0.81	2.29	3.8	0.004	0.62	0.0	0.05	16.06	0.00	2.568	3.08	1.90	4.7	95.3	0.0	0.98	0.46	0.71	0.84	2.13	21070	2618	12	0	6	0	0	logfile
✔	8FUV	29481	2024-11-16	2023-01-18	3.1	3.21	2.89	3.1	0.003	0.59	0.0	0.04	12.83	0.00	2.169	5.52	0.00	5.6	94.4	0.0	-0.17	0.36	0.86	3.59	3.1	0.005	0.65	0.0	0.05	14.35	0.01	2.457	5.62	2.03	5.5	94.1	0.4	-0.65	1.17	0.37	0.89	3.44	10170	1368	7	0	0	0	0	logfile
✔	8i3U	35156	2024-11-14	2023-01-18	3.6	3.90	3.39	3.8	0.002	0.54	0.0	0.04	9.20	0.00	2.198	8.85	1.09	1.9	98.1	0.0	-0.52	0.64	0.75	3.16	3.8	0.003	0.64	0.0	0.04	15.09	0.01	2.548	10.95	1.36	3.5	96.5	0.0	-0.37	0.74	0.68	0.77	2.35	3408	437	4	0	1	0	0	logfile
✔	8i3V	35157	2024-11-15	2023-01-18	2.85	3.23	2.85	3.2	0.003	0.54	0.0	0.04	16.33	0.00	2.029	3.98	2.16	2.2	97.6	0.2	1.90	0.59	0.81	3.09	3.2	0.003	0.53	0.0	0.04	15.78	0.00	2.466	2.16	0.87	1.8	98.0	0.2	1.86	0.34	0.53	0.78	3.26	8792	548	2	0	2	11	4373	logfile
✔	8i48	35164	2024-11-17	2023-01-18	2.74	3.16	2.71	3.0	0.005	0.89	0.0	0.06	23.41	0.01	2.243	13.18	0.36	4.6	95.4	0.0	-1.37	0.71	0.85	2.60	3.0	0.004	0.88	1.0	0.05	19.37	0.00	1.853	6.73	1.49	3.1	96.9	0.0	0.92	0.33	0.76	0.88	2.95	14270	1560	15	0	45	160	0	logfile
✔	8FVG	29486	2024-11-18	2023-01-18	3.1	2.34	3.16	3.2	0.004	0.66	0.0	0.05	14.20	0.00	2.106	8.55	0.00	5.7	94.3	0.0	-0.63	0.26	0.75	2.01	3.1	0.011	0.73	0.0	0.05	16.33	0.00	2.425	6.41	3.52	7.3	92.7	0.0	-0.77	1.36	0.26	0.78	2.22	48009	6409	13	0	0	0	0	logfile
✔	8C80	16467	2024-11-16	2023-01-18	3.4	3.89	3.54	3.8	0.006	0.85	1.0	0.05	15.81	0.01	1.975	6.41	0.75	4.2	95.8	0.0	-1.48	0.65	0.77	1.46	3.8	0.004	0.63	0.0	0.04	15.46	0.00	2.496	3.16	2.09	3.7	96.3	0.0	0.52	0.80	0.71	0.85	2.13	10968	1350	7	0	6	0	0	logfile
✔	8i47	35163	2024-11-17	2023-01-18	2.7	3.00	2.61	2.9	0.004	0.84	0.0	0.05	21.44	0.01	2.184	11.54	1.00	4.8	95.2	0.0	-1.87	0.66	0.85	2.27	2.9	0.004	0.84	1.0	0.05	18.94	0.00	2.339	7.05	1.14	2.5	97.4	0.1	0.93	0.40	0.67	0.77	2.69	13695	1560	15	0	30	30	0	logfile
✔	8i3D	35150	2024-11-15	2023-01-17	2.81	3.08	2.87	3.1	0.009	0.99	2.0	0.06	13.50	0.01	2.328	2.52	0.83	5.6	94.4	0.0	-5.74	0.67	0.88	3.66	3.1	0.005	0.68	0.0	0.05	15.65	0.00	2.441	3.75	1.77	4.3	95.7	0.0	-0.14	0.42	0.65	0.89	3.35	8798	1132	2	0	0	0	0	logfile
✔	8i3i	35153	2024-11-18	2023-01-17	2.68	2.94	2.69	2.9	0.007	0.94	4.0	0.06	15.82	0.01	2.175	6.83	0.44	7.1	92.7	0.2	-1.00	0.81	0.86	3.85	2.9	0.004	0.63	0.0	0.05	17.14	0.00	2.271	6.77	2.29	7.5	92.5	0.0	-0.36	1.08	0.82	0.87	3.49	16808	2088	8	0	8	0	0	logfile
✔	8i3S	35155	2024-11-14	2023-01-17	3.9	4.12	3.88	4.1	0.003	0.59	0.0	0.05	11.40	0.00	2.235	14.76	2.54	2.9	97.1	0.0	-1.18	0.64	0.72	2.12	4.1	0.004	0.73	0.0	0.05	16.05	0.00	2.433	14.76	5.65	5.3	94.7	0.0	-1.15	2.28	0.65	0.73	1.19	3272	420	4	0	1	0	0	logfile
✔	8i3Q	35154	2024-11-14	2023-01-17	3.1	3.03	2.94	3.1	0.005	0.83	0.0	0.05	22.35	0.02	1.762	14.07	5.39	7.2	92.8	0.0	0.08	0.79	0.76	3.10	3.0	0.002	0.57	0.0	0.03	21.72	0.00	2.513	6.61	1.16	4.8	95.2	0.0	1.67	1.99	0.80	0.79	2.33	6998	595	3	95	1	0	0	logfile

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