Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EMV	28266	2024-11-16	2022-09-28	3.6	3.24	3.56	3.5	0.007	0.81	0.0	0.05	15.16	0.01	2.339	3.11	0.00	6.5	93.5	0.0	-4.26	0.71	0.84	2.37	3.5	0.002	0.58	0.0	0.04	16.40	0.00	2.415	3.37	1.83	3.9	96.1	0.0	-0.29	1.15	0.71	0.84	1.73	5949	747	2	0	1	0	0	logfile
✔	8B71	15895	2024-11-15	2022-09-28	3.8	3.80	3.64	3.9	0.005	0.71	0.0	0.05	17.41	0.01	2.129	12.04	0.00	5.1	94.9	0.0	0.64	0.67	0.81	1.45	3.9	0.003	0.63	0.0	0.04	18.53	0.00	2.459	13.62	1.94	3.1	96.9	0.0	1.42	0.35	0.66	0.80	1.28	8694	1104	4	0	2	0	0	logfile
✔	8GZZ	34406	2024-11-14	2022-09-27	3.52	3.89	3.45	3.7	0.004	0.62	0.0	0.04	12.19	0.00	2.248	8.72	0.00	5.0	95.0	0.0	-0.99	0.78	0.86	3.03	3.7	0.004	0.60	0.0	0.04	14.09	0.00	2.398	6.54	2.11	4.2	95.8	0.0	-1.41	0.45	0.78	0.86	3.22	6568	854	6	0	0	0	0	logfile
✔	8B6Z	15893	2024-11-14	2022-09-27	2.9	3.26	3.37	2.8	0.002	0.51	0.0	0.04	12.07	0.00	2.286	0.59	0.27	1.4	98.6	0.0	-0.69	0.20	0.56	1.62	2.8	0.003	0.69	0.0	0.04	15.56	0.01	2.517	6.16	0.27	3.2	96.8	0.0	-0.19	1.07	0.23	0.76	1.65	3581	442	2	8	0	0	0	logfile
✔	8GZ8	34392	2024-11-14	2022-09-26	2.35	2.27	2.10	2.5	0.005	0.73	0.0	0.06	14.15	0.00	2.500	6.32	0.00	0.5	99.5	0.0	-0.71	0.43	0.88	4.53	2.6	0.004	0.61	0.0	0.06	15.00	0.00	2.653	3.79	3.57	1.1	98.9	0.0	-0.72	0.87	0.42	0.89	4.58	3336	540	71	0	0	20	0	logfile
✔	8GZ7	34391	2024-11-18	2022-09-26	3.5	3.85	3.64	3.8	0.012	1.67	6.0	0.13	24.08	0.01	1.693	4.61	32.81	5.8	93.5	0.7	-1.19	0.62	0.80	3.08	3.8	0.003	0.60	0.0	0.04	17.55	0.00	2.490	5.42	4.49	3.4	96.3	0.3	-0.20	1.81	0.66	0.84	3.22	17474	2136	8	0	0	0	0	logfile
✔	8GZ9	34393	2024-11-13	2022-09-26	2.62	2.44	2.40	2.4	0.003	0.69	0.0	0.06	14.01	0.00	2.670	1.93	0.00	0.3	99.7	0.0	-0.15	0.28	0.90	7.26	2.4	0.002	0.55	0.0	0.06	14.22	0.00	2.674	0.96	2.21	0.6	99.4	0.0	-0.31	0.27	0.28	0.91	8.15	2426	390	58	0	0	24	0	logfile
✔	8GYW	34378	2024-11-14	2022-09-24	3.9	3.93	3.77	4.0	0.008	1.46	0.0	0.08	16.78	0.02	2.008	6.48	0.30	0.8	99.2	0.0	1.24	0.46	0.73	1.92	4.0	0.004	0.72	0.0	0.04	16.77	0.00	1.174	11.48	4.23	1.3	98.7	0.0	2.54	1.28	0.49	0.75	0.74	6076	760	4	0	6	0	0	logfile
✔	8GZ1	34387	2024-11-17	2022-09-24	3.4	3.77	3.44	3.7	0.004	0.68	0.0	0.05	17.16	0.00	1.940	11.26	0.00	5.0	95.0	0.0	0.65	0.55	0.77	2.03	3.7	0.005	0.75	0.0	0.04	16.08	0.00	2.209	10.00	3.12	5.6	94.4	0.0	0.75	0.55	0.57	0.82	1.60	11912	1445	10	0	19	0	0	logfile
✔	8GZ3	34389	2024-11-15	2022-09-24	3.3	3.13	—	3.1	0.012	1.45	3.0	0.10	15.00	0.01	2.142	5.81	1.74	1.8	98.2	0.0	-0.20	0.63	0.77	2.77	3.1	0.003	0.59	0.0	0.03	14.03	0.00	2.455	4.44	1.74	1.2	98.8	0.0	0.78	1.18	0.71	0.83	3.21	8542	789	7	0	434	1	0	logfile
✔	8GYX	34379	2024-11-14	2022-09-24	3.7	3.91	3.72	3.9	0.007	1.36	0.0	0.07	16.07	0.01	2.208	6.07	0.30	0.8	99.2	0.0	1.06	0.50	0.76	2.38	3.9	0.003	0.67	0.0	0.04	16.64	0.00	1.601	9.71	3.78	2.0	98.0	0.0	2.64	0.62	0.51	0.77	1.71	6118	760	4	0	6	0	0	logfile
✔	8EL9	28225	2024-11-18	2022-09-23	2.27	2.39	2.29	2.4	0.003	0.65	0.0	0.05	17.09	0.01	2.197	3.40	1.23	2.5	97.5	0.0	0.05	0.75	0.85	4.95	2.4	0.005	0.77	0.0	0.05	17.22	0.01	2.413	5.18	1.28	2.7	97.3	0.0	0.04	0.23	0.75	0.86	5.18	17429	1990	12	0	8	1015	0	logfile
✔	8GYQ	34376	2024-11-19	2022-09-23	3.4	3.91	3.44	3.9	0.003	0.58	0.0	0.04	17.63	0.00	1.840	7.37	0.66	7.3	92.6	0.2	0.23	0.62	0.75	1.43	3.9	0.003	0.64	0.0	0.04	18.07	0.00	2.454	7.47	4.37	4.6	95.4	0.0	1.05	0.41	0.62	0.78	1.31	19712	2422	14	0	7	0	0	logfile
✔	8EL7	28223	2024-11-14	2022-09-23	2.8	3.11	2.95	3.1	0.006	0.61	0.0	0.04	13.13	0.00	2.295	2.43	0.00	1.7	98.3	0.0	0.97	0.57	0.80	2.31	3.1	0.002	0.49	0.0	0.04	14.81	0.00	2.548	1.55	1.95	1.9	98.1	0.0	1.63	0.24	0.57	0.80	2.38	4562	604	3	0	0	5	0	logfile
✔	8EL8	28224	2024-11-14	2022-09-23	3.2	3.53	3.33	3.5	0.007	0.70	0.0	0.04	13.20	0.00	2.403	2.38	0.00	1.7	98.3	0.0	0.75	0.66	0.85	2.31	3.5	0.002	0.43	0.0	0.04	15.26	0.00	2.627	1.59	0.68	1.6	98.4	0.0	1.81	0.28	0.66	0.84	1.38	4467	597	2	0	0	0	0	logfile
✔	8GYP	34375	2024-11-19	2022-09-23	3.5	3.83	3.39	3.8	0.003	0.59	0.0	0.03	17.32	0.00	2.040	10.71	0.09	7.2	92.4	0.3	0.70	0.67	0.76	1.79	3.8	0.003	0.73	0.0	0.04	17.32	0.00	2.538	5.90	4.92	5.6	94.1	0.3	1.66	1.25	0.67	0.76	1.55	19538	2450	14	0	7	0	0	logfile
✔	8GYT	34377	2024-11-19	2022-09-23	3.68	3.73	3.42	3.7	0.003	0.60	0.0	0.03	16.93	0.00	1.982	7.70	0.09	6.1	93.6	0.3	1.96	0.68	0.77	1.54	3.7	0.003	0.76	0.0	0.04	16.94	0.00	2.582	8.05	3.95	5.1	94.6	0.3	1.69	0.99	0.68	0.78	1.63	19503	2450	14	0	7	0	0	logfile
✔	8GYK	34372	2024-11-19	2022-09-22	3.14	3.32	3.21	3.5	0.003	0.73	0.0	0.04	15.84	0.00	2.003	13.16	0.05	6.4	92.9	0.7	-2.07	0.50	0.70	1.66	3.5	0.004	0.73	0.0	0.04	17.70	0.00	1.882	10.57	3.56	7.1	92.4	0.6	-1.48	0.76	0.51	0.77	1.31	18103	2325	16	0	16	0	0	logfile
✔	8GY2	34368	2024-11-16	2022-09-21	2.5	3.19	2.59	3.0	0.007	0.67	0.0	0.04	17.18	0.00	1.759	7.33	2.88	6.8	93.2	0.0	-0.26	0.80	0.89	4.02	3.0	0.003	0.63	0.0	0.04	16.99	0.00	2.212	4.80	1.89	5.8	94.2	0.0	-0.02	0.25	0.80	0.89	4.12	9943	1264	5	0	7	0	0	logfile
✔	8GY7	34371	2024-11-14	2022-09-21	3.3	2.37	3.34	2.2	0.004	0.76	2.0	0.05	15.85	0.01	2.006	10.67	0.96	4.7	95.3	0.0	0.27	0.76	0.77	2.61	2.0	0.004	0.67	0.0	0.04	16.74	0.00	2.269	10.60	4.32	4.4	95.6	0.0	0.68	0.43	0.76	0.78	2.55	7661	968	7	0	1	0	0	logfile

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