Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8E93	27954	2024-11-18	2022-08-26	3.71	4.07	3.71	4.0	0.005	0.83	4.0	0.05	16.77	0.01	2.066	8.37	0.65	8.7	91.3	0.0	-2.88	0.64	0.81	2.05	4.0	0.004	0.73	0.0	0.05	15.63	0.00	2.243	6.53	5.10	9.3	90.7	0.0	-1.57	1.27	0.65	0.82	2.10	16664	2320	11	0	18	0	0	logfile
✔	8E92	27953	2024-11-19	2022-08-26	3.96	4.42	3.97	4.3	0.012	1.20	6.0	0.05	20.03	0.01	2.130	12.83	1.03	9.8	90.1	0.1	-2.71	0.72	0.77	1.40	4.3	0.003	0.76	0.0	0.05	15.52	0.00	2.512	7.55	4.56	8.6	91.4	0.0	-1.65	0.94	0.73	0.78	1.09	18011	2580	17	0	31	0	0	logfile
✔	8E98	27959	2024-11-18	2022-08-26	3.75	4.03	3.75	3.8	0.011	1.09	1.0	0.05	18.58	0.01	2.155	6.38	0.15	7.9	92.1	0.0	-1.29	0.79	0.76	1.70	3.8	0.003	0.71	0.0	0.05	14.65	0.00	2.302	5.50	3.59	6.6	93.3	0.0	-0.67	0.46	0.80	0.77	1.57	17208	2583	11	0	18	0	0	logfile
✔	8E97	27958	2024-11-19	2022-08-26	4.19	3.55	4.21	3.4	0.007	1.06	6.0	0.07	14.17	0.01	1.822	12.52	1.35	13.4	85.9	0.7	-5.58	0.60	0.57	—	3.3	0.005	0.81	0.0	0.05	12.10	0.00	2.422	7.93	0.00	9.7	90.2	0.1	-1.75	0.69	0.71	0.79	—	20374	3074	10	0	15	0	0	logfile
✔	8AVB	15677	2024-11-18	2022-08-26	4.43	5.51	4.88	4.3	0.005	0.81	1.0	0.05	11.64	0.01	2.142	17.52	0.00	4.4	95.4	0.2	-0.47	0.81	0.63	—	4.2	0.003	0.67	0.0	0.05	12.56	0.01	2.338	20.46	0.00	6.2	93.7	0.1	-1.09	1.63	0.81	0.67	—	10591	1326	3	0	0	0	0	logfile
✔	8AVD	15679	2024-11-20	2022-08-26	4.42	4.88	4.54	4.5	0.005	1.09	3.0	0.06	13.22	0.01	1.776	15.37	0.00	5.3	94.4	0.4	-0.68	0.80	0.73	—	4.5	0.003	0.67	0.0	0.05	13.28	0.00	2.160	8.86	0.00	3.0	97.0	0.0	1.31	0.61	0.81	0.76	—	12777	1617	9	0	3	0	0	logfile
✔	8GPJ	34194	2024-11-19	2022-08-26	3.5	2.53	3.39	2.3	0.006	0.85	0.0	0.05	16.94	0.00	2.176	10.26	0.00	4.7	95.3	0.0	-0.48	0.77	0.77	3.23	2.3	0.004	0.68	0.0	0.05	15.10	0.00	2.385	8.78	2.98	4.7	95.3	0.0	-0.43	1.12	0.76	0.77	2.66	20259	2382	48	0	126	0	0	logfile
✔	8GPN	34195	2024-11-17	2022-08-26	3.2	3.80	3.24	3.4	0.007	0.62	0.0	0.04	26.21	0.00	2.193	8.82	0.11	2.6	97.4	0.0	1.29	0.84	0.80	3.26	3.4	0.004	0.62	0.0	0.03	26.52	0.00	2.450	8.96	1.57	2.2	97.7	0.1	2.54	1.56	0.86	0.85	1.81	15047	1211	11	292	0	0	0	logfile
✔	8AVG	15682	2024-11-17	2022-08-26	4.01	3.61	3.84	3.5	0.003	0.70	0.0	0.05	15.12	0.00	2.189	13.04	0.07	9.3	90.5	0.2	-2.48	0.79	0.73	—	3.5	0.004	0.65	0.0	0.05	14.79	0.00	2.464	9.84	0.07	9.5	90.4	0.1	-2.21	0.35	0.79	0.73	—	13746	1732	4	0	2	0	0	logfile
✔	8AUR	15673	2024-11-14	2022-08-25	3.47	3.44	3.63	3.6	0.002	0.54	0.0	0.04	13.41	0.00	2.350	6.62	0.00	5.6	94.4	0.0	-1.30	0.72	0.82	2.41	3.5	0.005	0.66	0.0	0.04	16.05	0.00	2.611	8.30	2.54	8.4	91.5	0.1	-1.29	1.64	0.71	0.84	2.62	5409	699	3	0	0	0	0	logfile
✔	8GP5	34190	2024-11-14	2022-08-25	4.05	4.31	3.42	4.2	0.005	0.80	0.0	0.06	16.71	0.00	2.199	12.31	0.18	5.4	94.6	0.0	-1.09	0.61	0.79	—	4.2	0.004	0.72	0.0	0.05	13.91	0.00	2.375	10.83	0.00	6.1	93.9	0.0	-1.10	0.40	0.60	0.79	—	5470	646	11	0	26	0	0	logfile
✔	8Goo	34178	2024-11-18	2022-08-25	4.4	4.74	4.39	4.4	0.004	0.66	0.0	0.04	12.86	0.00	2.221	10.84	0.49	5.0	94.9	0.1	0.57	0.85	0.79	—	4.4	0.006	0.80	0.0	0.05	12.97	0.01	2.426	17.65	0.00	8.9	91.1	0.0	-1.38	1.91	0.86	0.82	—	16966	2223	12	0	0	0	0	logfile
✔	8GP3	34188	2024-11-16	2022-08-25	4.8	5.31	4.80	4.9	0.004	0.65	0.0	0.04	13.23	0.00	2.102	10.90	0.00	3.4	96.6	0.0	0.13	0.87	0.81	—	4.9	0.004	0.71	0.0	0.04	13.17	0.00	2.473	13.57	0.00	4.5	95.4	0.1	-0.31	1.03	0.87	0.82	—	11494	1522	8	0	0	0	0	logfile
✔	8E8o	27945	2024-11-18	2022-08-25	2.77	3.96	2.79	3.4	0.007	0.75	0.0	0.05	14.96	0.00	2.148	9.75	0.00	5.6	94.4	0.0	-2.82	0.86	0.79	3.49	3.4	0.003	0.70	0.0	0.04	15.29	0.00	2.534	8.39	0.43	5.2	94.8	0.0	0.18	1.16	0.91	0.87	2.41	17704	2224	8	0	4	0	0	logfile
✔	8GoE	34176	2024-11-14	2022-08-24	3.0	3.01	3.02	3.1	0.008	0.85	1.0	0.05	13.13	0.01	2.273	6.40	0.57	2.0	98.0	0.0	-6.19	0.46	0.82	4.16	3.1	0.003	0.64	1.0	0.04	13.78	0.00	2.600	6.25	0.85	2.5	97.5	0.0	1.55	0.41	0.47	0.84	2.98	3323	407	2	0	1	0	0	logfile
✔	8ATW	15665	2024-11-16	2022-08-24	3.62	3.49	3.71	3.7	0.005	0.74	0.0	0.05	18.13	0.00	2.199	8.51	0.00	2.8	97.2	0.0	1.06	0.72	0.79	1.90	3.6	0.006	0.67	0.0	0.04	19.77	0.00	1.506	9.33	2.89	3.9	96.1	0.0	0.46	0.39	0.72	0.81	2.00	11283	1258	6	61	1	0	0	logfile
✔	8E7M	27939	2024-11-15	2022-08-24	3.3	3.56	3.36	3.6	0.004	0.76	0.0	0.05	13.53	0.01	2.154	7.51	0.00	4.5	95.5	0.0	-1.04	0.68	0.78	2.45	3.6	0.004	0.65	0.0	0.04	15.04	0.00	2.553	4.61	1.34	3.0	97.0	0.0	1.26	0.43	0.67	0.82	1.87	8293	1030	7	0	11	0	0	logfile
✔	8ATT	15662	2024-11-16	2022-08-24	3.44	3.38	3.45	3.5	0.005	0.81	0.0	0.07	17.71	0.00	2.127	10.09	0.18	2.4	97.6	0.0	0.87	0.70	0.72	1.72	3.5	0.005	0.65	0.0	0.04	19.35	0.00	2.473	10.09	3.40	4.2	95.8	0.0	0.81	0.39	0.72	0.77	1.38	11124	1246	6	56	1	0	0	logfile
✔	8GNK	34167	2024-11-14	2022-08-24	3.1	3.32	3.07	3.3	0.004	0.67	1.0	0.05	15.25	0.00	2.252	5.98	0.47	3.0	97.0	0.0	0.36	0.64	0.89	2.66	3.3	0.002	0.50	0.0	0.04	14.76	0.00	2.615	5.25	3.00	2.3	97.7	0.0	1.44	0.88	0.61	0.87	2.30	6164	751	4	0	12	6	0	logfile
✔	8Go8	34173	2024-11-16	2022-08-24	3.41	3.65	3.44	3.6	0.004	0.61	0.0	0.04	12.95	0.00	2.253	5.19	0.00	2.7	97.3	0.0	1.03	0.74	0.81	2.28	3.6	0.003	0.56	0.0	0.04	14.89	0.00	2.594	6.08	0.98	3.5	96.5	0.0	1.00	0.60	0.76	0.84	2.29	11505	1520	8	0	0	0	0	logfile

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