Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YVJ	34129	2024-11-14	2022-08-19	3.6	3.88	3.53	3.8	0.008	1.05	0.0	0.07	13.62	0.01	1.805	24.91	1.73	8.3	90.5	1.2	-4.50	0.63	0.81	1.73	3.8	0.003	0.80	0.0	0.04	14.98	0.00	2.472	10.88	5.76	5.0	94.8	0.2	-1.48	0.71	0.64	0.82	1.05	3267	428	3	0	0	0	0	logfile
✔	7YV8	34120	2024-11-15	2022-08-18	2.94	2.33	2.97	2.1	0.005	0.65	0.0	0.04	15.36	0.00	2.006	3.85	0.15	6.1	93.9	0.0	-0.89	0.78	0.82	4.02	2.1	0.003	0.65	0.0	0.04	16.02	0.00	2.032	4.87	1.16	5.7	94.3	0.0	0.45	0.95	0.80	0.84	3.03	6513	793	4	0	7	0	0	logfile
✔	8AS6	15607	2024-11-17	2022-08-18	3.4	2.91	3.40	3.2	0.004	0.70	0.0	0.04	15.52	0.01	2.232	4.32	0.00	8.1	91.9	0.0	-1.67	0.68	0.83	2.08	3.1	0.004	0.63	0.0	0.04	16.65	0.00	2.495	6.21	0.80	8.2	91.8	0.0	-0.95	0.34	0.69	0.86	1.97	12784	1566	2	14	0	0	0	logfile
✔	7YUY	34115	2024-11-17	2022-08-18	3.5	3.66	3.45	3.6	0.006	0.87	0.0	0.05	15.06	0.01	2.081	7.73	0.32	9.7	90.1	0.2	-2.51	0.69	0.85	3.04	3.6	0.003	0.63	0.0	0.04	15.91	0.00	2.556	3.95	1.81	8.0	91.8	0.2	-0.44	1.01	0.69	0.85	2.01	12391	1503	4	0	31	0	0	logfile
✔	8E4C	27888	2024-11-14	2022-08-18	4.0	3.22	3.15	3.1	0.005	0.84	2.0	0.07	16.28	0.01	2.251	7.49	1.84	6.1	93.9	0.0	-0.24	0.48	0.49	—	3.1	0.004	0.81	0.0	0.05	17.26	0.01	2.148	13.71	6.21	5.5	94.5	0.0	-0.53	1.25	0.48	0.48	—	6398	805	6	0	5	0	0	logfile
✔	8AS8	15609	2024-11-18	2022-08-18	3.0	3.30	2.99	3.2	0.004	0.62	0.0	0.04	19.61	0.00	1.950	32.44	4.10	6.0	93.7	0.2	0.90	0.59	0.84	1.81	3.2	0.005	0.78	0.0	0.04	19.47	0.00	2.426	10.35	4.72	5.8	94.1	0.1	0.96	0.41	0.58	0.84	1.69	16700	2082	7	0	2	0	0	logfile
✔	8E3X	27872	2024-11-15	2022-08-17	2.3	3.02	2.29	2.8	0.003	0.58	0.0	0.04	13.02	0.00	2.239	5.84	0.00	2.1	97.9	0.0	1.49	0.70	0.82	3.16	2.8	0.004	0.58	0.0	0.04	15.30	0.00	2.444	4.53	0.32	2.3	97.7	0.0	1.50	0.96	0.75	0.89	3.64	8979	1140	8	0	0	11	0	logfile
✔	8E3Z	27874	2024-11-15	2022-08-17	2.7	3.04	2.73	3.0	0.003	0.59	0.0	0.04	12.80	0.00	2.219	7.18	0.11	2.2	97.8	0.0	0.87	0.68	0.77	2.49	2.9	0.003	0.57	0.0	0.04	16.40	0.00	2.462	5.70	1.92	2.6	97.4	0.0	1.14	0.58	0.73	0.84	2.87	8898	1132	8	0	0	5	0	logfile
✔	8E40	27875	2024-11-15	2022-08-17	3.57	4.33	3.57	3.7	0.005	0.93	0.0	0.05	19.34	0.01	2.225	18.73	2.12	5.9	93.9	0.2	-2.84	0.75	0.62	1.01	3.8	0.003	0.68	0.0	0.04	19.30	0.00	2.000	14.03	3.54	4.3	95.7	0.0	-0.65	1.79	0.87	0.76	0.97	6297	636	6	47	2	0	0	logfile
✔	7YUH	34107	2024-11-17	2022-08-17	3.7	3.99	3.78	3.8	0.010	1.18	0.0	0.07	10.78	0.01	2.253	6.61	0.15	10.9	88.9	0.1	-4.68	0.80	0.77	1.57	3.8	0.003	0.73	0.0	0.04	15.11	0.01	2.498	10.12	2.11	6.7	93.3	0.0	-1.11	1.26	0.80	0.77	0.85	12432	1596	3	0	0	0	0	logfile
✔	8E3Y	27873	2024-11-15	2022-08-17	2.3	2.68	2.31	2.6	0.003	0.60	0.0	0.05	12.65	0.00	2.237	5.72	0.11	2.0	98.0	0.0	1.26	0.72	0.85	4.19	2.6	0.003	0.58	0.0	0.04	15.75	0.00	2.478	5.55	0.95	1.7	98.3	0.0	1.74	0.79	0.74	0.88	4.28	8966	1139	8	0	0	14	0	logfile
✔	8E3Q	27870	2024-11-17	2022-08-17	2.68	2.93	2.73	2.9	0.003	0.57	0.0	0.04	13.14	0.00	2.219	8.89	0.14	4.7	95.0	0.3	-0.58	0.74	0.84	4.68	2.9	0.002	0.58	0.0	0.04	16.23	0.00	2.583	7.39	1.36	4.7	95.2	0.1	-0.58	0.36	0.74	0.86	4.22	12739	1603	4	0	1	0	0	logfile
✔	7YUM	34108	2024-11-18	2022-08-17	3.8	4.12	3.93	3.9	0.010	1.26	0.0	0.07	11.17	0.01	2.209	8.96	0.34	12.3	87.6	0.1	-4.61	0.81	0.73	1.03	3.9	0.003	0.78	0.0	0.04	14.97	0.00	2.464	12.13	2.20	7.3	92.7	0.0	-1.06	1.47	0.81	0.71	0.46	16576	2128	4	0	0	0	0	logfile
✔	7YUV	34112	2024-11-18	2022-08-17	3.8	4.01	3.85	3.9	0.003	0.67	0.0	0.04	13.83	0.00	2.141	15.66	0.06	6.3	93.7	0.0	-1.33	0.74	0.66	0.61	3.9	0.003	0.74	0.0	0.05	15.93	0.00	2.428	15.27	2.48	6.7	93.3	0.0	-1.26	0.47	0.76	0.70	0.55	16657	2128	7	0	3	0	0	logfile
✔	7YUF	34105	2024-11-15	2022-08-17	3.29	3.54	3.31	3.7	0.006	0.80	0.0	0.05	12.37	0.01	2.232	1.74	0.00	3.8	96.2	0.0	-0.26	0.57	0.73	2.51	3.6	0.003	0.61	0.0	0.04	14.84	0.00	2.439	4.79	2.64	3.6	96.4	0.0	1.18	0.61	0.61	0.78	1.08	8415	1105	5	0	0	0	0	logfile
✔	8E3S	27871	2024-11-14	2022-08-17	3.1	4.11	3.27	3.9	0.003	0.59	0.0	0.04	13.23	0.00	2.185	10.30	0.00	3.6	96.4	0.0	0.13	0.79	0.75	2.95	3.9	0.003	0.61	0.0	0.04	15.10	0.00	2.599	6.82	1.35	3.0	97.0	0.0	0.02	1.00	0.78	0.75	2.49	4072	503	2	0	1	0	0	logfile
✔	8E3i	27866	2024-11-17	2022-08-17	2.53	2.76	2.58	2.8	0.004	0.62	0.0	0.04	13.35	0.00	2.215	8.98	0.07	5.3	94.6	0.1	-0.36	0.73	0.88	4.95	2.8	0.003	0.61	0.0	0.04	15.85	0.00	2.445	6.70	1.10	5.0	94.9	0.1	-0.54	0.36	0.74	0.89	4.70	13431	1671	5	7	3	0	0	logfile
✔	7YTW	34094	2024-11-14	2022-08-16	3.2	3.60	3.23	3.6	0.009	1.11	0.0	0.07	13.30	0.01	2.029	8.32	0.00	5.0	95.0	0.0	-3.06	0.57	0.80	2.90	3.6	0.004	0.69	0.0	0.05	14.81	0.01	2.300	11.83	1.66	4.3	95.7	0.0	0.33	0.28	0.59	0.82	1.21	7744	1014	6	0	6	2	0	logfile
✔	7YTY	34095	2024-11-14	2022-08-16	3.5	3.88	3.47	3.9	0.009	1.18	0.0	0.06	13.29	0.01	2.027	7.48	0.00	4.0	96.0	0.0	-1.66	0.56	0.77	2.02	3.9	0.004	0.66	0.0	0.04	15.59	0.00	2.549	11.58	3.86	4.9	95.1	0.0	0.70	0.49	0.61	0.80	1.36	7608	1002	2	0	0	0	0	logfile
✔	8E2U	27846	2024-11-17	2022-08-16	3.48	3.78	3.51	3.9	0.006	0.97	0.0	0.05	14.01	0.01	2.162	4.01	0.94	8.2	91.4	0.3	-2.08	0.71	0.78	2.50	3.9	0.003	0.60	0.0	0.04	15.01	0.00	2.397	3.02	1.21	7.9	92.0	0.1	-1.73	0.46	0.70	0.79	2.40	13228	880	3	0	0	0	6581	logfile

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