Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YQC	34023	2024-11-16	2022-08-06	2.82	2.99	2.80	3.0	0.013	1.86	24.0	0.13	16.60	0.01	2.497	5.68	9.34	1.3	98.7	0.0	3.07	0.65	0.81	2.22	3.0	0.003	0.75	0.0	0.04	17.37	0.00	2.458	4.65	3.47	1.0	99.0	0.0	3.54	0.45	0.65	0.82	2.15	11396	1386	7	0	0	0	0	logfile
✔	8DZ3	27787	2024-11-17	2022-08-06	2.7	2.85	2.67	2.9	0.003	0.59	0.0	0.04	15.53	0.00	1.994	7.02	3.48	3.5	96.5	0.0	0.07	0.65	0.83	3.90	2.9	0.007	0.73	0.0	0.05	16.42	0.01	2.477	6.22	3.63	5.8	94.2	0.0	-0.39	0.33	0.64	0.83	4.30	12726	1659	15	0	0	0	0	logfile
✔	8DZ4	27788	2024-11-19	2022-08-06	3.2	3.45	3.17	3.4	0.002	0.55	0.0	0.04	14.79	0.00	2.190	6.88	0.09	2.9	97.1	0.0	0.22	0.72	0.85	3.75	3.4	0.004	0.61	0.0	0.04	15.76	0.00	2.470	6.98	2.58	3.0	97.0	0.0	-0.08	1.67	0.71	0.85	3.75	20290	2618	23	0	0	0	0	logfile
✔	7YQD	34024	2024-11-16	2022-08-06	3.4	3.67	3.38	3.7	0.012	1.46	7.0	0.10	13.55	0.00	2.335	4.80	7.63	0.5	99.5	0.0	6.20	0.79	0.85	0.96	3.7	0.003	0.60	0.0	0.04	16.64	0.00	2.390	6.45	3.02	0.7	99.3	0.0	4.46	0.66	0.77	0.84	1.18	10290	1330	7	0	0	0	0	logfile
✔	8DYX	27785	2024-11-19	2022-08-05	3.0	3.18	3.02	3.1	0.003	0.57	0.0	0.04	13.78	0.00	2.157	4.74	0.24	2.6	97.4	0.0	-0.08	0.79	0.86	4.00	3.1	0.004	0.75	1.0	0.05	14.95	0.00	2.378	6.04	2.03	3.8	96.2	0.0	-0.31	0.39	0.79	0.87	3.89	20030	2653	23	0	0	0	0	logfile
✔	8DYT	27781	2024-11-17	2022-08-05	3.3	3.55	3.28	3.5	0.007	0.67	0.0	0.05	15.30	0.01	2.181	8.30	0.45	5.1	94.9	0.0	-0.40	0.80	0.89	4.29	3.5	0.003	0.55	0.0	0.04	15.89	0.00	2.535	6.41	3.32	4.2	95.8	0.0	0.15	1.19	0.82	0.89	4.30	14578	1920	18	0	0	0	0	logfile
✔	8DYW	27784	2024-11-19	2022-08-05	3.72	4.06	3.65	3.9	0.006	0.85	0.0	0.04	15.01	0.01	2.122	14.00	0.30	3.7	95.9	0.4	0.02	0.72	0.83	2.30	3.9	0.005	0.71	0.0	0.05	15.91	0.00	2.422	13.61	3.05	4.6	95.0	0.4	-0.05	0.50	0.72	0.84	2.42	18494	2370	21	0	0	0	0	logfile
✔	8DYU	27782	2024-11-18	2022-08-05	4.0	4.36	4.20	4.3	0.005	0.87	2.0	0.05	14.19	0.01	2.167	4.21	0.23	3.1	96.8	0.0	-0.21	0.72	0.68	—	4.3	0.003	0.61	0.0	0.04	15.90	0.00	2.106	8.17	1.41	2.8	97.2	0.0	0.90	0.87	0.73	0.72	—	48178	3174	4	0	4	0	23568	logfile
✔	8DYV	27783	2024-11-18	2022-08-05	3.97	4.29	4.08	4.2	0.005	0.89	2.0	0.05	15.82	0.01	2.130	5.76	0.20	3.6	96.3	0.0	-0.06	0.72	0.70	0.70	4.2	0.003	0.59	0.0	0.04	16.42	0.00	2.312	9.44	1.73	4.1	95.9	0.0	0.24	0.52	0.72	0.69	0.38	45926	2854	3	0	4	0	22874	logfile
✔	7YQ8	34022	2024-11-17	2022-08-05	3.9	4.11	3.68	3.3	0.004	0.65	0.0	0.04	17.08	0.00	2.038	13.21	0.00	3.7	96.3	0.0	0.76	0.86	0.80	1.12	3.3	0.003	0.59	0.0	0.04	18.37	0.00	2.005	9.03	1.48	3.4	96.6	0.0	0.82	1.30	0.85	0.79	0.50	13036	1460	10	56	4	0	0	logfile
✔	8AN1	15529	2024-11-18	2022-08-04	3.93	4.18	3.94	4.0	0.002	0.47	0.0	0.04	11.04	0.00	2.168	6.31	3.10	3.4	96.5	0.1	1.42	0.83	0.81	1.35	4.0	0.003	0.64	0.0	0.04	14.08	0.00	2.129	6.24	3.82	4.6	95.3	0.1	0.97	1.16	0.83	0.81	1.27	47790	6255	18	0	0	0	0	logfile
✔	8AMX	15528	2024-11-18	2022-08-04	2.55	2.79	2.59	2.7	0.004	0.63	0.0	0.04	11.93	0.01	2.414	2.40	0.00	2.4	97.2	0.3	2.10	0.64	0.86	3.96	2.7	0.003	0.56	0.0	0.04	15.17	0.00	2.625	3.26	0.50	3.2	96.4	0.3	2.78	0.24	0.69	0.89	2.98	15633	2024	16	0	0	57	0	logfile
✔	8AMW	15527	2024-11-18	2022-08-04	3.0	3.27	3.03	3.2	0.005	0.61	0.0	0.04	11.06	0.01	2.245	3.30	0.44	3.9	96.1	0.0	1.57	0.63	0.87	3.65	3.2	0.002	0.53	0.0	0.04	13.66	0.00	2.468	4.34	1.25	3.4	96.6	0.0	2.43	0.27	0.66	0.88	2.51	15792	2032	21	0	16	5	0	logfile
✔	7YPo	34010	2024-11-16	2022-08-04	3.5	3.79	3.56	3.8	0.004	0.59	0.0	0.04	16.33	0.00	2.091	11.72	0.00	4.7	95.3	0.0	-1.80	0.56	0.78	2.30	3.8	0.003	0.59	0.0	0.04	18.67	0.00	2.483	8.88	2.02	3.3	96.7	0.0	-1.01	0.57	0.55	0.77	2.35	11324	1308	5	28	0	0	0	logfile
✔	7YPX	34017	2024-11-15	2022-08-04	3.12	4.18	3.16	3.7	0.004	0.57	0.0	0.04	10.61	0.00	2.092	12.71	0.00	3.7	96.3	0.0	-0.23	0.91	0.85	2.88	3.7	0.003	0.68	0.0	0.04	12.65	0.00	2.458	10.40	1.04	2.9	97.1	0.0	-0.35	1.13	0.92	0.86	2.27	8808	1236	6	0	0	0	0	logfile
✔	7YPQ	34011	2024-11-14	2022-08-04	3.1	3.22	2.15	3.2	0.005	0.63	0.0	0.05	17.79	0.00	2.261	7.93	0.00	2.2	97.8	0.0	-0.66	0.52	0.79	2.67	3.2	0.005	0.59	0.0	0.04	19.36	0.00	2.537	7.57	1.61	2.2	97.8	0.0	0.11	0.31	0.52	0.80	2.26	2915	327	2	11	0	0	0	logfile
✔	8DY6	27776	2024-11-20	2022-08-03	4.32	4.84	4.16	4.2	0.006	0.97	0.0	0.06	19.23	0.01	2.266	4.49	0.00	4.4	95.4	0.2	-1.13	0.82	0.86	—	4.2	0.005	0.66	0.0	0.04	12.97	0.00	2.384	9.19	0.00	4.8	95.2	0.0	-0.16	0.33	0.83	0.87	—	20778	2445	54	0	132	0	0	logfile
✔	7YPG	33999	2024-11-14	2022-08-03	2.5	2.00	2.09	3.0	0.008	0.80	0.0	0.06	14.50	0.00	2.331	9.02	0.00	12.3	87.7	0.0	-5.97	0.40	0.82	3.85	3.0	0.004	0.66	0.0	0.05	17.43	0.00	2.641	8.29	5.77	8.2	91.8	0.0	-5.34	0.98	0.41	0.82	3.15	2676	354	6	0	0	0	0	logfile
✔	8AMF	15525	2024-11-16	2022-08-03	3.8	4.56	—	4.4	0.007	0.99	0.0	0.07	18.67	0.01	2.281	6.91	0.77	7.6	92.4	0.0	-3.87	0.55	0.84	1.57	4.4	0.004	0.74	0.0	0.05	19.53	0.00	2.339	9.38	2.50	5.8	94.2	0.0	-0.92	1.36	0.55	0.83	1.44	10507	1332	10	20	4	0	0	logfile
✔	8DYA	27779	2024-11-15	2022-08-03	3.67	4.01	3.65	4.0	0.010	1.49	3.0	0.10	10.00	0.01	1.995	1.41	0.56	3.9	95.6	0.5	0.63	0.63	0.66	2.75	4.0	0.004	0.66	0.0	0.04	13.30	0.00	2.589	4.43	3.17	4.1	95.7	0.3	1.25	0.73	0.70	0.75	2.66	7896	1164	6	0	18	0	0	logfile

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