Table showing results for November 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y9X	33695	2024-11-19	2022-06-26	2.49	2.67	2.52	2.7	0.004	0.52	0.0	0.04	11.11	0.00	2.130	5.49	0.31	1.6	98.4	0.0	-0.15	0.70	0.82	4.82	2.7	0.002	0.49	0.0	0.04	15.49	0.00	2.512	5.08	1.04	1.2	98.8	0.0	1.15	1.75	0.66	0.82	4.04	18662	2192	4	38	4	0	0	logfile
✔	7Y9Y	33696	2024-11-17	2022-06-26	2.77	3.00	2.82	3.0	0.003	0.60	0.0	0.04	17.98	0.01	2.064	8.75	1.63	1.5	98.5	0.0	0.08	0.70	0.83	3.22	3.0	0.002	0.56	0.0	0.04	18.06	0.00	2.105	5.83	1.93	1.8	98.2	0.0	0.57	0.43	0.64	0.82	3.11	13781	1545	5	61	4	0	0	logfile
✔	7Y9T	33691	2024-11-14	2022-06-26	3.1	3.31	3.07	3.3	0.018	1.56	18.0	0.09	11.12	0.01	2.034	4.09	0.96	6.7	93.3	0.0	-6.23	0.69	0.87	3.51	3.3	0.003	0.65	0.0	0.04	13.66	0.00	2.609	4.47	1.68	4.6	95.4	0.0	-1.13	0.59	0.66	0.87	3.20	7726	992	4	0	0	0	0	logfile
✔	8DH9	27433	2024-11-16	2022-06-25	4.5	3.05	4.86	4.5	0.003	0.65	0.0	0.04	12.03	0.00	2.073	13.96	0.08	2.8	96.9	0.2	0.38	0.65	0.52	—	2.4	0.004	0.76	0.0	0.05	12.70	0.01	2.478	14.30	0.00	4.6	95.3	0.1	-0.30	1.10	0.69	0.60	—	10229	1281	4	0	0	0	0	logfile
✔	8DHA	27434	2024-11-14	2022-06-25	3.8	4.85	4.37	4.8	0.004	0.76	0.0	0.05	17.10	0.01	2.155	15.08	0.49	4.8	95.2	0.0	0.08	0.69	0.73	0.68	4.8	0.003	0.75	0.0	0.05	17.49	0.00	2.563	9.82	3.46	4.6	95.4	0.0	-0.18	0.55	0.69	0.72	1.00	3510	439	5	0	2	0	0	logfile
✔	8DH7	27431	2024-11-15	2022-06-25	2.99	3.24	3.02	3.3	0.003	0.59	0.0	0.05	12.96	0.01	2.117	6.55	0.55	2.8	97.1	0.1	0.73	0.76	0.86	4.31	3.3	0.003	0.56	0.0	0.05	15.73	0.00	2.467	4.97	1.66	2.2	97.7	0.1	0.81	0.39	0.75	0.88	3.34	8274	1052	2	0	0	0	0	logfile
✔	7Y8T	33685	2024-11-18	2022-06-24	2.9	3.12	2.98	3.1	0.004	0.63	1.0	0.04	16.97	0.00	2.218	4.76	1.21	6.0	93.8	0.2	-0.46	0.74	0.85	3.19	3.1	0.003	0.60	0.0	0.04	17.73	0.00	2.448	2.85	2.48	5.7	94.1	0.2	-0.01	0.31	0.74	0.85	2.85	16754	1978	4	37	4	0	0	logfile
✔	7Y8Y	33686	2024-11-18	2022-06-24	3.0	3.24	3.07	3.2	0.003	0.61	0.0	0.04	18.86	0.00	2.201	6.52	2.51	5.7	94.1	0.2	-0.56	0.76	0.81	2.23	3.2	0.002	0.59	0.0	0.04	19.08	0.00	2.471	4.87	2.68	6.0	94.0	0.1	-0.35	0.28	0.76	0.82	2.07	17023	1971	5	55	4	0	0	logfile
✔	8DGA	27420	2024-11-18	2022-06-23	3.73	4.05	3.82	3.9	0.007	1.17	0.0	0.06	14.99	0.01	2.210	8.33	0.12	7.0	92.7	0.3	-2.35	0.70	0.60	0.89	3.9	0.003	0.68	0.0	0.04	16.51	0.00	2.269	13.84	2.24	6.2	93.6	0.3	0.02	0.99	0.70	0.60	0.73	15473	1811	5	41	1	0	0	logfile
✔	8DG5	27416	2024-11-18	2022-06-23	3.26	3.59	3.37	3.5	0.011	1.42	1.0	0.06	16.30	0.01	2.013	8.22	0.00	8.0	91.7	0.3	-2.73	0.69	0.69	1.25	3.5	0.003	0.69	0.0	0.04	17.23	0.00	1.995	10.97	2.03	6.4	93.3	0.2	-0.52	0.39	0.68	0.70	0.52	16269	1887	5	50	12	0	0	logfile
✔	8DG9	27419	2024-11-18	2022-06-23	2.24	2.40	2.33	2.5	0.004	0.63	0.0	0.05	17.36	0.00	2.116	5.15	0.91	2.7	97.3	0.0	-0.16	0.69	0.83	4.59	2.5	0.005	0.86	0.0	0.05	16.73	0.00	2.131	4.34	2.74	2.6	97.4	0.0	0.36	1.10	0.69	0.84	4.64	15450	2007	12	0	6	0	0	logfile
✔	8DGi	27423	2024-11-17	2022-06-23	3.94	4.27	4.04	4.1	0.005	1.16	4.0	0.06	15.93	0.01	2.263	8.89	0.67	5.9	93.8	0.3	-2.32	0.67	0.52	0.27	4.1	0.003	0.75	0.0	0.04	16.49	0.00	2.495	15.02	3.26	5.9	94.0	0.1	-0.41	0.58	0.66	0.50	0.27	13580	1690	2	0	0	0	0	logfile
✔	8A8M	15233	2024-11-14	2022-06-23	4.0	5.84	4.31	4.3	0.004	0.89	0.0	0.05	18.82	0.00	2.218	29.09	1.56	8.5	91.4	0.2	-2.63	0.78	0.54	—	4.5	0.004	0.93	0.0	0.05	18.17	0.00	1.895	29.70	3.47	8.3	91.5	0.2	-2.35	0.97	0.83	0.73	—	5244	647	4	0	6	0	0	logfile
✔	8DG8	27418	2024-11-16	2022-06-23	3.62	3.99	3.58	4.0	0.004	0.72	0.0	0.05	14.02	0.01	2.129	16.01	0.15	8.4	91.6	0.1	-2.83	0.52	0.57	1.57	4.0	0.003	0.74	0.0	0.05	15.95	0.00	2.432	10.35	2.84	7.8	92.0	0.1	-2.22	0.54	0.65	0.67	1.12	11617	1494	8	0	9	0	0	logfile
✔	8DG7	27417	2024-11-18	2022-06-23	3.32	3.61	3.39	3.5	0.007	1.11	1.0	0.06	18.49	0.01	1.980	8.83	1.24	8.7	91.2	0.1	-2.75	0.70	0.70	0.47	3.5	0.003	0.70	0.0	0.04	18.53	0.00	1.926	12.18	3.60	6.6	93.3	0.1	-0.56	0.45	0.71	0.71	0.33	15609	1816	7	47	9	0	0	logfile
✔	7Y89	33682	2024-11-15	2022-06-23	3.02	3.56	3.18	3.4	0.007	0.76	0.0	0.05	14.49	0.00	2.092	11.46	1.29	8.2	91.5	0.4	-1.39	0.69	0.85	2.94	3.4	0.003	0.63	0.0	0.04	16.02	0.00	2.464	5.30	2.47	5.4	94.5	0.1	0.03	0.98	0.65	0.81	1.87	8641	1110	5	0	0	0	0	logfile
✔	7Y7Z	33675	2024-11-14	2022-06-22	3.2	3.57	3.17	3.5	0.006	0.71	0.0	0.05	15.33	0.01	2.037	11.20	0.00	7.2	92.8	0.0	-0.11	0.59	0.80	1.84	3.5	0.003	0.66	0.0	0.05	16.21	0.00	2.602	5.25	1.99	5.5	94.5	0.0	1.23	0.45	0.56	0.79	1.21	4303	532	2	0	5	0	0	logfile
✔	7Y82	33678	2024-11-17	2022-06-22	2.83	2.38	2.88	3.0	0.003	0.57	0.0	0.04	20.35	0.00	1.887	16.18	4.59	1.8	98.2	0.0	0.77	0.77	0.81	2.77	3.0	0.006	0.62	0.0	0.04	20.34	0.00	1.891	12.81	3.06	2.5	97.5	0.0	0.72	0.32	0.71	0.80	3.01	12278	1341	4	66	5	0	0	logfile
✔	7Y7W	33672	2024-11-14	2022-06-22	2.4	2.70	2.46	2.7	0.006	0.78	0.0	0.08	17.20	0.00	1.907	5.88	1.11	3.0	97.0	0.0	0.06	0.68	0.85	4.04	2.7	0.003	0.56	0.0	0.04	16.57	0.00	2.216	3.53	2.90	1.7	98.3	0.0	1.85	1.15	0.70	0.87	3.86	4310	529	2	0	7	48	0	logfile
✔	7Y81	33677	2024-11-16	2022-06-22	2.54	2.77	2.62	2.8	0.006	0.86	0.0	0.06	20.88	0.01	2.034	7.10	2.91	1.2	98.8	0.0	-1.88	0.65	0.80	3.30	2.8	0.004	0.59	0.0	0.04	20.44	0.01	1.901	12.76	2.53	1.4	98.6	0.0	-0.03	1.14	0.65	0.81	3.83	11044	1223	4	55	5	0	0	logfile

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